BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL10h01.xg.2.1
(610 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ760822.1|BQ760822 EBro03_SQ003_J06_R root, 3 week, wat... 517 e-145
gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, wat... 486 e-136
gb|BM816111.1|BM816111 HC113E12_SK.ab1 HC Hordeum vulgare s... 468 e-130
gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare s... 373 e-102
gb|BQ767749.1|BQ767749 EBro08_SQ009_B20_R root, 3 week, dro... 349 7e-095
gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. v... 335 1e-090
gb|CA030559.1|CA030559 HX07G17r HX Hordeum vulgare subsp. v... 335 1e-090
gb|AL504934.1|AL504934 AL504934 Hordeum vulgare Barke roots... 283 3e-075
gb|BF630403.2|BF630403 HVSMEb0009B18f Hordeum vulgare seedl... 250 5e-065
gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedl... 250 5e-065
gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedl... 250 5e-065
gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedl... 250 5e-065
gb|BF620598.2|BF620598 HVSMEc0020F14f Hordeum vulgare seedl... 250 5e-065
gb|AV922899.1|AV922899 AV922899 K. Sato unpublished cDNA li... 250 5e-065
gb|AV924203.1|AV924203 AV924203 K. Sato unpublished cDNA li... 250 5e-065
gb|AV927108.1|AV927108 AV927108 K. Sato unpublished cDNA li... 250 5e-065
gb|BJ463118.1|BJ463118 BJ463118 K. Sato unpublished cDNA li... 250 5e-065
gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, red... 250 5e-065
emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotra... 250 5e-065
gb|BF263162.2|BF263162 HV_CEa0006A01f Hordeum vulgare seedl... 242 1e-062
gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedl... 242 1e-062
gb|BG300161.1|BG300161 HVSMEb0010K02f Hordeum vulgare seedl... 236 7e-061
gb|BF618866.2|BF618866 HVSMEc0008D05f Hordeum vulgare seedl... 236 7e-061
emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotr... 212 1e-053
gb|AV925293.1|AV925293 AV925293 K. Sato unpublished cDNA li... 206 6e-052
gb|BQ460993.1|BQ460993 HE01I24r HE Hordeum vulgare subsp. v... 206 6e-052
gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedl... 202 1e-050
gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedl... 196 6e-049
gb|BF629934.2|BF629934 HVSMEb0007F23f Hordeum vulgare seedl... 196 6e-049
gb|AV916008.1|AV916008 AV916008 K. Sato unpublished cDNA li... 196 6e-049
gb|CA008408.1|CA008408 HU10N24r HU Hordeum vulgare subsp. v... 196 6e-049
gb|BI958669.1|BI958669 HVSMEn0016C05f Hordeum vulgare rachi... 180 4e-044
gb|BI959766.1|BI959766 HVSMEn0021F17f Hordeum vulgare rachi... 170 3e-041
gb|BI958667.1|BI958667 HVSMEn0016C03f Hordeum vulgare rachi... 157 5e-037
gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachi... 155 2e-036
gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA li... 153 8e-036
gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA li... 153 8e-036
gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA li... 153 8e-036
gb|BG309526.2|BG309526 HVSMEc0010M24f Hordeum vulgare seedl... 135 2e-030
gb|BF259456.3|BF259456 HVSMEf0019C15f Hordeum vulgare seedl... 131 3e-029
gb|BI956298.1|BI956298 HVSMEn0002B22f Hordeum vulgare rachi... 129 1e-028
gb|BF627429.2|BF627429 HVSMEb0004N10f Hordeum vulgare seedl... 127 5e-028
gb|BF256171.2|BF256171 HVSMEf0008P16f Hordeum vulgare seedl... 123 7e-027
gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA li... 121 3e-026
gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA li... 119 1e-025
gb|BI958113.1|BI958113 HVSMEn0013H08f Hordeum vulgare rachi... 115 2e-024
gb|BI956580.1|BI956580 HVSMEn0004E02f Hordeum vulgare rachi... 111 3e-023
gb|BU971950.1|BU971950 HB20C15r BC Hordeum vulgare subsp. v... 109 1e-022
gb|BF618271.2|BF618271 HVSMEc0005D16f Hordeum vulgare seedl... 107 4e-022
gb|BI956297.1|BI956297 HVSMEn0002B20f Hordeum vulgare rachi... 107 4e-022
gb|BE422291.1|BE422291 HWM022cE.11r ITEC HWM Barley Leaf Li... 105 2e-021
gb|AV928124.1|AV928124 AV928124 K. Sato unpublished cDNA li... 105 2e-021
gb|BJ468727.1|BJ468727 BJ468727 K. Sato unpublished cDNA li... 105 2e-021
gb|CK122280.1|CK122280 BES1824102l14 BES1824 Hordeum vulgar... 101 3e-020
gb|BF625577.3|BF625577 HVSMEa0011I16f Hordeum vulgare seedl... 92 3e-017
gb|BF256444.2|BF256444 HVSMEf0009P18f Hordeum vulgare seedl... 86 2e-015
gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedl... 84 6e-015
gb|BF254604.1|BF254604 HVSMEf0004H21f Hordeum vulgare seedl... 82 2e-014
gb|CA023772.1|CA023772 HZ47F20r HZ Hordeum vulgare subsp. v... 78 4e-013
gb|CA024667.1|CA024667 HZ49P10r HZ Hordeum vulgare subsp. v... 78 4e-013
gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. v... 68 4e-010
gb|BM444292.1|BM444292 EBem09_SQ004_L15_R embryo, 1 Day ger... 66 1e-009
gb|BU998122.1|BU998122 HI10B03r HI Hordeum vulgare subsp. v... 66 1e-009
gb|CA031564.1|CA031564 HX10H03r HX Hordeum vulgare subsp. v... 66 1e-009
gb|CB883507.1|CB883507 HQ02H12w HQ Hordeum vulgare subsp. v... 66 1e-009
gb|BQ762342.1|BQ762342 EBro01_SQ005_F13_R root, 3 week, hyd... 64 6e-009
gb|BG309189.1|BG309189 HVSMEc0004M02f Hordeum vulgare seedl... 58 4e-007
gb|BG343074.1|BG343074 HVSMEg0001P08f Hordeum vulgare pre-a... 58 4e-007
gb|BI953155.1|BI953155 HVSMEm0011G01f Hordeum vulgare green... 58 4e-007
gb|BI954358.1|BI954358 HVSMEm0017G17f Hordeum vulgare green... 58 4e-007
gb|BE216242.1|BE216242 HV_CEb0009P07f Hordeum vulgare seedl... 58 4e-007
gb|BF267606.1|BF267606 HV_CEa0018G10f Hordeum vulgare seedl... 58 4e-007
gb|CA019178.1|CA019178 HV11B18r HV Hordeum vulgare subsp. v... 58 4e-007
gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. v... 58 4e-007
gb|AL450913.1|AL450913 AL450913 Hordeum vulgare Barke etiol... 56 1e-006
gb|AL500119.1|AL500119 AL500119 Hordeum vulgare Barke etiol... 56 1e-006
gb|AL500129.1|AL500129 AL500129 Hordeum vulgare Barke etiol... 56 1e-006
gb|BI777946.1|BI777946 EBro07_SQ001_H07_R root, 3 week, red... 56 1e-006
gb|BF624089.2|BF624089 HVSMEa0009G06f Hordeum vulgare seedl... 56 1e-006
gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedl... 56 1e-006
gb|BF626739.2|BF626739 HVSMEb0001D16f Hordeum vulgare seedl... 56 1e-006
gb|BF628380.2|BF628380 HVSMEb0003O02f Hordeum vulgare seedl... 56 1e-006
gb|BF629930.2|BF629930 HVSMEb0007F19f Hordeum vulgare seedl... 56 1e-006
gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedl... 56 1e-006
gb|BG300865.1|BG300865 HVSMEb0018L19f Hordeum vulgare seedl... 56 1e-006
gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedl... 56 1e-006
gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedl... 56 1e-006
gb|BF260656.2|BF260656 HVSMEf0022J12f Hordeum vulgare seedl... 56 1e-006
gb|BF260946.2|BF260946 HVSMEf0023F18f Hordeum vulgare seedl... 56 1e-006
gb|BE060552.2|BE060552 HVSMEg0012J20f Hordeum vulgare pre-a... 56 1e-006
gb|BI958106.1|BI958106 HVSMEn0013G22f Hordeum vulgare rachi... 56 1e-006
