BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS7b05.xg.2.1
(526 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachi... 337 2e-091
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 256 6e-067
gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachi... 250 4e-065
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 238 2e-061
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 222 9e-057
gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiol... 147 4e-034
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 133 6e-030
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 133 6e-030
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 133 6e-030
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 133 6e-030
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 133 6e-030
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 133 6e-030
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 133 6e-030
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 133 6e-030
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 133 6e-030
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 133 6e-030
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 133 6e-030
gb|BI956576.1|BI956576 HVSMEn0004D17f Hordeum vulgare rachi... 127 4e-028
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 127 4e-028
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 121 2e-026
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 115 1e-024
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 115 1e-024
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 115 1e-024
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 115 1e-024
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 115 1e-024
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 115 1e-024
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 115 1e-024
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 115 1e-024
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 115 1e-024
gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Le... 111 2e-023
gb|BQ661318.1|BQ661318 HM02P11u HM Hordeum vulgare subsp. v... 109 9e-023
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 107 4e-022
gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots... 103 6e-021
gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA li... 98 4e-019
gb|BI956663.1|BI956663 HVSMEn0004K08f Hordeum vulgare rachi... 96 1e-018
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 92 2e-017
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 92 2e-017
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 92 2e-017
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 92 2e-017
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 92 2e-017
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 92 2e-017
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 92 2e-017
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 92 2e-017
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 92 2e-017
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 92 2e-017
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 92 2e-017
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 92 2e-017
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 92 2e-017
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 92 2e-017
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 92 2e-017
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 92 2e-017
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 92 2e-017
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 92 2e-017
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 88 3e-016
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 88 3e-016
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 88 3e-016
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 88 3e-016
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 88 3e-016
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 88 3e-016
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 88 3e-016
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 88 3e-016
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 86 1e-015
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 86 1e-015
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 86 1e-015
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 86 1e-015
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 84 5e-015
gb|BQ464910.1|BQ464910 HU02B19r HU Hordeum vulgare subsp. v... 78 3e-013
gb|BE411894.1|BE411894 ISC010.D05F990917 ITEC ISC Barley Le... 76 1e-012
gb|BI959331.1|BI959331 HVSMEn0019E12f Hordeum vulgare rachi... 76 1e-012
gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. v... 74 5e-012
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 70 8e-011
gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. v... 70 8e-011
gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. v... 68 3e-010
gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA li... 64 5e-009
gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA li... 64 5e-009
gb|BE060456.3|BE060456 HVSMEg0012F17f Hordeum vulgare pre-a... 60 8e-008
gb|AL500926.1|AL500926 AL500926 Hordeum vulgare Barke roots... 56 1e-006
gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA li... 54 5e-006
gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. v... 54 5e-006
gb|BF265178.2|BF265178 HV_CEa0011H21f Hordeum vulgare seedl... 48 3e-004
gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA li... 48 3e-004
