BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.2
(494 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow st... 165 2e-039
gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow st... 165 2e-039
gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow st... 149 1e-034
gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow st... 149 1e-034
gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow st... 149 1e-034
gb|AL505296.1|AL505296 AL505296 Hordeum vulgare Barke roots... 48 3e-004
gb|AL505692.1|AL505692 AL505692 Hordeum vulgare Barke roots... 48 3e-004
gb|BG300145.1|BG300145 HVSMEb0010G24f Hordeum vulgare seedl... 48 3e-004
gb|BI950605.1|BI950605 HVSMEl0021J24f Hordeum vulgare spike... 48 3e-004
gb|BE216049.2|BE216049 HV_CEb0009E03f Hordeum vulgare seedl... 48 3e-004
gb|BF616370.3|BF616370 HVSMEc0007A02f Hordeum vulgare seedl... 48 3e-004
gb|AV926936.1|AV926936 AV926936 K. Sato unpublished cDNA li... 48 3e-004
gb|BJ463541.1|BJ463541 BJ463541 K. Sato unpublished cDNA li... 48 3e-004
gb|BJ466489.1|BJ466489 BJ466489 K. Sato unpublished cDNA li... 48 3e-004
gb|BJ476245.1|BJ476245 BJ476245 K. Sato unpublished cDNA li... 48 3e-004
gb|BJ476665.1|BJ476665 BJ476665 K. Sato unpublished cDNA li... 48 3e-004
gb|BQ460921.1|BQ460921 HE01M06r HE Hordeum vulgare subsp. v... 48 3e-004
gb|BQ469637.1|BQ469637 HZ01G16r HZ Hordeum vulgare subsp. v... 48 3e-004
gb|BM441947.2|BM441947 EBan01_SQ001_A02_R anther, yellow st... 48 3e-004
gb|BM377129.2|BM377129 EBem05_SQ004_D11_R embryo, 14 DPA, n... 48 3e-004
gb|BM369644.2|BM369644 EBem07_SQ004_D10_R embryo, 28 DPA, n... 48 3e-004
gb|BM372397.2|BM372397 EBro03_SQ004_N12_R root, 3 week, wat... 48 3e-004
gb|BQ764551.1|BQ764551 EBca01_SQ004_O06_R carpel, pre-anthe... 48 3e-004
gb|BQ765063.1|BQ765063 EBca01_SQ005_N18_R carpel, pre-anthe... 48 3e-004
gb|BU977218.1|BU977218 HA11A17r HA Hordeum vulgare subsp. v... 48 3e-004
gb|BU982393.1|BU982393 HA26G16r HA Hordeum vulgare subsp. v... 48 3e-004
gb|BU996702.1|BU996702 HM14H14r HM Hordeum vulgare subsp. v... 48 3e-004
gb|BU999728.1|BU999728 HI15I03r HI Hordeum vulgare subsp. v... 48 3e-004
gb|CA017403.1|CA017403 HV05B16r HV Hordeum vulgare subsp. v... 48 3e-004
gb|CA025095.1|CA025095 HZ51D05r HZ Hordeum vulgare subsp. v... 48 3e-004
gb|CA028260.1|CA028260 HZ61H10r HZ Hordeum vulgare subsp. v... 48 3e-004
gb|CA032315.1|CA032315 HX12K14r HX Hordeum vulgare subsp. v... 48 3e-004
gb|CK123865.1|CK123865 BES1824105n21 BES1824 Hordeum vulgar... 48 3e-004
gb|CK125568.1|CK125568 BES1824109b06 BES1824 Hordeum vulgar... 48 3e-004
gb|BM442216.2|BM442216 EBan01_SQ002_I23_R anther, yellow st... 46 0.001
gb|BI776278.2|BI776278 EBem04_SQ001_F10_R embryo, 12 DPA, n... 40 0.067
gb|BM374546.2|BM374546 EBpi03_SQ003_O19_R pistil, 4 DPA, no... 40 0.067
>gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E04 5', mRNA sequence
Length = 507
Score = 165 bits (83), Expect = 2e-039
Identities = 186/231 (80%)
Strand = Plus / Plus
Query: 70 catgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttcat 129
|||||||||||||||| |||||||||||||| | ||||| ||||| |||||||||
Sbjct: 69 catgtctttcaccggcacgcaggacaagtgctcggcgtgcgaaaagacggtccacttcat 128
Query: 130 cgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngccactg 189
|||||||||||| || ||||||||| ||||| ||| |||| | |||||||
Sbjct: 129 cgacctcctcacggccgacggcgtcatctaccacaagacctgcttcaaatgcagccactg 188
Query: 190 caaagggnnncnctcgatgtgcagctactcctccatggacgnnnnnctgtactgcaagac 249
||||||| | ||||||||||||||| || |||||||||| || |||||||||||
Sbjct: 189 caaagggatcctctcgatgtgcagctattcttccatggacggtgtcctctactgcaagac 248
Query: 250 ccacttcgagcagctcttcaagnngaccgggagcttctccaagaacttcac 300
||||||||||||||||||||| ||| ||||||||||| ||||| |||||
Sbjct: 249 gcacttcgagcagctcttcaaggagacagggagcttctcaaagaagttcac 299
Score = 50.1 bits (25), Expect = 7e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 330 aactgacaagggccccaagcaagct 354
|||||||||||||||||||||||||
Sbjct: 329 aactgacaagggccccaagcaagct 353
>gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D21 5', mRNA sequence
Length = 633
Score = 165 bits (83), Expect = 2e-039
Identities = 186/231 (80%)
Strand = Plus / Plus
Query: 70 catgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttcat 129