gb|BQ460689.1|BQ460689 HA06D17r HA Hordeum vulgare subsp. v... 56 1e-006
gb|BQ462941.1|BQ462941 HI02H24r HI Hordeum vulgare subsp. v... 56 1e-006
gb|BQ467526.1|BQ467526 HS04B01r HS Hordeum vulgare subsp. v... 56 1e-006
gb|BQ467998.1|BQ467998 HR01J18r HR Hordeum vulgare subsp. v... 56 1e-006
gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, red... 56 1e-006
gb|BQ764772.1|BQ764772 EBca01_SQ004_H24_R carpel, pre-anthe... 56 1e-006
gb|BU997685.1|BU997685 HI08L09r HI Hordeum vulgare subsp. v... 56 1e-006
gb|BU997928.1|BU997928 HI09H06r HI Hordeum vulgare subsp. v... 56 1e-006
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 56 1e-006
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 56 1e-006
gb|AW982395.1|AW982395 HVSMEg0003C13f Hordeum vulgare pre-a... 52 2e-005
gb|BG368127.1|BG368127 HVSMEi0015M23f Hordeum vulgare 20 DA... 52 2e-005
gb|BU996830.1|BU996830 HM14O16r HM Hordeum vulgare subsp. v... 52 2e-005
gb|AL450643.1|AL450643 AL450643 Hordeum vulgare Barke etiol... 50 9e-005
gb|AL500197.1|AL500197 AL500197 Hordeum vulgare Barke etiol... 50 9e-005
gb|BI956177.1|BI956177 HVSMEm0025O16f Hordeum vulgare green... 50 9e-005
gb|BI960618.1|BI960618 HVSMEn0025G09f Hordeum vulgare rachi... 50 9e-005
gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA li... 50 9e-005
gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA li... 50 9e-005
gb|CA007079.1|CA007079 HU06K21r HU Hordeum vulgare subsp. v... 50 9e-005
gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiol... 48 3e-004
gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedl... 48 3e-004
gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedl... 48 3e-004
gb|BG365090.1|BG365090 HVSMEi0001D21f Hordeum vulgare 20 DA... 48 3e-004
gb|BI956709.1|BI956709 HVSMEn0004O06f Hordeum vulgare rachi... 48 3e-004
gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-a... 48 3e-004
gb|BM370804.2|BM370804 EBro04_SQ002_F05_R root, 3 week, sal... 48 3e-004
gb|BQ759958.1|BQ759958 EBpi05_SQ004_P23_R pistil, 8 DPA, no... 48 3e-004
gb|BQ764817.1|BQ764817 EBca01_SQ005_A06_R carpel, pre-anthe... 48 3e-004
gb|CA027653.1|CA027653 HZ59J16r HZ Hordeum vulgare subsp. v... 48 3e-004
gb|BF256789.2|BF256789 HVSMEf0011A08f Hordeum vulgare seedl... 46 0.001
gb|BG300155.1|BG300155 HVSMEb0010I18f Hordeum vulgare seedl... 44 0.005
gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. v... 42 0.021
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 42 0.021
gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, wat... 42 0.021
gb|CA020574.1|CA020574 HZ36L09r HZ Hordeum vulgare subsp. v... 42 0.021
gb|CA024504.1|CA024504 HZ49H21r HZ Hordeum vulgare subsp. v... 42 0.021
gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. v... 42 0.021
gb|CB877582.1|CB877582 HP05H06T HP Hordeum vulgare subsp. v... 42 0.021
gb|BI957177.1|BI957177 HVSMEn0007P14f Hordeum vulgare rachi... 40 0.083
gb|AL450919.1|AL450919 AL450919 Hordeum vulgare Barke etiol... 38 0.33
gb|AL500052.1|AL500052 AL500052 Hordeum vulgare Barke etiol... 38 0.33
gb|AL503674.1|AL503674 AL503674 Hordeum vulgare Barke roots... 38 0.33
gb|BF623367.2|BF623367 HVSMEa0015K08f Hordeum vulgare seedl... 38 0.33
gb|BF627004.2|BF627004 HVSMEb0001P03f Hordeum vulgare seedl... 38 0.33
gb|BF627541.2|BF627541 HVSMEb0005C03f Hordeum vulgare seedl... 38 0.33
gb|BF629221.2|BF629221 HVSMEb0010F24f Hordeum vulgare seedl... 38 0.33
gb|BF618456.2|BF618456 HVSMEc0005L21f Hordeum vulgare seedl... 38 0.33
gb|BF618579.2|BF618579 HVSMEc0006G01f Hordeum vulgare seedl... 38 0.33
gb|BF620035.2|BF620035 HVSMEc0011F01f Hordeum vulgare seedl... 38 0.33
gb|BI960420.1|BI960420 HVSMEn0024I16f Hordeum vulgare rachi... 38 0.33
gb|BF627685.3|BF627685 HVSMEb0005I10f Hordeum vulgare seedl... 38 0.33
gb|BE455947.3|BE455947 HVSMEg0017N10f Hordeum vulgare pre-a... 38 0.33
gb|BE195774.3|BE195774 HVSMEh0090G19f Hordeum vulgare 5-45 ... 38 0.33
gb|BQ461043.1|BQ461043 HE01F23r HE Hordeum vulgare subsp. v... 38 0.33
gb|BQ462553.1|BQ462553 HI01E04T HI Hordeum vulgare subsp. v... 38 0.33
gb|BQ462594.1|BQ462594 HI01G12T HI Hordeum vulgare subsp. v... 38 0.33
gb|BQ467575.1|BQ467575 HS04D13r HS Hordeum vulgare subsp. v... 38 0.33
gb|BQ662128.1|BQ662128 HR01K20u HR Hordeum vulgare subsp. v... 38 0.33
gb|BU997613.1|BU997613 HI08H24r HI Hordeum vulgare subsp. v... 38 0.33
gb|CA001720.1|CA001720 HS05G04r HS Hordeum vulgare subsp. v... 38 0.33
gb|CA003718.1|CA003718 HS15F14r HS Hordeum vulgare subsp. v... 38 0.33
gb|CA003908.1|CA003908 HS15O19r HS Hordeum vulgare subsp. v... 38 0.33
gb|CA022401.1|CA022401 HZ43A12r HZ Hordeum vulgare subsp. v... 38 0.33
gb|CA023472.1|CA023472 HZ46F16r HZ Hordeum vulgare subsp. v... 38 0.33
gb|CA027287.1|CA027287 HZ58H04r HZ Hordeum vulgare subsp. v... 38 0.33
>gb|BQ760822.1|BQ760822 EBro03_SQ003_J06_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_J06 5', mRNA sequence
Length = 646
Score = 517 bits (261), Expect = e-145
Identities = 378/415 (91%), Gaps = 4/415 (0%)
Strand = Plus / Plus
Query: 137 tcttgcacgccgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggca 196
||||||| ||||||||||||||||| | |||| |||| |||||||| |||||||||||
Sbjct: 116 tcttgcaggccgcctcggccaagtcct---ggctcgacaagaggttcaacacggacggca 172
Query: 197 ccgtccgcacgggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagc 256
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct: 173 ccgtccgcacgggatacgacgcctcgggccagcaggtggtgatgctcaacctcaaccagc 232
Query: 257 actccggcgctgccggcttcaact-ccaaggagcagtacctttacggcgagttcagcgtc 315
| |||||||| ||||||||||||| ||||| |||||||||| || || ||||||||| ||
Sbjct: 233 aatccggcgccgccggcttcaacttccaagcagcagtacctctatggtgagttcagcatc 292
Query: 316 gagatgaagctcatccgggggaactccgccggcaccgtctcgtgcttctacctctcttcc 375
||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 293 cagatgaagctcatcccggggaactccgctggcaccgtctcctgcttctacctttcttcc 352
Query: 376 ggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcag 435
|| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 353 ggtgacgacgagtggcgcgacgagatcgacatggagttcatgggcaactccagcggccat 412
Query: 436 ccggtggtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttc 495
||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 413 ccggtggtgctcaacacgaacgtgtgggccaacggcgacggcaagaaggagcaccagttc 472
Query: 496 gacctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 473 gacctctggttcgaccccgccgccgactaccacacctacaccatcatctggaacc 527
>gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_J09 5', mRNA sequence
Length = 729
Score = 486 bits (245), Expect = e-136
Identities = 341/373 (91%)
Strand = Plus / Plus
Query: 178 aggttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtg 237
||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 150 aggttcaacaccgacggcaccgtccgcaccggatacgacgcctcgggccagcaggtggtt 209
Query: 238 atgctccgcctcgaccagcactccggcgctgccggcttcaactccaaggagcagtacctt 297