gb|BF258638.2|BF258638 HVSMEf0016E13f Hordeum vulgare seedl... 46 0.001
gb|BM368747.1|BM368747 EBem08_SQ004_H23_R embryo, 40 DPA, n... 42 0.018
gb|BQ661800.1|BQ661800 HP01F17w HP Hordeum vulgare subsp. v... 42 0.018
gb|BQ663315.1|BQ663315 HU02B19u HU Hordeum vulgare subsp. v... 40 0.071
gb|BQ665967.1|BQ665967 HZ01L16u HZ Hordeum vulgare subsp. v... 40 0.071
>gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O11f, mRNA sequence
Length = 658
Score = 337 bits (170), Expect = 2e-091
Identities = 254/282 (90%)
Strand = Plus / Plus
Query: 238 tcagcagttgatgccacactgcctgacgtcgggccccttggtcctgacgatgaagggatc 297
||||||||||||||| |||||| | ||||| |||||||||| | ||||| ||||||| ||
Sbjct: 166 tcagcagttgatgccgcactgcttcacgtcaggccccttggccttgacggtgaaggggtc 225
Query: 298 gatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaat 357
|||||||||||| ||||||||||| |||||||| |||||||||||||| |||| ||||||
Sbjct: 226 gatcctgacccaaagcagggagaacatggaggctagcagcacggaccatatgatgacaat 285
Query: 358 ggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgat 417
||||||||||| |||||| | |||||||| |||||||||||||||||||| || |||||
Sbjct: 286 ggtgggcgtcctgttctgcctccccatgaaacccttgaggaacgggtagagatgcacgat 345
Query: 418 gacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgtt 477
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 346 cacccagaaggcgaagaagagcttaccgaatagcggcccccacgactggtacccgttgtt 405
Query: 478 gatggcgtcggagatgccggccacgacgccgatgatgttgat 519
||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 406 gatggcgtcagaaatgcccgccaccacgccgatgatgttgat 447
>gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdl12 3', mRNA sequence
Length = 661
Score = 256 bits (129), Expect = 6e-067
Identities = 207/233 (88%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
|||||||| |||||||||||||| | ||||||||||||||||| ||||| || ||||||
Sbjct: 216 atgaaggggtcgatcctgacccacacaagggagaagatggaggcgagcaggacagaccag 275
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || || |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 276 agcacaacgatggtgggcgtccggttctgcctccccatgagccccttgaggaacgggtag 335
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| |
Sbjct: 336 aggtggacgatgacccagaaggagaagaagagcttcccgaagagcgggccccaggacccg 395
Query: 467 tacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgat 519
||||| ||||||| ||||||||| | |||||| |||| ||||| ||||||||
Sbjct: 396 tacccattgttgacggcgtcggacacgccggcgacgatgccgaccatgttgat 448
>gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015J16f, mRNA sequence
Length = 631
Score = 250 bits (126), Expect = 4e-065
Identities = 206/233 (88%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
|||||||| |||||||||||||| | ||||||||||||||||| ||||| || ||||||
Sbjct: 261 atgaaggggtcgatcctgacccacacaagggagaagatggaggcgagcaggacagaccag 320
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || || |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 321 agcacaacgatggtgggcgtccggttctgcctccccatgagccccttgaggaacgggtag 380
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
||||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||| |
Sbjct: 381 aggtggacgatgacccanaaggagaagaagagcttcccgaagagcgggccccaggacccg 440
Query: 467 tacccgttgttgatggcgtcggagatgccggccacgacgccgatgatgttgat 519
||||| ||||||| ||||||||| | |||||| |||| ||||| ||||||||
Sbjct: 441 tacccattgttgacggcgtcggacacgccggcgacgatgccgaccatgttgat 493
>gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12l12 5', mRNA sequence
Length = 656
Score = 238 bits (120), Expect = 2e-061
Identities = 195/220 (88%)
Strand = Plus / Minus
Query: 300 tcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatgg 359
|||||||||| | ||||||||||||||||| ||||| || ||||||| || || ||||
Sbjct: 656 tcctgacccacacaagggagaagatggaggcgagcaggacagaccagagcacaacgatgg 597
Query: 360 tgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatga 419
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgggcgtccggttctgcctccccatgagccccttgaggaacgggtagaggtggacgatga 537
Query: 420 cccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttga 479
||||||||| |||||||||||| ||||||||||||||||| ||| |||||| |||||||
Sbjct: 536 cccagaaggagaagaagagcttcccgaagagcgggccccaggacccgtacccattgttga 477
Query: 480 tggcgtcggagatgccggccacgacgccgatgatgttgat 519
||||||||| | |||||| |||| ||||| ||||||||
Sbjct: 476 cggcgtcggacacgccggcgacgatgccgaccatgttgat 437
>gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020M07f, mRNA sequence
Length = 533
Score = 222 bits (112), Expect = 9e-057
Identities = 196/224 (87%)
Strand = Plus / Minus
Query: 296 tcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacgaca 355
|||||||||||||| | | |||||||||| |||| ||||| || ||||||| || ||
Sbjct: 532 tcgatcctgacccacacaaaggagaagatgtaggcgagcaggacagaccagagcacaacg 473
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct: 472 atggtgggcgtccggttctgcctccccatgagccccttgaggaacgggtagaggtgaacg 413
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttg 475
||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||| |||
Sbjct: 412 atgacccagaaggagaagaagagcttcccgaagagcgggccccaggacccgtacccattg 353
Query: 476 ttgatggcgtcggagatgccggccacgacgccgatgatgttgat 519
|||| ||||||||| | |||||| |||| ||||| ||||||||
Sbjct: 352 ttgacggcgtcggacacgccggcgacgatgccgaccatgttgat 309
>gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03B21r 3', mRNA sequence
Length = 619
Score = 147 bits (74), Expect = 4e-034
Identities = 161/190 (84%)
Strand = Plus / Plus
Query: 290 aagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatg 349
||||| |||||| |||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct: 253 aaggggtcgatcttgacccagaggagggagaagaccgaggccagcaggacggaccagagt 312