|||||||||||||||| |||||||||||||| | ||||| ||||| |||||||||
Sbjct: 67 catgtctttcaccggcacgcaggacaagtgctcggcgtgcgaaaagacggtccacttcat 126
Query: 130 cgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngccactg 189
|||||||||||| || ||||||||| ||||| ||| |||| | |||||||
Sbjct: 127 cgacctcctcacggccgacggcgtcatctaccacaagacctgcttcaaatgcagccactg 186
Query: 190 caaagggnnncnctcgatgtgcagctactcctccatggacgnnnnnctgtactgcaagac 249
||||||| | ||||||||||||||| || |||||||||| || |||||||||||
Sbjct: 187 caaagggatcctctcgatgtgcagctattcttccatggacggtgtcctctactgcaagac 246
Query: 250 ccacttcgagcagctcttcaagnngaccgggagcttctccaagaacttcac 300
||||||||||||||||||||| ||| ||||||||||| ||||| |||||
Sbjct: 247 gcacttcgagcagctcttcaaggagacagggagcttctcaaagaagttcac 297
Score = 50.1 bits (25), Expect = 7e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 330 aactgacaagggccccaagcaagct 354
|||||||||||||||||||||||||
Sbjct: 327 aactgacaagggccccaagcaagct 351
>gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_K04 5', mRNA sequence
Length = 647
Score = 149 bits (75), Expect = 1e-034
Identities = 190/239 (79%)
Strand = Plus / Plus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct: 107 caccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccactt 166
Query: 127 catcgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngcca 186
||||||||||||||| || | |||||| ||||||||| |||| | ||||
Sbjct: 167 catcgacctcctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagcca 226
Query: 187 ctgcaaagggnnncnctcgatgtgcagctactcctccatggacgnnnnnctgtactgcaa 246
|||||| ||| | ||||||||||| |||||| |||||||| | || ||||||||
Sbjct: 227 ctgcaaggggaccctctcgatgtgcaactactcttccatggatggtgtcctctactgcaa 286
Query: 247 gacccacttcgagcagctcttcaagnngaccgggagcttctccaagaacttcacgccag 305
|||||| ||||| || ||||||||| ||| ||||||||||| ||||| || |||||||
Sbjct: 287 gacccatttcgaacaactcttcaaggagacggggagcttctcaaagaaatttacgccag 345
>gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_D10 5', mRNA sequence
Length = 634
Score = 149 bits (75), Expect = 1e-034
Identities = 190/239 (79%)
Strand = Plus / Plus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct: 113 caccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccactt 172
Query: 127 catcgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngcca 186
||||||||||||||| || | |||||| ||||||||| |||| | ||||
Sbjct: 173 catcgacctcctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagcca 232
Query: 187 ctgcaaagggnnncnctcgatgtgcagctactcctccatggacgnnnnnctgtactgcaa 246
|||||| ||| | ||||||||||| |||||| |||||||| | || ||||||||
Sbjct: 233 ctgcaaggggaccctctcgatgtgcaactactcttccatggatggtgtcctctactgcaa 292
Query: 247 gacccacttcgagcagctcttcaagnngaccgggagcttctccaagaacttcacgccag 305
|||||| ||||| || ||||||||| ||| ||||||||||| ||||| || |||||||
Sbjct: 293 gacccatttcgaacaactcttcaaggagacggggagcttctcaaagaaatttacgccag 351
>gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_I18 5', mRNA sequence
Length = 598
Score = 149 bits (75), Expect = 1e-034
Identities = 190/239 (79%)
Strand = Plus / Plus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct: 116 caccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccactt 175
Query: 127 catcgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngcca 186
||||||||||||||| || | |||||| ||||||||| |||| | ||||
Sbjct: 176 catcgacctcctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagcca 235
Query: 187 ctgcaaagggnnncnctcgatgtgcagctactcctccatggacgnnnnnctgtactgcaa 246
|||||| ||| | ||||||||||| |||||| |||||||| | || ||||||||
Sbjct: 236 ctgcaaggggaccctctcgatgtgcaactactcttccatggatggtgtcctctactgcaa 295
Query: 247 gacccacttcgagcagctcttcaagnngaccgggagcttctccaagaacttcacgccag 305
|||||| ||||| || ||||||||| ||| ||||||||||| ||||| || |||||||
Sbjct: 296 gacccatttcgaacaactcttcaaggagacggggagcttctcaaagaaatttacgccag 354
>gb|AL505296.1|AL505296 AL505296 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08A11V 5', mRNA sequence
Length = 689
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 197 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 242
>gb|AL505692.1|AL505692 AL505692 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09D21V 5', mRNA sequence
Length = 470