|||||| |||| ||||||| |||||||| ||||| |||||||||||| ||||||||||
Sbjct: 210 atgctcaacctcaaccagcaatccggcgccgccggattcaactccaagcagcagtacctc 269
Query: 298 tacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcg 357
||||||||||||||| || ||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 270 tacggcgagttcagcatccagatgaagctcatcccgggaaactccgccggcaccgtctcc 329
Query: 358 tgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatg 417
||||||||||| |||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct: 330 tgcttctacctttcttccggtgacgacgagtggcgcgacgagatcgacatggagttcatg 389
Query: 418 ggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggc 477
|||||||| ||||| || ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 390 ggcaactccagcggccacccggtggtgctcaacaccaacgtgtgggccaacggcgacggc 449
Query: 478 aagaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacc 537
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 450 aagaaggagcaccagttcgacctctggttcgacccagccgcagactaccacacctacacc 509
Query: 538 atcatctggaacc 550
|||||||||||||
Sbjct: 510 atcatctggaacc 522
>gb|BM816111.1|BM816111 HC113E12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113E12_SK.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 858
Score = 468 bits (236), Expect = e-130
Identities = 370/414 (89%), Gaps = 3/414 (0%)
Strand = Plus / Plus
Query: 137 tcttgcacgccgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggca 196
||||||| ||||||||||||||||| | |||| |||| ||||||| ||||||||| |
Sbjct: 150 tcttgcaggccgcctcggccaagtcct---ggctcgacaataggttcaacacggacggta 206
Query: 197 ccgtccgcacgggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagc 256
||||||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct: 207 ccgtccgtacgggatacgacgcctcgggccagcaggtggtgatgctcaacctcaaccagc 266
Query: 257 actccggcgctgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcg 316
| |||||||| |||||||||||||||||| | |||||||| || || ||||| ||| ||
Sbjct: 267 aatccggcgccgccggcttcaactccaagcaacagtacctctatggtgagtttagcatcc 326
Query: 317 agatgaagctcatccgggggaactccgccggcaccgtctcgtgcttctacctctcttccg 376
| ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 327 acatgaagctcatcccggggaactccgccggcaccgtctcctgcttctacctttcttccg 386
Query: 377 gcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagc 436
| |||| ||| ||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct: 387 gtgacgacgagtggcgcgacgagatcgacatggagttcatgggcaactccatcggccata 446
Query: 437 cggtggtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcg 496
|||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 447 cggtggtgctcaacacgaacgtgtgggccaacggcgacggcaagaaggagcaccagttcg 506
Query: 497 acctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 507 acctctggttcgaccccgccgacgactaccacacctacaccatcatctggaacc 560
>gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111H09_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 918
Score = 373 bits (188), Expect = e-102
Identities = 330/377 (87%), Gaps = 9/377 (2%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||| ||||| ||||||||||||| ||| || |||||||||||||
Sbjct: 177 gttcaacacggacggcaatgtccggacgggatacgacgcttctgggcagcaggtggtgac 236
Query: 240 gctccgcctcgaccagcactccggcgctgccggcttcaactccaaggagcagtaccttta 299
|||| |||||||||||||||| ||||| ||||||||||||| | ||||| ||||| ||
Sbjct: 237 gctcagcctcgaccagcactcaggcgc---cggcttcaactccgatgagcaatacctcta 293
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
||| ||||||||| || ||||||||||||||| ||| ||||| ||||||||||| || ||
Sbjct: 294 cggtgagttcagcatccagatgaagctcatcccgggaaactcggccggcaccgtatcctg 353
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
||||||||| |||||||| || || ||||||| |||||||||||||||||||||||||||
Sbjct: 354 cttctacctttcttccggtgatggagacgggcacgacgagatcgacatggagttcatggg 413
Query: 420 caactcgag------cgggcagccggtggtgctgaacaccaacgtgtgggccagcggcga 473
|||||| || || || ||||| ||||| ||||||||||| |||| || ||||||
Sbjct: 414 caactccagtggccctggccatccggtagtgctcaacaccaacgtctgggtcaacggcga 473
Query: 474 cggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccacaccta 533
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 474 tggcaagaaggagcaccagttcgacctctggttcgaccccgccgccgactaccacaccta 533
Query: 534 caccatcatctggaacc 550
|||||||||||||||||
Sbjct: 534 caccatcatctggaacc 550
>gb|BQ767749.1|BQ767749 EBro08_SQ009_B20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_B20 5', mRNA sequence
Length = 516
Score = 349 bits (176), Expect = 7e-095
Identities = 327/377 (86%), Gaps = 9/377 (2%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||| ||||| ||||||||||||| ||| || ||||| |||||||
Sbjct: 138 gttcaacacggacggcaatgtccggacgggatacgacgtttctgggcagcaagtggtgac 197
Query: 240 gctccgcctcgaccagcactccggcgctgccggcttcaactccaaggagcagtaccttta 299
|||| |||||||||||||||| |||| ||||||||||||| | ||||| ||||| ||
Sbjct: 198 gctcagcctcgaccagcactcaagcgc---cggcttcaactccgatgagcaatacctcta 254
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
||| ||||||||| || ||||||||||||||| ||| ||||| ||||||||||| || ||
Sbjct: 255 cggtgagttcagcatccagatgaagctcatcccgggaaactcggccggcaccgtatcctg 314
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
||||||||| |||||||| || || ||||||| |||||||||||||||||||||||||||
Sbjct: 315 cttctacctttcttccggtgatggagacgggcacgacgagatcgacatggagttcatggg 374
Query: 420 caactcgag------cgggcagccggtggtgctgaacaccaacgtgtgggccagcggcga 473
|||||| || || || ||||| ||||| ||||||||||| |||| || ||||||
Sbjct: 375 caactccagtggccctggccatccggtagtgctcaacaccaacgtctgggtcaacggcga 434
Query: 474 cggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccacaccta 533
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 435 tggcaagaaggagcaccacttcgacctctggttcgaccccgccgccgactaccacaccta 494
Query: 534 caccatcatctggaacc 550
|||||||||||||||||
Sbjct: 495 caccatcatctggaacc 511
>gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45I10
5-PRIME, mRNA sequence
Length = 518
Score = 335 bits (169), Expect = 1e-090
Identities = 238/261 (91%)
Strand = Plus / Plus
Query: 290 agtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggca 349
||||||| ||||||||||||||| || ||||||||||| ||| || |||||||||||||
Sbjct: 29 agtacctctacggcgagttcagcatccagatgaagctcgtccccggcaactccgccggca 88
Query: 350 ccgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatgg 409
||||| | | ||||||||| || || ||||||||| ||||| |||||||||||||||||
Sbjct: 89 ccgtcacctccttctacctgtcgtcgggcgacggccccgggcacgacgagatcgacatgg 148
Query: 410 agttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcg 469
|||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 149 agttcatgggcaactccacggggcagccggtggtgctcaacaccaacgtgtgggccaacg 208
Query: 470 gcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccaca 529
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 209 gcgacggcaagaaggagcaccagttcgacctctggttcgacccggccgccgactaccaca 268
Query: 530 cctacaccatcatctggaacc 550
|||||||||||||||||||||
Sbjct: 269 cctacaccatcatctggaacc 289
>gb|CA030559.1|CA030559 HX07G17r HX Hordeum vulgare subsp. vulgare cDNA clone HX07G17
