BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9h08.xg.2.1
(770 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE421346.1|BE421346 HWM008.D03 ITEC HWM Barley Leaf Libr... 40 0.10
gb|AL503599.1|AL503599 AL503599 Hordeum vulgare Barke roots... 40 0.10
gb|BF621115.2|BF621115 HVSMEa0004B20f Hordeum vulgare seedl... 40 0.10
gb|BG299708.1|BG299708 HVSMEa0021H20f Hordeum vulgare seedl... 40 0.10
gb|BF619204.2|BF619204 HVSMEc0015B21f Hordeum vulgare seedl... 40 0.10
gb|BE601776.2|BE601776 HVSMEh0099I05f Hordeum vulgare 5-45 ... 40 0.10
gb|BJ446858.1|BJ446858 BJ446858 K. Sato unpublished cDNA li... 40 0.10
gb|BJ447930.1|BJ447930 BJ447930 K. Sato unpublished cDNA li... 40 0.10
gb|BJ454861.1|BJ454861 BJ454861 K. Sato unpublished cDNA li... 40 0.10
gb|BJ455673.1|BJ455673 BJ455673 K. Sato unpublished cDNA li... 40 0.10
gb|BJ470824.1|BJ470824 BJ470824 K. Sato unpublished cDNA li... 40 0.10
gb|BJ471830.1|BJ471830 BJ471830 K. Sato unpublished cDNA li... 40 0.10
gb|BJ474681.1|BJ474681 BJ474681 K. Sato unpublished cDNA li... 40 0.10
gb|BJ475173.1|BJ475173 BJ475173 K. Sato unpublished cDNA li... 40 0.10
gb|BJ475635.1|BJ475635 BJ475635 K. Sato unpublished cDNA li... 40 0.10
gb|BU974881.1|BU974881 HB29G07r BC Hordeum vulgare subsp. v... 40 0.10
gb|BU979069.1|BU979069 HA15B05r HA Hordeum vulgare subsp. v... 40 0.10
gb|BU979480.1|BU979480 HA16E20r HA Hordeum vulgare subsp. v... 40 0.10
gb|CA001791.1|CA001791 HS05J13r HS Hordeum vulgare subsp. v... 40 0.10
gb|CA023179.1|CA023179 HZ45H13r HZ Hordeum vulgare subsp. v... 40 0.10
gb|BJ547531.1|BJ547531 BJ547531 K. Sato unpublished cDNA li... 40 0.10
gb|BJ547861.1|BJ547861 BJ547861 K. Sato unpublished cDNA li... 40 0.10
gb|CB878375.1|CB878375 HP08F05T HP Hordeum vulgare subsp. v... 40 0.10
gb|CB879662.1|CB879662 HP03D08w HP Hordeum vulgare subsp. v... 40 0.10
gb|CD663301.1|CD663301 UCRHV18_05ac02_b1 Drought-stressed D... 40 0.10
gb|AF490471.1| Hordeum vulgare subsp. vulgare cultivar CI16... 40 0.10
gb|AF490472.1| Hordeum vulgare subsp. vulgare cultivar More... 40 0.10
gb|AF490473.1| Hordeum vulgare subsp. vulgare cultivar Igri... 40 0.10
gb|AL502122.1|AL502122 AL502122 Hordeum vulgare Barke roots... 38 0.41
gb|AL506393.1|AL506393 AL506393 Hordeum vulgare Barke devel... 38 0.41
gb|AL506482.1|AL506482 AL506482 Hordeum vulgare Barke devel... 38 0.41
gb|AL508333.1|AL508333 AL508333 Hordeum vulgare Barke devel... 38 0.41
gb|BF258448.1|BF258448 HVSMEf0015M01f Hordeum vulgare seedl... 38 0.41
gb|BF629333.2|BF629333 HVSMEb0010N19f Hordeum vulgare seedl... 38 0.41
gb|BG309831.1|BG309831 HVSMEc0013A09f Hordeum vulgare seedl... 38 0.41
gb|BF253537.2|BF253537 HVSMEf0001D08f Hordeum vulgare seedl... 38 0.41
gb|BF256447.2|BF256447 HVSMEf0009P21f Hordeum vulgare seedl... 38 0.41
gb|BE194009.2|BE194009 HVSMEh0083F17f Hordeum vulgare 5-45 ... 38 0.41
gb|BF261989.1|BF261989 HV_CEa0002M06f Hordeum vulgare seedl... 38 0.41
gb|BE215430.2|BE215430 HV_CEb0006M11f Hordeum vulgare seedl... 38 0.41
gb|BG369759.2|BG369759 HVSMEi0025O03f Hordeum vulgare 20 DA... 38 0.41
gb|BJ463761.1|BJ463761 BJ463761 K. Sato unpublished cDNA li... 38 0.41
gb|BJ463762.1|BJ463762 BJ463762 K. Sato unpublished cDNA li... 38 0.41
gb|BQ464929.1|BQ464929 HU02C16r HU Hordeum vulgare subsp. v... 38 0.41
gb|BQ471670.1|BQ471670 HV03B24r HV Hordeum vulgare subsp. v... 38 0.41
gb|BM371233.2|BM371233 EBro04_SQ003_O16_R root, 3 week, sal... 38 0.41
gb|BQ767127.1|BQ767127 EBro08_SQ008_E04_R root, 3 week, dro... 38 0.41
gb|BU996261.1|BU996261 HM13A19r HM Hordeum vulgare subsp. v... 38 0.41
gb|CA013337.1|CA013337 HT08B03r HT Hordeum vulgare subsp. v... 38 0.41
gb|CA014526.1|CA014526 HT11J13r HT Hordeum vulgare subsp. v... 38 0.41
gb|CK124684.1|CK124684 BES1824109p11 BES1824 Hordeum vulgar... 38 0.41