Query: 350 acgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagagg 409
| ||| |||||||| ||||||||||| || |||||||| ||||||||||||||||| |||
Sbjct: 313 atgacgatggtgggagtccggttctgccggcccatgagacccttgaggaacgggtacagg 372
Query: 410 tggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtac 469
|| | || ||||| | || |||||| | ||||||||||||||| ||||| |||| |||
Sbjct: 373 tgcataatcacccacatggagaagaacaccttgccgaagagcggcccccatgactcgtag 432
Query: 470 ccgttgttga 479
||| ||||||
Sbjct: 433 ccgctgttga 442
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Minus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 598 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 539
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 538 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 479
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 478 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 419
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 418 taaccgctgttgatggcgt 400
>gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0017H01f, mRNA sequence
Length = 755
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Minus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 242 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 183
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 182 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 123
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 122 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 63
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 62 taaccgctgttgatggcgt 44
>gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20p06 3', mRNA sequence
Length = 509
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 273 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 332
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 333 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 392
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 393 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 452
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 453 taaccgctgttgatggcgt 471
>gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 5', mRNA sequence
Length = 577
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Minus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 215 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 156
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 155 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 96
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 95 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 36
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 35 taaccgctgttgatggcgt 17
>gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 3', mRNA sequence
Length = 528
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 314 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 373
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 374 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 433
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 434 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 493
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 494 taaccgctgttgatggcgt 512
>gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42j03 3', mRNA sequence
Length = 590
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 328 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 387
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 388 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 447
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 448 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 507
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 508 taaccgctgttgatggcgt 526
>gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
3-PRIME, mRNA sequence
Length = 539
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 175 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 234
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 235 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 294
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 295 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 354
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 355 taaccgctgttgatggcgt 373
>gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
5-PRIME, mRNA sequence
Length = 617
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Minus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 606 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 547
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 546 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 487
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 486 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 427
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 426 taaccgctgttgatggcgt 408
>gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
5-PRIME, mRNA sequence
Length = 638
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Minus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 606 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 547
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 546 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 487
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 486 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 427
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 426 taaccgctgttgatggcgt 408
>gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
3-PRIME, mRNA sequence