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 226 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 271
>gb|BG300145.1|BG300145 HVSMEb0010G24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010G24f, mRNA sequence
Length = 517
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 186 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 231
>gb|BI950605.1|BI950605 HVSMEl0021J24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021J24f, mRNA sequence
Length = 865
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 268 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 313
>gb|BE216049.2|BE216049 HV_CEb0009E03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009E03f, mRNA sequence
Length = 652
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 76 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 121
>gb|BF616370.3|BF616370 HVSMEc0007A02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0007A02f, mRNA sequence
Length = 600
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 441 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 486
>gb|AV926936.1|AV926936 AV926936 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26c07 5', mRNA sequence
Length = 733
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 380 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 425
>gb|BJ463541.1|BJ463541 BJ463541 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g17 5', mRNA sequence
Length = 604
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 210 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 255
>gb|BJ466489.1|BJ466489 BJ466489 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g17 3', mRNA sequence
Length = 619
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 606 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 561
>gb|BJ476245.1|BJ476245 BJ476245 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal33a06 3', mRNA sequence
Length = 688
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 621 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 576
>gb|BJ476665.1|BJ476665 BJ476665 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal36f06 3', mRNA sequence
Length = 620
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 605 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 560
>gb|BQ460921.1|BQ460921 HE01M06r HE Hordeum vulgare subsp. vulgare cDNA clone HE01M06
5-PRIME, mRNA sequence
Length = 510
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 373 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 418
>gb|BQ469637.1|BQ469637 HZ01G16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01G16
5-PRIME, mRNA sequence
Length = 509
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 256 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 301
>gb|BM441947.2|BM441947 EBan01_SQ001_A02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_A02 5', mRNA sequence
Length = 483
Score = 48.1 bits (24), Expect = 3e-004
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 88 gcaggacaagtgcacnnnntgcgacaagaccnnccacttcatcgacctcctcac 141
||||||||||||| | ||||| ||||| |||||||||||||||||||||
Sbjct: 1 gcaggacaagtgctcggcgtgcgaaaagacggtccacttcatcgacctcctcac 54
>gb|BM377129.2|BM377129 EBem05_SQ004_D11_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_D11 5', mRNA sequence
Length = 625
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 339 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 384
>gb|BM369644.2|BM369644 EBem07_SQ004_D10_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_D10 5', mRNA sequence
Length = 512
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 181 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 226
>gb|BM372397.2|BM372397 EBro03_SQ004_N12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_N12 5', mRNA sequence
Length = 581
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 107 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 152
>gb|BQ764551.1|BQ764551 EBca01_SQ004_O06_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_O06 5', mRNA sequence
Length = 646
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 14 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 59