>gb|BE421346.1|BE421346 HWM008.D03 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM008.D03, mRNA sequence
Length = 1384
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 157 cgcctcatcttcctcttctc 138
>gb|AL503599.1|AL503599 AL503599 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02L23T 5', mRNA sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 95 ccgccgccggccgccgcctc 76
>gb|BF621115.2|BF621115 HVSMEa0004B20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0004B20f, mRNA sequence
Length = 792
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 86 ccgccgccggccgccgcctc 67
>gb|BG299708.1|BG299708 HVSMEa0021H20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021H20f, mRNA sequence
Length = 799
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 83 ccgccgccggccgccgcctc 64
>gb|BF619204.2|BF619204 HVSMEc0015B21f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015B21f, mRNA sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 67 ccgccgccggccgccgcctc 48
>gb|BE601776.2|BE601776 HVSMEh0099I05f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099I05f, mRNA sequence
Length = 502
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 68 ccgccgccggccgccgcctc 49
>gb|BJ446858.1|BJ446858 BJ446858 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15b17 5', mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 329 cgcctcatcttcctcttctc 310
>gb|BJ447930.1|BJ447930 BJ447930 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17m14 5', mRNA sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 159 cgcctcatcttcctcttctc 140
>gb|BJ454861.1|BJ454861 BJ454861 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15b17 3', mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 314 cgcctcatcttcctcttctc 333
>gb|BJ455673.1|BJ455673 BJ455673 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17m14 3', mRNA sequence
Length = 472
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 330 cgcctcatcttcctcttctc 349
>gb|BJ470824.1|BJ470824 BJ470824 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal26p10 5', mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 314 cgcctcatcttcctcttctc 295
>gb|BJ471830.1|BJ471830 BJ471830 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal21o15 5', mRNA sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 492 cgcctcatcttcctcttctc 473
>gb|BJ474681.1|BJ474681 BJ474681 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal20k15 3', mRNA sequence
Length = 565
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 331 cgcctcatcttcctcttctc 350
>gb|BJ475173.1|BJ475173 BJ475173 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal21o15 3', mRNA sequence
Length = 674
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 356 cgcctcatcttcctcttctc 375
>gb|BJ475635.1|BJ475635 BJ475635 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal26p10 3', mRNA sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 292 cgcctcatcttcctcttctc 311
>gb|BU974881.1|BU974881 HB29G07r BC Hordeum vulgare subsp. vulgare cDNA clone HB29G07
5-PRIME, mRNA sequence
Length = 410
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 99 ccgccgccggccgccgcctc 80
>gb|BU979069.1|BU979069 HA15B05r HA Hordeum vulgare subsp. vulgare cDNA clone HA15B05
5-PRIME, mRNA sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 74 ccgccgccggccgccgcctc 55
>gb|BU979480.1|BU979480 HA16E20r HA Hordeum vulgare subsp. vulgare cDNA clone HA16E20
5-PRIME, mRNA sequence
Length = 506
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 80 ccgccgccggccgccgcctc 61
>gb|CA001791.1|CA001791 HS05J13r HS Hordeum vulgare subsp. vulgare cDNA clone HS05J13
5-PRIME, mRNA sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 33 ccgccgccggccgccgcctc 14