Length = 652
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 354 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 413
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 414 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 473
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 474 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 533
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 534 taaccgctgttgatggcgt 552
>gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
3-PRIME, mRNA sequence
Length = 654
Score = 133 bits (67), Expect = 6e-030
Identities = 166/199 (83%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 355 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 414
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 415 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 474
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 475 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 534
Query: 467 tacccgttgttgatggcgt 485
|| ||| ||||||||||||
Sbjct: 535 taaccgctgttgatggcgt 553
>gb|BI956576.1|BI956576 HVSMEn0004D17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004D17f, mRNA sequence
Length = 792
Score = 127 bits (64), Expect = 4e-028
Identities = 115/132 (87%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
|||||||| |||||||||||||| | ||||||||||||||||| ||||| || ||||||
Sbjct: 263 atgaaggggtcgatcctgacccacacaagggagaagatggaggcgagcaggacagaccag 322
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
|| || | |||||||||||||||||||| | ||| |||||||||| | ||||||||| |
Sbjct: 323 atcacagcgatggtgggcgtccggttctgcctcccgatgagcccctgggggaacgggtcg 382
Query: 407 aggtggacgatg 418
||||||||||||
Sbjct: 383 aggtggacgatg 394
>gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c07 3', mRNA sequence
Length = 611
Score = 127 bits (64), Expect = 4e-028
Identities = 167/200 (83%), Gaps = 1/200 (0%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 347 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 406
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 407 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 466
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| || |||||||||||||| || |||
Sbjct: 467 agatggaggatcacccagattgagaagaagagctttccaaagagcgggccccaggattgg 526
Query: 467 t-acccgttgttgatggcgt 485
| ||||| ||||||||||||
Sbjct: 527 taacccgctgttgatggcgt 546
>gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01L16
5-PRIME, mRNA sequence
Length = 403
Score = 121 bits (61), Expect = 2e-026
Identities = 163/197 (82%)
Strand = Plus / Minus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | ||||| || ||||||||||||||||| || || | ||||||
Sbjct: 277 atgaaagggtcgatcttcacccacaggagggagaagatggaggctaggaggatggaccaa 218
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| | ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 217 acaatgacgatggttggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 158
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactgg 466
|| |||| ||| ||||||| | |||||||||||| |||||||| || ||||| ||||||
Sbjct: 157 agatggaggatcacccagattgagaagaagagctttccgaagagtggaccccaagactgg 98
Query: 467 tacccgttgttgatggc 483
|| ||| ||||||||||
Sbjct: 97 taaccgctgttgatggc 81
Score = 38.2 bits (19), Expect = 0.28
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 238 tcagcagttgatgccacactgcc 260
||||||||||| |||||||||||
Sbjct: 329 tcagcagttgacgccacactgcc 307
>gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 3', mRNA sequence
Length = 505
Score = 115 bits (58), Expect = 1e-024
Identities = 154/186 (82%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||||| || || || | || ||||| ||| || ||||| |||
Sbjct: 162 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 221
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| |||||||| || ||||| |||||||||||||| ||||| | ||||| || ||||||
Sbjct: 222 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 281
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||| ||||| ||||| ||||| || ||| ||||||| |||
Sbjct: 282 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgatcgcg 341
Query: 485 tcggag 490
| ||||
Sbjct: 342 taggag 347
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 115 bits (58), Expect = 1e-024
Identities = 154/186 (82%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||||| || || || | || ||||| ||| || ||||| |||
Sbjct: 218 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 277
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| |||||||| || ||||| |||||||||||||| ||||| | ||||| || ||||||
Sbjct: 278 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 337
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||| ||||| ||||| ||||| || ||| ||||||| |||
Sbjct: 338 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgatgttgatcgcg 397
Query: 485 tcggag 490
| ||||
Sbjct: 398 taggag 403
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 115 bits (58), Expect = 1e-024
Identities = 154/186 (82%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||||| || || || | || ||||| ||| || ||||| |||
Sbjct: 225 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 284
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| |||||||| || ||||| |||||||||||||| ||||| | ||||| || ||||||
Sbjct: 285 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 344
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||| ||||| ||||| ||||| || ||| ||||||| |||
Sbjct: 345 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgatgttgatcgcg 404
Query: 485 tcggag 490
| ||||
Sbjct: 405 taggag 410
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 115 bits (58), Expect = 1e-024