5-PRIME, mRNA sequence
Length = 634
Score = 335 bits (169), Expect = 1e-090
Identities = 238/261 (91%)
Strand = Plus / Plus
Query: 290 agtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggca 349
||||||| ||||||||||||||| || ||||||||||| ||| || |||||||||||||
Sbjct: 270 agtacctctacggcgagttcagcatccagatgaagctcgtccccggcaactccgccggca 329
Query: 350 ccgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatgg 409
||||| | | ||||||||| || || ||||||||| ||||| |||||||||||||||||
Sbjct: 330 ccgtcacctccttctacctgtcgtcgggcgacggccccgggcacgacgagatcgacatgg 389
Query: 410 agttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcg 469
|||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 390 agttcatgggcaactccacggggcagccggtggtgctcaacaccaacgtgtgggccaacg 449
Query: 470 gcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccaca 529
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 450 gcgacggcaagaaggagcaccagttcgacctctggttcgacccggccgccgactaccaca 509
Query: 530 cctacaccatcatctggaacc 550
|||||||||||||||||||||
Sbjct: 510 cctacaccatcatctggaacc 530
>gb|AL504934.1|AL504934 AL504934 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06N22V 5', mRNA sequence
Length = 556
Score = 283 bits (143), Expect = 3e-075
Identities = 247/279 (88%), Gaps = 5/279 (1%)
Strand = Plus / Plus
Query: 137 tcttgcacgccgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggca 196
||||||| |||| |||||||||||| | |||| |||| |||||||| |||||||||||
Sbjct: 254 tcttgcaggccgnctcggccaagtcct---ggctcgacaagaggttcaacacggacggca 310
Query: 197 ccgtccgcacgggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagc 256
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct: 311 ccgtccgcacgggatacgacgcctcgggccagcaggtggtgatgctcaacctcaaccagc 370
Query: 257 actccggcgctgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcg 316
| |||||||| |||||||||||||||||| |||||||||| || || ||||||||| ||
Sbjct: 371 aatccggcgccgccggcttcaactccaagcagcagtacctctatggtgagttcagcatcc 430
Query: 317 agatgaagctcatccgggggaactccgccggcaccgtctcgtgcttctacctctcttccg 376
||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 431 agatgaagctcatcccggggaactccgctggcaccgtctcctgcttctacctttcttccg 490
Query: 377 gcgacggcgacg-ggcg-cgacgagatcgacatggagtt 413
| |||| ||| | |||| |||| ||||||||||||||||
Sbjct: 491 gtgacgacgaagtggcgccgacnagatcgacatggagtt 529
>gb|BF630403.2|BF630403 HVSMEb0009B18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009B18f, mRNA sequence
Length = 725
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 251 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 310
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 311 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 370
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 371 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 430
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 431 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 490
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 491 accccaccgccgacttccacacctacaagatcgtctggaacc 532
>gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012E18f, mRNA sequence
Length = 715
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 246 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 305
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 306 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 365
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 366 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 425
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 426 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 485
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 486 accccaccgccgacttccacacctacaagatcgtctggaacc 527
>gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0014N08f, mRNA sequence
Length = 759
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 243 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 302
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 303 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 362
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 363 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 422
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 423 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 482
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 483 accccaccgccgacttccacacctacaagatcgtctggaacc 524
>gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015A04f, mRNA sequence
Length = 755
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 243 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 302
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 303 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 362
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 363 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 422
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 423 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 482
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 483 accccaccgccgacttccacacctacaagatcgtctggaacc 524
>gb|BF620598.2|BF620598 HVSMEc0020F14f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0020F14f, mRNA sequence
Length = 882
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 236 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 295
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 296 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 355
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 356 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 415
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 416 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 475
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 476 accccaccgccgacttccacacctacaagatcgtctggaacc 517
>gb|AV922899.1|AV922899 AV922899 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2n22 5', mRNA sequence
Length = 642
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 249 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 308
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 309 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 368
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 369 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 428
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 488
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 489 accccaccgccgacttccacacctacaagatcgtctggaacc 530
>gb|AV924203.1|AV924203 AV924203 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11l14 5', mRNA sequence
Length = 572
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 249 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 308
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 309 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 368
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 369 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 428