>gb|CA023179.1|CA023179 HZ45H13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45H13
5-PRIME, mRNA sequence
Length = 453
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 264 ggccaagtacccgctcaacc 283
||||||||||||||||||||
Sbjct: 68 ggccaagtacccgctcaacc 87
>gb|BJ547531.1|BJ547531 BJ547531 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal28m19 5', mRNA sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 50 ccgccgccggccgccgcctc 31
>gb|BJ547861.1|BJ547861 BJ547861 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40p14 5', mRNA sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 ccgccgccggccgccgcctc 327
||||||||||||||||||||
Sbjct: 39 ccgccgccggccgccgcctc 20
>gb|CB878375.1|CB878375 HP08F05T HP Hordeum vulgare subsp. vulgare cDNA clone HP08F05
5-PRIME, mRNA sequence
Length = 192
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 131 cgcctcatcttcctcttctc 112
>gb|CB879662.1|CB879662 HP03D08w HP Hordeum vulgare subsp. vulgare cDNA clone HP03D08
3-PRIME, mRNA sequence
Length = 442
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 295 cgcctcatcttcctcttctc 314
>gb|CD663301.1|CD663301 UCRHV18_05ac02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05ac02, mRNA sequence
Length = 492
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 368 cgcctcatcttcctcttctc 387
>gb|AF490471.1| Hordeum vulgare subsp. vulgare cultivar CI16155 CONSTANS-like
protein (CO3) mRNA, complete cds
Length = 1171
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 825 cgcctcatcttcctcttctc 806
>gb|AF490472.1| Hordeum vulgare subsp. vulgare cultivar Morex CONSTANS-like protein
(CO3) mRNA, complete cds
Length = 1148
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 802 cgcctcatcttcctcttctc 783
>gb|AF490473.1| Hordeum vulgare subsp. vulgare cultivar Igri CONSTANS-like protein
(CO3) gene, complete cds
Length = 1283
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 cgcctcatcttcctcttctc 39
||||||||||||||||||||
Sbjct: 1117 cgcctcatcttcctcttctc 1098
>gb|AL502122.1|AL502122 AL502122 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06I23u 3', mRNA sequence
Length = 529
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 460 cgccgccggccgccgcctc 478
>gb|AL506393.1|AL506393 AL506393 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02P15T 5',
mRNA sequence
Length = 700
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 52 cgccgccggccgccgcctc 34
>gb|AL506482.1|AL506482 AL506482 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03E16T 5',
mRNA sequence
Length = 533
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 111 cgccgccggccgccgcctc 93
>gb|AL508333.1|AL508333 AL508333 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08H06V 5',
mRNA sequence
Length = 700
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 56 cgccgccggccgccgcctc 38
>gb|BF258448.1|BF258448 HVSMEf0015M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015M01f, mRNA sequence
Length = 937
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 181 cgccgccggccgccgcctc 163
>gb|BF629333.2|BF629333 HVSMEb0010N19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010N19f, mRNA sequence
Length = 523
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 55 cgccgccggccgccgcctc 37
>gb|BG309831.1|BG309831 HVSMEc0013A09f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0013A09f, mRNA sequence
Length = 792
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 557 atggcgatgatggcaacta 575
|||||||||||||||||||
Sbjct: 402 atggcgatgatggcaacta 420
>gb|BF253537.2|BF253537 HVSMEf0001D08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001D08f, mRNA sequence
Length = 556
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 134 cgccgccggccgccgcctc 116
