BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.1
(393 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow st... 82 2e-014
gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow st... 82 2e-014
gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow st... 64 4e-009
gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow st... 64 4e-009
gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow st... 64 4e-009
gb|BM441947.2|BM441947 EBan01_SQ001_A02_R anther, yellow st... 40 0.052
>gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E04 5', mRNA sequence
Length = 507
Score = 81.8 bits (41), Expect = 2e-014
Identities = 94/117 (80%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 183 ccactgcaaagggatcctctcgatgtgcagctattcttccatggacggtgtcctctactg 242
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcac 298
|||||| |||||| ||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 243 caagacgcacttcgagcagctcttcaaggagacagggagcttctcaaagaagttcac 299
Score = 50.1 bits (25), Expect = 5e-005
Identities = 57/72 (79%)
Strand = Plus / Plus
Query: 68 catgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttcat 127
|||||||||||||||| ||| | |||||||| | ||||| ||| ||||||||
Sbjct: 69 catgtctttcaccggcacgcaggacaagtgctcggcgtgcgaaaagacggtccacttcat 128
Query: 128 cgacctcctcac 139
||||||||||||
Sbjct: 129 cgacctcctcac 140
>gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D21 5', mRNA sequence
Length = 633
Score = 81.8 bits (41), Expect = 2e-014
Identities = 94/117 (80%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 181 ccactgcaaagggatcctctcgatgtgcagctattcttccatggacggtgtcctctactg 240
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcac 298
|||||| |||||| ||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 241 caagacgcacttcgagcagctcttcaaggagacagggagcttctcaaagaagttcac 297
Score = 50.1 bits (25), Expect = 5e-005
Identities = 57/72 (79%)
Strand = Plus / Plus
Query: 68 catgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttcat 127
|||||||||||||||| ||| | |||||||| | ||||| ||| ||||||||
Sbjct: 67 catgtctttcaccggcacgcaggacaagtgctcggcgtgcgaaaagacggtccacttcat 126
Query: 128 cgacctcctcac 139
||||||||||||
Sbjct: 127 cgacctcctcac 138
>gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_K04 5', mRNA sequence
Length = 647
Score = 63.9 bits (32), Expect = 4e-009
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | ||||||||| ||||||||| |||||
Sbjct: 107 caccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccactt 166
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 167 catcgacctcctcac 181
Score = 52.0 bits (26), Expect = 1e-005
Identities = 94/122 (77%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||| ||| ||||||||| | |||||| |||||||| | || |||||
Sbjct: 224 ccactgcaaggggaccctctcgatgtgcaactactcttccatggatggtgtcctctactg 283
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
||||||||| ||| || ||||||||| || ||||||||||| ||||| || |||||
Sbjct: 284 caagacccatttcgaacaactcttcaaggagacggggagcttctcaaagaaatttacgcc 343
Query: 302 ag 303
||
Sbjct: 344 ag 345
>gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_D10 5', mRNA sequence
Length = 634
Score = 63.9 bits (32), Expect = 4e-009
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | ||||||||| ||||||||| |||||
Sbjct: 113 caccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccactt 172
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 173 catcgacctcctcac 187
Score = 52.0 bits (26), Expect = 1e-005
Identities = 94/122 (77%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||| ||| ||||||||| | |||||| |||||||| | || |||||
Sbjct: 230 ccactgcaaggggaccctctcgatgtgcaactactcttccatggatggtgtcctctactg 289
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
||||||||| ||| || ||||||||| || ||||||||||| ||||| || |||||
Sbjct: 290 caagacccatttcgaacaactcttcaaggagacggggagcttctcaaagaaatttacgcc 349
Query: 302 ag 303
||
Sbjct: 350 ag 351
>gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_I18 5', mRNA sequence
Length = 598
Score = 63.9 bits (32), Expect = 4e-009
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | ||||||||| ||||||||| |||||
Sbjct: 116 caccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccactt 175
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 176 catcgacctcctcac 190
Score = 52.0 bits (26), Expect = 1e-005
Identities = 94/122 (77%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||| ||| ||||||||| | |||||| |||||||| | || |||||
Sbjct: 233 ccactgcaaggggaccctctcgatgtgcaactactcttccatggatggtgtcctctactg 292
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
||||||||| ||| || ||||||||| || ||||||||||| ||||| || |||||
Sbjct: 293 caagacccatttcgaacaactcttcaaggagacggggagcttctcaaagaaatttacgcc 352
Query: 302 ag 303
||
Sbjct: 353 ag 354
>gb|BM441947.2|BM441947 EBan01_SQ001_A02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_A02 5', mRNA sequence
Length = 483
Score = 40.1 bits (20), Expect = 0.052
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 120 cacttcatcgacctcctcac 139
||||||||||||||||||||
Sbjct: 35 cacttcatcgacctcctcac 54
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,339
Number of Sequences: 312970
Number of extensions: 14339
Number of successful extensions: 3701
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3681
Number of HSP's gapped (non-prelim): 17
length of query: 393
length of database: 175,134,539
effective HSP length: 18
effective length of query: 375
effective length of database: 169,501,079
effective search space: 63562904625
effective search space used: 63562904625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)