Identities = 154/186 (82%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||||| || || || | || ||||| ||| || ||||| |||
Sbjct: 455 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 396
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| |||||||| || ||||| |||||||||||||| ||||| | ||||| || ||||||
Sbjct: 395 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 336
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||| ||||| ||||| ||||| || ||| ||||||| |||
Sbjct: 335 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgatcgcg 276
Query: 485 tcggag 490
| ||||
Sbjct: 275 taggag 270
>gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H16
5-PRIME, mRNA sequence
Length = 471
Score = 115 bits (58), Expect = 1e-024
Identities = 154/186 (82%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||||| || || || | || ||||| ||| || ||||| |||
Sbjct: 225 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 166
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| |||||||| || ||||| |||||||||||||| ||||| | ||||| || ||||||
Sbjct: 165 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 106
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||| ||||| ||||| ||||| || ||| ||||||| |||
Sbjct: 105 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgatcgcg 46
Query: 485 tcggag 490
| ||||
Sbjct: 45 taggag 40
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 115 bits (58), Expect = 1e-024
Identities = 154/186 (82%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||||| || || || | || ||||| ||| || ||||| |||
Sbjct: 449 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 390
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| |||||||| || ||||| |||||||||||||| ||||| | ||||| || ||||||
Sbjct: 389 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 330
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||| ||||| ||||| ||||| || ||| ||||||| |||
Sbjct: 329 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgatcgcg 270
Query: 485 tcggag 490
| ||||
Sbjct: 269 taggag 264
>gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF13B10
5-PRIME, mRNA sequence
Length = 622
Score = 115 bits (58), Expect = 1e-024
Identities = 154/186 (82%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||||| || || || | || ||||| ||| || ||||| |||
Sbjct: 616 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 557
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| |||||||| || ||||| |||||||||||||| ||||| | ||||| || ||||||
Sbjct: 556 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 497
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||| ||||| ||||| ||||| || ||| ||||||| |||
Sbjct: 496 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgatcgcg 437
Query: 485 tcggag 490
| ||||
Sbjct: 436 taggag 431
>gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
3-PRIME, mRNA sequence
Length = 651
Score = 115 bits (58), Expect = 1e-024
Identities = 154/186 (82%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||||| || || || | || ||||| ||| || ||||| |||
Sbjct: 218 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 277
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| |||||||| || ||||| |||||||||||||| ||||| | ||||| || ||||||
Sbjct: 278 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 337
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||| ||||| ||||| ||||| || ||| ||||||| |||
Sbjct: 338 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgatcgcg 397
Query: 485 tcggag 490
| ||||
Sbjct: 398 taggag 403
>gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX10P19
3-PRIME, mRNA sequence
Length = 616
Score = 115 bits (58), Expect = 1e-024
Identities = 154/186 (82%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||||| || || || | || ||||| ||| || ||||| |||
Sbjct: 161 acccacagcaaggagaagatggatgcaagaaggatggcccagacgacaacgatggtcggc 220
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| |||||||| || ||||| |||||||||||||| ||||| | ||||| || ||||||
Sbjct: 221 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 280
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||| ||||| ||||| ||||| || ||| ||||||| |||
Sbjct: 281 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgatcgcg 340
Query: 485 tcggag 490
| ||||
Sbjct: 341 taggag 346
>gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC008.H06, mRNA sequence
Length = 527
Score = 111 bits (56), Expect = 2e-023
Identities = 157/190 (82%), Gaps = 1/190 (0%)
Strand = Plus / Minus
Query: 296 tcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacgaca 355
|||||| | |||||||| |||||||||| |||||| || || | ||||| | | |||
Sbjct: 323 tcgatcttcacccagaggagggagaaga-ggaggcgaggaggatcgaccaaacnatgacn 265
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
||||| ||||| |||||||| ||||||||| ||||||||||| |||||||| |||| |
Sbjct: 264 atggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtagagatggagg 205
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttg 475
|| ||||||| | |||||||||||| || |||||||||||||| || ||||| ||| ||
Sbjct: 204 atcacccagattgagaagaagagctttccaaagagcgggccccaggattggtaaccgctg 145
Query: 476 ttgatggcgt 485
||||||||||
Sbjct: 144 ttgatggcgt 135
>gb|BQ661318.1|BQ661318 HM02P11u HM Hordeum vulgare subsp. vulgare cDNA clone HM02P11
3-PRIME, mRNA sequence
Length = 468
Score = 109 bits (55), Expect = 9e-023
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 290 aagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatg 349
||||| |||||| |||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct: 358 aaggggtcgatcttgacccagaggagggagaagaccgaggccagcaggacggaccagagt 417