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 488
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 489 accccaccgccgacttccacacctacaagatcgtctggaacc 530
>gb|AV927108.1|AV927108 AV927108 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26m16 5', mRNA sequence
Length = 640
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 249 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 308
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 309 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 368
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 369 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 428
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 488
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 489 accccaccgccgacttccacacctacaagatcgtctggaacc 530
>gb|BJ463118.1|BJ463118 BJ463118 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25n11 5', mRNA sequence
Length = 613
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 224 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 283
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 284 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 343
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 344 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 403
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 404 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 463
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 464 accccaccgccgacttccacacctacaagatcgtctggaacc 505
>gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_F18 5', mRNA sequence
Length = 622
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 8 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 67
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 68 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 127
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 128 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 187
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 188 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 247
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 248 accccaccgccgacttccacacctacaagatcgtctggaacc 289
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(PM5)
Length = 1188
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 243 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 302
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 303 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 362
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 363 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 422
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 423 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 482
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 483 accccaccgccgacttccacacctacaagatcgtctggaacc 524
>gb|BF263162.2|BF263162 HV_CEa0006A01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006A01f, mRNA sequence
Length = 593
Score = 242 bits (122), Expect = 1e-062
Identities = 242/282 (85%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 243 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 302
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 303 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 362
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 363 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 422
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 423 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 482
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||| ||||| ||||||||||| ||| |||||||||
Sbjct: 483 accccaccggcgacttccacacctacaagatcgtctggaacc 524
>gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020K16f, mRNA sequence
Length = 901
Score = 242 bits (122), Expect = 1e-062
Identities = 242/282 (85%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 244 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 303
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 304 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 363
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| |||||||||||||| ||||| | || ||| |||
Sbjct: 364 gccatgacgagatcgacatctagttcatgggcaacctcagcggcgacccctacgtgatga 423
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 424 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 483
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 484 accccaccgccgacttccacacctacaagatcgtctggaacc 525
>gb|BG300161.1|BG300161 HVSMEb0010K02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010K02f, mRNA sequence
Length = 515
Score = 236 bits (119), Expect = 7e-061
Identities = 230/267 (86%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 248 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 307
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 308 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 367
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 368 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 427
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 428 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 487
Query: 509 acccctccgccgactaccacacctaca 535
||||| ||||||||| ||||||||||
Sbjct: 488 accccaccgccgactttcacacctaca 514
>gb|BF618866.2|BF618866 HVSMEc0008D05f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0008D05f, mRNA sequence
Length = 817
Score = 236 bits (119), Expect = 7e-061
Identities = 241/282 (85%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| ||||| |||||||||||| ||||||||||||
Sbjct: 243 ccggcttcagctccaaggacaagtacctctacggngagttcagcgtccagatgaagctca 302
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 303 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 362
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 363 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 422
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 423 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 482
Query: 509 acccctccgccgactaccacacctacaccatcatctggaacc 550
||||| ||| ||||| ||||||||||| ||| |||||||||
Sbjct: 483 accccaccggcgacttccacacctacaggatcgtctggaacc 524
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
Length = 1110
Score = 212 bits (107), Expect = 1e-053
Identities = 227/267 (85%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
|||||||||| ||||||| ||||||| | |||||||||| ||| ||||||||||
Sbjct: 219 ccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatgaagctcg 278
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| || |||||||||||||||||| | | ||||||||| | |||||||| ||| |
Sbjct: 279 tcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgagagcgcca 338
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| ||||||||||||||| ||||||||||||||||||||||| | || ||| |||
Sbjct: 339 cccacgacgagatcgacatcgagttcatgggcaactcgagcggcgacccctacgtgatga 398
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 399 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 458
