BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL3a04.xg.2.1
(369 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF622107.2|BF622107 HVSMEa0001M11f Hordeum vulgare seedl... 38 0.19
gb|BG342872.2|BG342872 HVSMEg0001B03f Hordeum vulgare pre-a... 38 0.19
gb|BM816351.1|BM816351 HB106B06_SK.ab1 HB Hordeum vulgare s... 38 0.19
gb|BM816352.1|BM816352 HB106C03_SK.ab1 HB Hordeum vulgare s... 38 0.19
gb|BJ447952.1|BJ447952 BJ447952 K. Sato unpublished cDNA li... 38 0.19
gb|BJ451061.1|BJ451061 BJ451061 K. Sato unpublished cDNA li... 38 0.19
gb|BJ453141.1|BJ453141 BJ453141 K. Sato unpublished cDNA li... 38 0.19
gb|BJ455697.1|BJ455697 BJ455697 K. Sato unpublished cDNA li... 38 0.19
gb|BJ456266.1|BJ456266 BJ456266 K. Sato unpublished cDNA li... 38 0.19
gb|BJ458566.1|BJ458566 BJ458566 K. Sato unpublished cDNA li... 38 0.19
gb|BJ460691.1|BJ460691 BJ460691 K. Sato unpublished cDNA li... 38 0.19
gb|BQ468531.1|BQ468531 HM01I09T HM Hordeum vulgare subsp. v... 38 0.19
>gb|BF622107.2|BF622107 HVSMEa0001M11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001M11f, mRNA sequence
Length = 595
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 74 ttcacctactgtgattacatatacggaacggataaaggctaca 116
>gb|BG342872.2|BG342872 HVSMEg0001B03f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001B03f, mRNA sequence
Length = 607
Score = 38.2 bits (19), Expect = 0.19
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 59 acaaacaaaggctacatgt 77
|||||||||||||||||||
Sbjct: 561 acaaacaaaggctacatgt 543
>gb|BM816351.1|BM816351 HB106B06_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106B06_SK.ab1 similar to (AC022464) F22G5.23
[Arabidopsis thaliana],(AC025783) putative C-4 sterol
methyl oxidase [Oryza sativa], mRNA sequence
Length = 918
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 532 ttcacctactgtgattacatatacggaacggataaaggctaca 574
>gb|BM816352.1|BM816352 HB106C03_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106C03_SK.ab1 similar to (AC022464) F22G5.23
[Arabidopsis thaliana],(AC025783) putative C-4 sterol
methyl oxidase [Oryza sativa], mRNA sequence
Length = 903
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 449 ttcacctactgtgattacatatacggaacggataaaggctaca 491
>gb|BJ447952.1|BJ447952 BJ447952 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17n22 5', mRNA sequence
Length = 606
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 28 ttcacctactgtgattacatatacggaacggataaaggctaca 70
>gb|BJ451061.1|BJ451061 BJ451061 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32i15 5', mRNA sequence
Length = 606
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 29 ttcacctactgtgattacatatacggaacggataaaggctaca 71
>gb|BJ453141.1|BJ453141 BJ453141 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41n13 5', mRNA sequence
Length = 614
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 56 ttcacctactgtgattacatatacggaacggataaaggctaca 98
>gb|BJ455697.1|BJ455697 BJ455697 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17n22 3', mRNA sequence
Length = 584
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 557 ttcacctactgtgattacatatacggaacggataaaggctaca 515
>gb|BJ456266.1|BJ456266 BJ456266 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20f03 3', mRNA sequence
Length = 610
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 259 ttcacctactgtgattacatatacggaacggataaaggctaca 217
>gb|BJ458566.1|BJ458566 BJ458566 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32i15 3', mRNA sequence
Length = 549
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 522 ttcacctactgtgattacatatacggaacggataaaggctaca 480
>gb|BJ460691.1|BJ460691 BJ460691 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41n13 3', mRNA sequence
Length = 541
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 486 ttcacctactgtgattacatatacggaacggataaaggctaca 444
>gb|BQ468531.1|BQ468531 HM01I09T HM Hordeum vulgare subsp. vulgare cDNA clone HM01I09
5-PRIME, mRNA sequence
Length = 640
Score = 38.2 bits (19), Expect = 0.19
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 32 ttcacgtactgtgattatatatacgggacaaacaaaggctaca 74
||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 508 ttcacctactgtgattacatatacggaacggataaaggctaca 550
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,692
Number of Sequences: 312970
Number of extensions: 19692
Number of successful extensions: 5232
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5220
Number of HSP's gapped (non-prelim): 12
length of query: 369
length of database: 175,134,539
effective HSP length: 18
effective length of query: 351
effective length of database: 169,501,079
effective search space: 59494878729
effective search space used: 59494878729
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)