Query: 350 acgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaac 400
| ||| |||||||| ||||||||||| || |||||||| ||||||||||||
Sbjct: 418 atgacgatggtgggagtccggttctgccggcccatgagacccttgaggaac 468
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 107 bits (54), Expect = 4e-022
Identities = 153/186 (82%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||| | || || || | || ||||| ||| || ||||| |||
Sbjct: 544 acccacagcaaggagaagatgtatgcaagaaggatggcccagacgacaacgatggtcggc 485
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| |||||||| || ||||| |||||||||||||| ||||| | ||||| || ||||||
Sbjct: 484 gtgcggttctgccgtcccattagccccttgaggaatgggtacaagtggataatcacccag 425
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||| ||||| ||||| ||||| || ||| ||||||| |||
Sbjct: 424 aaggcaaagaagagcttcccgaaaagcggtccccatgactgatagccgctgttgatcgcg 365
Query: 485 tcggag 490
| ||||
Sbjct: 364 taggag 359
>gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21u 3', mRNA sequence
Length = 644
Score = 103 bits (52), Expect = 6e-021
Identities = 139/168 (82%)
Strand = Plus / Plus
Query: 287 atgaagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccag 346
||||| || |||||| | |||||||| ||||||||||||||||| || || | |||||
Sbjct: 384 atgaaagggtcgatcttcacccagaggagggagaagatggaggcgaggaggatcgaccaa 443
Query: 347 atgacgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtag 406
| || ||| ||||| ||||| |||||||| ||||||||| ||||||||||| ||||||
Sbjct: 444 acgatgacgatggtcggcgtgcggttctgcttccccatgagacccttgaggaaggggtag 503
Query: 407 aggtggacgatgacccagaaggcgaagaagagcttgccgaagagcggg 454
|| |||| ||| ||||||| | |||||||||||| || |||||||||
Sbjct: 504 agatggaggatcacccagattgagaagaagagctttccaaagagcggg 551
>gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42j03 5', mRNA sequence
Length = 685
Score = 97.6 bits (49), Expect = 4e-019
Identities = 91/105 (86%)
Strand = Plus / Minus
Query: 381 ccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagct 440
||||||| ||||||||||| |||||||| |||| ||| ||||||| | |||||||||||
Sbjct: 685 ccatgagacccttgaggaaggggtagagatggaggatcacccagattgagaagaagagct 626
Query: 441 tgccgaagagcgggccccacgactggtacccgttgttgatggcgt 485
| || |||||||||||||| || ||||| ||| ||||||||||||
Sbjct: 625 ttccaaagagcgggccccaggattggtaaccgctgttgatggcgt 581
>gb|BI956663.1|BI956663 HVSMEn0004K08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004K08f, mRNA sequence
Length = 882
Score = 95.6 bits (48), Expect = 1e-018
Identities = 139/170 (81%)
Strand = Plus / Plus
Query: 290 aagggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatg 349
||||| || ||| ||||||| || |||||||||| ||||||| ||| |||||||| |
Sbjct: 387 aaggggtcnatcttgacccaaaggagggagaagaccgaggccancaggacggaccaaagt 446
Query: 350 acgacaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagagg 409
| ||| |||||||| ||||||||||| || |||||||| ||||||||||||||||| |||
Sbjct: 447 atgacgatggtgggagtccggttctgccggcccatgagacccttgaggaacgggtacagg 506
Query: 410 tggacgatgacccagaaggcgaagaagagcttgccgaagagcgggcccca 459
| | || ||||| | || |||||| | |||||| |||||||| |||||
Sbjct: 507 ggcataatcacccacatggagaagaacaccttgcccaagagcggccccca 556
>gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E20f, mRNA sequence
Length = 681
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 400 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 459
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 460 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 519
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 520 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 579
Query: 485 tcggag 490
| ||||
Sbjct: 580 taggag 585
>gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 5', mRNA sequence
Length = 631
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 434 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 375
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 374 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 315
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 314 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 255
Query: 485 tcggag 490
| ||||
Sbjct: 254 taggag 249
>gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 5', mRNA sequence
Length = 604
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 433 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 374
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 373 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 314
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 313 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 254
Query: 485 tcggag 490
| ||||
Sbjct: 253 taggag 248
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 615 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 556
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 555 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 496
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 495 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 436
Query: 485 tcggag 490
| ||||
Sbjct: 435 taggag 430
>gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 3', mRNA sequence
Length = 598
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 362 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 421
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 422 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 481
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 482 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 541
Query: 485 tcggag 490
| ||||
Sbjct: 542 taggag 547
>gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 3', mRNA sequence