Query: 509 acccctccgccgactaccacacctaca 535
||||||||||||||| |||||||||||
Sbjct: 459 acccctccgccgacttccacacctaca 485
>gb|AV925293.1|AV925293 AV925293 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22j07 5', mRNA sequence
Length = 488
Score = 206 bits (104), Expect = 6e-052
Identities = 206/240 (85%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 249 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 308
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 309 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 368
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 369 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 428
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 488
>gb|BQ460993.1|BQ460993 HE01I24r HE Hordeum vulgare subsp. vulgare cDNA clone HE01I24
5-PRIME, mRNA sequence
Length = 465
Score = 206 bits (104), Expect = 6e-052
Identities = 206/240 (85%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 226 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 285
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 286 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 345
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | |||||||||||||| ||||||||||||||| ||||| | || ||| |||
Sbjct: 346 gccatgacgagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatga 405
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 406 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 465
>gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001K09f, mRNA sequence
Length = 606
Score = 202 bits (102), Expect = 1e-050
Identities = 147/162 (90%)
Strand = Plus / Plus
Query: 388 gggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctg 447
|||| ||||||||||||||||||||||||||||||| | || |||||||||| |||
Sbjct: 56 gggcacgacgagatcgacatggagttcatgggcaacagcacgggccagccggtggcgctc 115
Query: 448 aacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttc 507
||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct: 116 aacaccaacgtgtgggccaacggcgacggcaagaaggagcagcagttctacctctggttc 175
Query: 508 gacccctccgccgactaccacacctacaccatcatctggaac 549
||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 176 gacccggccgccggctaccacacctacaccatcatctggaac 217
>gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0003D18f, mRNA sequence
Length = 870
Score = 196 bits (99), Expect = 6e-049
Identities = 225/267 (84%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
|||||||||| ||||||| ||||||| | |||||||||| ||| ||||||||||
Sbjct: 241 ccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatgaagctcg 300
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| || |||||||||||||||||| | | ||||||||| | |||||||| ||| |
Sbjct: 301 tcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgagagcgcca 360
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| ||||||||||||||| ||||||||||| ||||||||||| | || ||| |||
Sbjct: 361 cccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctacgtgatga 420
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 421 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 480
Query: 509 acccctccgccgactaccacacctaca 535
||||||||||||||| |||||||||||
Sbjct: 481 acccctccgccgacttccacacctaca 507
>gb|BF629934.2|BF629934 HVSMEb0007F23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007F23f, mRNA sequence
Length = 499
Score = 196 bits (99), Expect = 6e-049
Identities = 225/267 (84%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
|||||||||| ||||||| ||||||| | |||||||||| ||| ||||||||||
Sbjct: 221 ccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatgaagctcg 280
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| || |||||||||||||||||| | | ||||||||| | |||||||| ||| |
Sbjct: 281 tcgacggcaactccgccggcaccgtcaccttcttctacctgacctccggcgagagcgcca 340
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| ||||||||||||||| ||||||||||| ||||||||||| | || ||| |||
Sbjct: 341 cccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctacgtgatga 400
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 401 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 460
Query: 509 acccctccgccgactaccacacctaca 535
||||||||||||||| |||||||||||
Sbjct: 461 acccctccgccgacttccacacctaca 487
>gb|AV916008.1|AV916008 AV916008 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1b10 5', mRNA sequence
Length = 533
Score = 196 bits (99), Expect = 6e-049
Identities = 225/267 (84%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
|||||||||| ||||||| ||||||| | |||||||||| ||| ||||||||||
Sbjct: 209 ccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatgaagctcg 268
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| || |||||||||||||||||| | | ||||||||| | |||||||| ||| |
Sbjct: 269 tcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgagagcgcca 328
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| ||||||||||||||| ||||||||||| ||||||||||| | || ||| |||
Sbjct: 329 cccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctacgtgatga 388
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 389 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 448
Query: 509 acccctccgccgactaccacacctaca 535
||||||||||||||| |||||||||||
Sbjct: 449 acccctccgccgacttccacacctaca 475
>gb|CA008408.1|CA008408 HU10N24r HU Hordeum vulgare subsp. vulgare cDNA clone HU10N24
5-PRIME, mRNA sequence
Length = 607
Score = 196 bits (99), Expect = 6e-049
Identities = 225/267 (84%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
|||||||||| ||||||| ||||||| | |||||||||| ||| ||||||||||
Sbjct: 246 ccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatgaagctcg 305
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| || |||||||||||||||||| | | ||||||||| | |||||||| ||| |
Sbjct: 306 tcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgagagcgcca 365
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| ||||||||||||||| ||||||||||| ||||||||||| | || ||| |||
Sbjct: 366 cccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctacgtgatga 425
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 426 acaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggttcg 485
Query: 509 acccctccgccgactaccacacctaca 535
||||||||||||||| |||||||||||
Sbjct: 486 acccctccgccgacttccacacctaca 512
>gb|BI958669.1|BI958669 HVSMEn0016C05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016C05f, mRNA sequence
Length = 674
Score = 180 bits (91), Expect = 4e-044
Identities = 172/199 (86%)
Strand = Plus / Plus
Query: 337 aactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgac 396
|||||||||||||||||| | | ||||||||| | |||||||| ||| | | ||||
Sbjct: 279 aactccgccggcaccgtcacctccttctacctgacctccggcgagagcgccacccacgac 338
Query: 397 gagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctgaacaccaac 456
||||||||||| ||||||||||| ||||||||||| | || ||| |||||||||||
Sbjct: 339 gagatcgacatcgagttcatgggaaactcgagcggcgacccctacgtgatgaacaccaac 398