>gb|BQ765063.1|BQ765063 EBca01_SQ005_N18_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_N18 5', mRNA sequence
Length = 716
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 238 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 283
>gb|BU977218.1|BU977218 HA11A17r HA Hordeum vulgare subsp. vulgare cDNA clone HA11A17
5-PRIME, mRNA sequence
Length = 558
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 349 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 394
>gb|BU982393.1|BU982393 HA26G16r HA Hordeum vulgare subsp. vulgare cDNA clone HA26G16
5-PRIME, mRNA sequence
Length = 417
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 236 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 281
>gb|BU996702.1|BU996702 HM14H14r HM Hordeum vulgare subsp. vulgare cDNA clone HM14H14
5-PRIME, mRNA sequence
Length = 558
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 309 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 354
>gb|BU999728.1|BU999728 HI15I03r HI Hordeum vulgare subsp. vulgare cDNA clone HI15I03
5-PRIME, mRNA sequence
Length = 543
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 308 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 353
>gb|CA017403.1|CA017403 HV05B16r HV Hordeum vulgare subsp. vulgare cDNA clone HV05B16
5-PRIME, mRNA sequence
Length = 500
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 326 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 371
>gb|CA025095.1|CA025095 HZ51D05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51D05
5-PRIME, mRNA sequence
Length = 587
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 217 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 262
>gb|CA028260.1|CA028260 HZ61H10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61H10
5-PRIME, mRNA sequence
Length = 556
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 347 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 392
>gb|CA032315.1|CA032315 HX12K14r HX Hordeum vulgare subsp. vulgare cDNA clone HX12K14
5-PRIME, mRNA sequence
Length = 666
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 370 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 415
>gb|CK123865.1|CK123865 BES1824105n21 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N215 5-PRIME, mRNA sequence
Length = 823
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 238 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 283
>gb|CK125568.1|CK125568 BES1824109b06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B069 5-PRIME, mRNA sequence
Length = 782
Score = 48.1 bits (24), Expect = 3e-004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 246 tactgcaagccccatttcgcgcagctgttcaaggagaccgggagct 291
>gb|BM442216.2|BM442216 EBan01_SQ002_I23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_I23 5', mRNA sequence
Length = 284
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 206 atgtgcagctactcctccatgga 228
|||||||||||||||||||||||
Sbjct: 184 atgtgcagctactcctccatgga 206
>gb|BI776278.2|BI776278 EBem04_SQ001_F10_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ001_F10 5', mRNA sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.067
Identities = 39/46 (84%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||| ||| |||| |||| |||||| |||||| |||||||||||
Sbjct: 30 tactggaagccccatttcgcgcagctgttcaaggagaccgggagct 75
>gb|BM374546.2|BM374546 EBpi03_SQ003_O19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_O19 5', mRNA sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.067
Identities = 39/46 (84%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| ||| |||||| |||||| |||||||||||
Sbjct: 256 tactgcaagccccatttcccgcagctgttcaaggagaccgggagct 301
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,799
Number of Sequences: 312970
Number of extensions: 22799
Number of successful extensions: 5668
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5563
Number of HSP's gapped (non-prelim): 102
length of query: 494
length of database: 175,134,539
effective HSP length: 18
effective length of query: 476
effective length of database: 169,501,079
effective search space: 80682513604
effective search space used: 80682513604
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)