Length = 649
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 322 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 381
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 382 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 441
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 442 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 501
Query: 485 tcggag 490
| ||||
Sbjct: 502 taggag 507
>gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 3', mRNA sequence
Length = 631
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 379 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 438
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 439 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 498
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 499 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 558
Query: 485 tcggag 490
| ||||
Sbjct: 559 taggag 564
>gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 3', mRNA sequence
Length = 680
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 379 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 438
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 439 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 498
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 499 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 558
Query: 485 tcggag 490
| ||||
Sbjct: 559 taggag 564
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 622 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 563
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 562 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 503
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 502 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 443
Query: 485 tcggag 490
| ||||
Sbjct: 442 taggag 437
>gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 3', mRNA sequence
Length = 604
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 245 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 304
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 305 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 364
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 365 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 424
Query: 485 tcggag 490
| ||||
Sbjct: 425 taggag 430
>gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 3', mRNA sequence
Length = 650
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 379 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 438
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 439 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 498
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 499 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 558
Query: 485 tcggag 490
| ||||
Sbjct: 559 taggag 564
>gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10e13 3', mRNA sequence
Length = 616
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 365 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 424
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 425 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 484
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 485 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 544
Query: 485 tcggag 490
| ||||
Sbjct: 545 taggag 550
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 575 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 516
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 515 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 456
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 455 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 396
Query: 485 tcggag 490
| ||||
Sbjct: 395 taggag 390
>gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31h15 3', mRNA sequence
Length = 669
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Plus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 338 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 397
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 398 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 457
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 458 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 517
Query: 485 tcggag 490
| ||||
Sbjct: 518 taggag 523
>gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
5-PRIME, mRNA sequence
Length = 643
Score = 91.7 bits (46), Expect = 2e-017
Identities = 151/186 (81%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| ||||||||| || ||||| || || | ||||| || |||||| || ||
Sbjct: 432 acccacagcaaggagaagattgaagccaggaggacagcccagacgatgacaatcgtcggt 373
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|| ||||| || | ||||| || ||||||||||| ||||| | ||| || || ||||||
Sbjct: 372 gtgcggttttgcctgcccataagacccttgaggaaggggtataagtgaacaatcacccag 313
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 312 aaggcaaagaagagcttcccgaagagcggcccccaagattggtaaccactgttgatggcg 253
Query: 485 tcggag 490
| ||||
Sbjct: 252 taggag 247
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,085
Number of Sequences: 312970
Number of extensions: 57085
Number of successful extensions: 16366
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 84
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16215
Number of HSP's gapped (non-prelim): 152
length of query: 526
length of database: 175,134,539
effective HSP length: 18
effective length of query: 508
effective length of database: 169,501,079
effective search space: 86106548132
effective search space used: 86106548132
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)