Query: 457 gtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcgacccctcc 516
|| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 399 gtctgggccagcggcgactgcaagaaggagcaccagttctacctctggttcgacccctcc 458
Query: 517 gccgactaccacacctaca 535
||||||| |||||||||||
Sbjct: 459 gccgacttccacacctaca 477
>gb|BI959766.1|BI959766 HVSMEn0021F17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021F17f, mRNA sequence
Length = 634
Score = 170 bits (86), Expect = 3e-041
Identities = 223/268 (83%), Gaps = 1/268 (0%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 242 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 301
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 302 tcggcggcaactccgccggcaccgggacctccttctacctgacgtctggggagggcgacg 361
Query: 389 ggcgcgacga-gatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctg 447
| | ||||| |||| |||| ||||||||||||||| ||||| | || ||| ||
Sbjct: 362 gccatgacgaagatcnacatcgagttcatgggcaacctcagcggcgacccctacgtgatg 421
Query: 448 aacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttc 507
||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct: 422 aacaccaacgtctgggccagcggcgacggcaagaaagagcaccanttctacctctggttc 481
Query: 508 gacccctccgccgactaccacacctaca 535
|||||| ||| | ||| ||||||||||
Sbjct: 482 gaccccaccggccacttgcacacctaca 509
>gb|BI958667.1|BI958667 HVSMEn0016C03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016C03f, mRNA sequence
Length = 689
Score = 157 bits (79), Expect = 5e-037
Identities = 220/267 (82%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
|||||||||| ||||||| ||||||| | |||||||||| ||| ||||||||||
Sbjct: 205 ccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatgaagctcg 264
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| || |||||||||||||||||| | | ||||||||| | |||||||| ||| |
Sbjct: 265 tcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgagagcgcca 324
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| ||||||||||||||| ||||||||||| ||||||||||| | || ||| |||
Sbjct: 325 cccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctacgtgatga 384
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||| |||||| ||||||||||| |||| |||||||||||| ||||||||||||
Sbjct: 385 acaccaacgtctgggcccgcggcgacggccagaatgagcaccagttctacctctggttcg 444
Query: 509 acccctccgccgactaccacacctaca 535
|||||| || ||||| |||||||||||
Sbjct: 445 accccttcggcgacttccacacctaca 471
>gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019O24f, mRNA sequence
Length = 672
Score = 155 bits (78), Expect = 2e-036
Identities = 180/214 (84%)
Strand = Plus / Plus
Query: 337 aactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgac 396
|||||||||||| |||| |||||||||||| | || || || |||||||| | |||
Sbjct: 8 aactccgccggcgccgtggggtgcttctacctgacgtctggggagggcgacggccatgac 67
Query: 397 gagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctgaacaccaac 456
||||||||||| ||||||||||||||| ||||| | || ||| |||||||||||
Sbjct: 68 gagatcgacatcgagttcatgggcaacctcagcggcgacccctacgtgatgaacaccaac 127
Query: 457 gtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcgacccctcc 516
|| |||||||||||||||||||||||||||||||||||| |||||||| | |||||| ||
Sbjct: 128 gtctgggccagcggcgacggcaagaaggagcaccagttctacctctgggtggaccccacc 187
Query: 517 gccgactaccacacctacaccatcatctggaacc 550
||||||| ||||||||||| ||| |||||||||
Sbjct: 188 gccgacttccacacctacaagatcgtctggaacc 221
>gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j18 5', mRNA sequence
Length = 447
Score = 153 bits (77), Expect = 8e-036
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 31 tgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggt 90
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 91 tcgaccccaccgccgacttccacacctacaagatcgtctggaacc 135
>gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e21 5', mRNA sequence
Length = 547
Score = 153 bits (77), Expect = 8e-036
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 63 tgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggt 122
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 123 tcgaccccaccgccgacttccacacctacaagatcgtctggaacc 167
>gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16e21 5', mRNA sequence
Length = 648
Score = 153 bits (77), Expect = 8e-036
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 53 tgaacaccaacgtctgggccagcggcgacggcaagaaggagcaccagttctacctctggt 112
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||| ||||||||| ||||||||||| ||| |||||||||
Sbjct: 113 tcgaccccaccgccgacttccacacctacaagatcgtctggaacc 157
>gb|BG309526.2|BG309526 HVSMEc0010M24f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010M24f, mRNA sequence
Length = 807
Score = 135 bits (68), Expect = 2e-030
Identities = 194/236 (82%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| ||||| |||||||||||| ||||||||||||
Sbjct: 225 ccggcttcagctccaaggacaagtacctctacggggagttcagcgtccagatgaagctca 284
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | |||||||||| ||||||||| | ||||||||||| | || || || |||||||
Sbjct: 285 tcggcgggaactccggcggcaccgtgacctgcttctacctgacgtctggggagggcgacg 344
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| | ||| |||||||||| ||| ||||||||||| |||||| | || || | |||
Sbjct: 345 gccatgactagatcgacatcgaggtcatgggcaacctgagcggcgaccccgtacggatga 404
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctgg 504
|||||||||| ||||||||||| || || | |||||||||||||| ||||||||
Sbjct: 405 acaccaacgtctgggccagcggggaggggataaaggagcaccagttttacctctgg 460
>gb|BF259456.3|BF259456 HVSMEf0019C15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019C15f, mRNA sequence
Length = 927
Score = 131 bits (66), Expect = 3e-029
Identities = 194/234 (82%), Gaps = 2/234 (0%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttca-gcgtcgagatgaagctc 327
||||||||| ||||||||| ||||||| ||||||||||||| ||||| |||||||||||
Sbjct: 243 ccggcttcagctccaaggacaagtacctctacggcgagttcaagcgtccagatgaagctc 302
Query: 328 atccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgac 387
||| | || |||||||||||||||||| | | ||||||||| | || || || ||||||
Sbjct: 303 atcggcggcaactccgccggcaccgtcaccttcttctacctgacgtctggggagggcgac 362
Query: 388 gggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctg 447
|| | || |||||||||| ||||| |||||||| ||||| | || | ||| ||
Sbjct: 363 ggccatgaacagatcgacatcgagttactgggcaaccttagcggctaccccttcgtgatg 422
Query: 448 aacaccaacgtgtgggccagcggcgac-ggcaagaaggagcaccagttcgacct 500
||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct: 423 aacaccaacgtctgggccagcggcgactggcaagaaggagcaccatttctacct 476
>gb|BI956298.1|BI956298 HVSMEn0002B22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002B22f, mRNA sequence
Length = 842
Score = 129 bits (65), Expect = 1e-028
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct: 422 tgaacaccaacgtctgggccaccggcgacggcaagaaggagcgccagttctacctctggt 481
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||| ||| ||||| ||||||||||| ||| |||||||||
Sbjct: 482 tcgaccccaccggcgacttccacacctacaagatcgtctggaacc 526