>gb|BF256447.2|BF256447 HVSMEf0009P21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009P21f, mRNA sequence
Length = 253
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 31 cgccgccggccgccgcctc 13
>gb|BE194009.2|BE194009 HVSMEh0083F17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0083F17f, mRNA sequence
Length = 583
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 306 ctccgccgccggccgccgc 324
|||||||||||||||||||
Sbjct: 12 ctccgccgccggccgccgc 30
>gb|BF261989.1|BF261989 HV_CEa0002M06f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002M06f, mRNA sequence
Length = 859
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 306 ctccgccgccggccgccgc 324
|||||||||||||||||||
Sbjct: 21 ctccgccgccggccgccgc 39
>gb|BE215430.2|BE215430 HV_CEb0006M11f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006M11f, mRNA sequence
Length = 668
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 25 cgccgccggccgccgcctc 7
>gb|BG369759.2|BG369759 HVSMEi0025O03f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025O03f, mRNA sequence
Length = 690
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 85 cgccgccggccgccgcctc 67
>gb|BJ463761.1|BJ463761 BJ463761 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g13 5', mRNA sequence
Length = 596
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 90 gacaacagagacagcaatg 108
|||||||||||||||||||
Sbjct: 47 gacaacagagacagcaatg 29
>gb|BJ463762.1|BJ463762 BJ463762 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g14 5', mRNA sequence
Length = 500
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 90 gacaacagagacagcaatg 108
|||||||||||||||||||
Sbjct: 46 gacaacagagacagcaatg 28
>gb|BQ464929.1|BQ464929 HU02C16r HU Hordeum vulgare subsp. vulgare cDNA clone HU02C16
5-PRIME, mRNA sequence
Length = 665
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 75 cgccgccggccgccgcctc 57
>gb|BQ471670.1|BQ471670 HV03B24r HV Hordeum vulgare subsp. vulgare cDNA clone HV03B24
5-PRIME, mRNA sequence
Length = 403
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 90 gacaacagagacagcaatg 108
|||||||||||||||||||
Sbjct: 323 gacaacagagacagcaatg 305
>gb|BM371233.2|BM371233 EBro04_SQ003_O16_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_O16 5', mRNA sequence
Length = 480
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 75 cgccgccggccgccgcctc 57
>gb|BQ767127.1|BQ767127 EBro08_SQ008_E04_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_E04 5', mRNA sequence
Length = 365
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 48 cgccgccggccgccgcctc 30
>gb|BU996261.1|BU996261 HM13A19r HM Hordeum vulgare subsp. vulgare cDNA clone HM13A19
5-PRIME, mRNA sequence
Length = 631
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 80 cgccgccggccgccgcctc 62
>gb|CA013337.1|CA013337 HT08B03r HT Hordeum vulgare subsp. vulgare cDNA clone HT08B03
5-PRIME, mRNA sequence
Length = 545
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 124 cgccgccggccgccgcctc 106
>gb|CA014526.1|CA014526 HT11J13r HT Hordeum vulgare subsp. vulgare cDNA clone HT11J13
5-PRIME, mRNA sequence
Length = 624
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cgccgccggccgccgcctc 327
|||||||||||||||||||
Sbjct: 129 cgccgccggccgccgcctc 111
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,683
Number of Sequences: 312970
Number of extensions: 98683
Number of successful extensions: 29154
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29101
Number of HSP's gapped (non-prelim): 53
length of query: 770
length of database: 175,134,539
effective HSP length: 19
effective length of query: 751
effective length of database: 169,188,109
effective search space: 127060269859
effective search space used: 127060269859
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)