>gb|BF627429.2|BF627429 HVSMEb0004N10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004N10f, mRNA sequence
Length = 793
Score = 127 bits (64), Expect = 5e-028
Identities = 130/152 (85%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 243 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 302
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || ||||||||||||||||| | ||||||||||| | || || || |||||||
Sbjct: 303 tcggcggcgactccgccggcaccgtcacctgcttctacctgacgtctggggagggcgacg 362
Query: 389 ggcgcgacgagatcgacatggagttcatgggc 420
| || |||||||||||| | |||| |||||||
Sbjct: 363 gccgtgacgagatcgacgtcgagtgcatgggc 394
>gb|BF256171.2|BF256171 HVSMEf0008P16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008P16f, mRNA sequence
Length = 446
Score = 123 bits (62), Expect = 7e-027
Identities = 167/202 (82%)
Strand = Plus / Plus
Query: 334 gggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacgggcgc 393
||||||||||||||||||||| | | ||||||||| | |||||||| ||| | | |
Sbjct: 146 gggaactccgccggcaccgtcacctacttctacctgacctccggcgagagcgccacccac 205
Query: 394 gacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctgaacacc 453
|||||||||||||| ||||||||||| ||||| ||||| | || ||| ||||||||
Sbjct: 206 gacgagatcgacatcgagttcatgggaaactctagcggcgacccctacgtgatgaacacc 265
Query: 454 aacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcgacccc 513
| ||| ||||||||||| |||||||||||||||||||| ||| |||| |||| ||||||
Sbjct: 266 atcgtatgggccagcggtgacggcaagaaggagcaccatttctacctatggtgagacccc 325
Query: 514 tccgccgactaccacacctaca 535
|||| ||||| ||||||||||
Sbjct: 326 tccgacgacttgcacacctaca 347
>gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1b10 3', mRNA sequence
Length = 664
Score = 121 bits (61), Expect = 3e-026
Identities = 67/69 (97%)
Strand = Plus / Minus
Query: 467 gcggcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactacc 526
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 664 gcggcgacggcaagaaggagcaccagttctacctctggttcgacccctccgccgacttcc 605
Query: 527 acacctaca 535
|||||||||
Sbjct: 604 acacctaca 596
>gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 5', mRNA sequence
Length = 627
Score = 119 bits (60), Expect = 1e-025
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 467 gcggcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactacc 526
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct: 2 gcggcgacggcaagaaggagcaccagttctacctctggttcgaccccaccgccgacttcc 61
Query: 527 acacctacaccatcatctggaacc 550
||||||||| ||| |||||||||
Sbjct: 62 acacctacaagatcgtctggaacc 85
>gb|BI958113.1|BI958113 HVSMEn0013H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013H08f, mRNA sequence
Length = 883
Score = 115 bits (58), Expect = 2e-024
Identities = 164/197 (83%), Gaps = 2/197 (1%)
Strand = Plus / Plus
Query: 292 tacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcacc 351
||||| |||||| ||||||||||| ||||||||||| ||| || |||||||||||||||
Sbjct: 287 tacctctacggccagttcagcgtccagatgaagctcgtccccggcaactccgccggcacc 346
Query: 352 gtctcgtgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggag 411
| | | ||||||||||| || || ||| ||| |||| |||||||||||||||| ||
Sbjct: 347 ggcgcctgcttctacctgtcgtcgggcaacgagccggggcacgacgagatcgacatgnag 406
Query: 412 ttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggc 471
|||||||||||| | || |||||||||| ||| || |||||||||||| || ||||
Sbjct: 407 ttcatgggcaacagcacgggccagccggtggcgct-aagcccaacgtgtggg-caacggc 464
Query: 472 gacggcaagaaggagca 488
|||||||||||||||||
Sbjct: 465 gacggcaagaaggagca 481
>gb|BI956580.1|BI956580 HVSMEn0004E02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004E02f, mRNA sequence
Length = 853
Score = 111 bits (56), Expect = 3e-023
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 225 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 284
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| | || |||||||||||||||||| | | ||||||||| | || || || |||||||
Sbjct: 285 tcggcggcaactccgccggcaccgtcacctccttctacctgacgtctggggagggcgacg 344
Query: 389 ggcgcgacgagatcga 404
| | |||||||||||
Sbjct: 345 gccatgacgagatcga 360
>gb|BU971950.1|BU971950 HB20C15r BC Hordeum vulgare subsp. vulgare cDNA clone HB20C15
5-PRIME, mRNA sequence
Length = 446
Score = 109 bits (55), Expect = 1e-022
Identities = 175/215 (81%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
|||||||||| ||||||| ||||||| | |||||||||| ||| ||||||||||
Sbjct: 232 ccggcttcaagtccaaggccaagtacctcttcggcgagttccaggtccggatgaagctcg 291
Query: 329 tccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcgacg 388
|| || |||||||||||||||||| | | ||||||||| | |||||||| ||| |
Sbjct: 292 tcgacggcaactccgccggcaccgtcacctccttctacctgacctccggcgagagcgcca 351
Query: 389 ggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctga 448
| ||||||||||||||| ||||||||||| ||||||||||| | || ||| |||
Sbjct: 352 cccacgacgagatcgacatcgagttcatgggaaactcgagcggcgacccctacgtgatga 411
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaag 483
|||||||||| ||||||||||||||||||||||||
Sbjct: 412 acaccaacgtctgggccagcggcgacggcaagaag 446
>gb|BF618271.2|BF618271 HVSMEc0005D16f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0005D16f, mRNA sequence
Length = 590
Score = 107 bits (54), Expect = 4e-022
Identities = 120/142 (84%)
Strand = Plus / Plus
Query: 393 cgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctgaacac 452
||||||||||||||| |||||| |||| ||||||||||| |||| ||| |||||||
Sbjct: 372 cgacgagatcgacatcgagttcgtgggaaactcgagcggcgagccctacgtgatgaacac 431
Query: 453 caacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcgaccc 512
|||||| ||||||||||| ||| ||||||| || |||||| | |||||||| |||||||
Sbjct: 432 caacgtctgggccagcggtgaccgcaagaaagatcaccagatatacctctgggtcgaccc 491
Query: 513 ctccgccgactaccacacctac 534
|| || ||||| ||||||||||
Sbjct: 492 ctgcgtcgacttccacacctac 513
>gb|BI956297.1|BI956297 HVSMEn0002B20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002B20f, mRNA sequence
Length = 833
Score = 107 bits (54), Expect = 4e-022
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 269 ccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctca 328
||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 243 ccggcttcagctccaaggacaagtacctctacggcgagttcagcgtccagatgaagctca 302
Query: 329 tccgggggaactccgccggcaccgtc 354
|| | || ||||||||||||||||||
Sbjct: 303 tcggcggcaactccgccggcaccgtc 328
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,131
Number of Sequences: 312970
Number of extensions: 100131
Number of successful extensions: 33232
Number of sequences better than 0.5: 157
Number of HSP's better than 0.5 without gapping: 156
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32749
Number of HSP's gapped (non-prelim): 457
length of query: 610
length of database: 175,134,539
effective HSP length: 19
effective length of query: 591
effective length of database: 169,188,109
effective search space: 99990172419
effective search space used: 99990172419
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)