BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBE1h10.xg.2.1
(463 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL503000.1|AL503000 AL503000 Hordeum vulgare Barke roots... 90 8e-017
gb|BF064963.3|BF064963 HV_CEb0022D03f Hordeum vulgare seedl... 90 8e-017
gb|AV930059.1|AV930059 AV930059 K. Sato unpublished cDNA li... 90 8e-017
gb|AV930060.1|AV930060 AV930060 K. Sato unpublished cDNA li... 90 8e-017
gb|AJ434754.1|AJ434754 AJ434754 S00002 Hordeum vulgare subs... 90 8e-017
gb|BJ449827.1|BJ449827 BJ449827 K. Sato unpublished cDNA li... 90 8e-017
gb|BJ457246.1|BJ457246 BJ457246 K. Sato unpublished cDNA li... 90 8e-017
gb|BJ467660.1|BJ467660 BJ467660 K. Sato unpublished cDNA li... 90 8e-017
gb|BQ760946.1|BQ760946 EBro03_SQ003_O23_R root, 3 week, wat... 90 8e-017
gb|BF260173.2|BF260173 HVSMEf0021E20f Hordeum vulgare seedl... 84 5e-015
gb|BQ468711.1|BQ468711 HM02B12r HM Hordeum vulgare subsp. v... 58 3e-007
gb|BU973477.1|BU973477 HB25B07r BC Hordeum vulgare subsp. v... 58 3e-007
gb|BU996531.1|BU996531 HM13O15r HM Hordeum vulgare subsp. v... 58 3e-007
gb|BU996678.1|BU996678 HM14G07r HM Hordeum vulgare subsp. v... 58 3e-007
emb|AJ534447.1|HVU534447 Hordeum vulgare mRNA for apoplasti... 58 3e-007
gb|AV927370.1|AV927370 AV927370 K. Sato unpublished cDNA li... 48 3e-004
gb|BE420989.1|BE420989 HWM004.F06 ITEC HWM Barley Leaf Libr... 46 0.001
gb|AL505127.1|AL505127 AL505127 Hordeum vulgare Barke roots... 46 0.001
gb|BF256656.2|BF256656 HVSMEf0010J22f Hordeum vulgare seedl... 46 0.001
gb|BF260867.2|BF260867 HVSMEf0023C11f Hordeum vulgare seedl... 46 0.001
gb|BF267767.3|BF267767 HV_CEa0018N10f Hordeum vulgare seedl... 46 0.001
gb|AV923014.1|AV923014 AV923014 K. Sato unpublished cDNA li... 46 0.001
gb|AV928934.1|AV928934 AV928934 K. Sato unpublished cDNA li... 46 0.001
gb|BQ468675.1|BQ468675 HM01P04T HM Hordeum vulgare subsp. v... 46 0.001
gb|BQ762965.1|BQ762965 EBro02_SQ006_O16_R root, 3 week, hyd... 44 0.004
gb|BQ764136.1|BQ764136 EBro03_SQ006_J10_R root, 3 week, wat... 44 0.004
gb|AL502243.1|AL502243 AL502243 Hordeum vulgare Barke roots... 42 0.016
gb|BF255160.2|BF255160 HVSMEf0006B22f Hordeum vulgare seedl... 42 0.016
gb|BE559132.2|BE559132 HV_CEb0023A11f Hordeum vulgare seedl... 42 0.016
gb|BF260012.3|BF260012 HVSMEf0020N22f Hordeum vulgare seedl... 42 0.016
gb|BJ462585.1|BJ462585 BJ462585 K. Sato unpublished cDNA li... 42 0.016
gb|CA030695.1|CA030695 HX07N13r HX Hordeum vulgare subsp. v... 42 0.016
gb|AL503455.1|AL503455 AL503455 Hordeum vulgare Barke roots... 38 0.25
gb|BF258931.3|BF258931 HVSMEf0017B15f Hordeum vulgare seedl... 38 0.25
gb|CD662700.1|CD662700 UCRHV18_02dd02_b1 Drought-stressed D... 38 0.25
>gb|AL503000.1|AL503000 AL503000 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G14u 3', mRNA sequence
Length = 595
Score = 89.7 bits (45), Expect = 8e-017
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || ||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 449 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 390
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 389 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 330
Query: 305 aa 306
||
Sbjct: 329 aa 328
Score = 38.2 bits (19), Expect = 0.25
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 344 tgggagatgaagaaaccnctgatgaacggcgcct 377
|||||||||||||| || ||||||| |||||||
Sbjct: 290 tgggagatgaagaagcccatgatgaatggcgcct 257
>gb|BF064963.3|BF064963 HV_CEb0022D03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022D03f, mRNA sequence
Length = 690
Score = 89.7 bits (45), Expect = 8e-017
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || ||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 238 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 297
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 298 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 357
Query: 305 aa 306
||
Sbjct: 358 aa 359
Score = 42.1 bits (21), Expect = 0.016
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| ||| ||| | ||||||||| || |||||||||| ||||||
Sbjct: 91 ttcttcagagtcttcaaggatggatatggcaagcccctcgtcctcatgtgcagtgacccc 150
Query: 98 accaa 102
|||||
Sbjct: 151 accaa 155
Score = 38.2 bits (19), Expect = 0.25
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 344 tgggagatgaagaaaccnctgatgaacggcgcct 377
|||||||||||||| || ||||||| |||||||
Sbjct: 397 tgggagatgaagaagcccatgatgaatggcgcct 430
>gb|AV930059.1|AV930059 AV930059 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l01 3', mRNA sequence
Length = 502
Score = 89.7 bits (45), Expect = 8e-017
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || ||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 418 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 359
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 358 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 299
Query: 305 aa 306
||
Sbjct: 298 aa 297
>gb|AV930060.1|AV930060 AV930060 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17l02 3', mRNA sequence
Length = 425
Score = 89.7 bits (45), Expect = 8e-017
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || ||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 393 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 334
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 333 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 274
Query: 305 aa 306
||
Sbjct: 273 aa 272
Score = 38.2 bits (19), Expect = 0.25
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 344 tgggagatgaagaaaccnctgatgaacggcgcct 377
|||||||||||||| || ||||||| |||||||
Sbjct: 234 tgggagatgaagaagcccatgatgaatggcgcct 201
>gb|AJ434754.1|AJ434754 AJ434754 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078A03F1, mRNA sequence
Length = 502
Score = 89.7 bits (45), Expect = 8e-017
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || ||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 48 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 107
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 108 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 167
Query: 305 aa 306
||
Sbjct: 168 aa 169
Score = 38.2 bits (19), Expect = 0.25
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 344 tgggagatgaagaaaccnctgatgaacggcgcct 377
|||||||||||||| || ||||||| |||||||
Sbjct: 207 tgggagatgaagaagcccatgatgaatggcgcct 240
>gb|BJ449827.1|BJ449827 BJ449827 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26o06 5', mRNA sequence
Length = 600
Score = 89.7 bits (45), Expect = 8e-017
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || ||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 168 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 227
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 228 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 287
Query: 305 aa 306
||
Sbjct: 288 aa 289
Score = 44.1 bits (22), Expect = 0.004
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| ||| ||| | ||||||||| || |||||||||| ||||||
Sbjct: 21 ttcttcagagtcttcaaggatggatatggcaagcccctcgtcctcatgtgcagtgacccc 80
Query: 98 accaag 103
||||||
Sbjct: 81 accaag 86
>gb|BJ457246.1|BJ457246 BJ457246 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26o06 3', mRNA sequence
Length = 581
Score = 89.7 bits (45), Expect = 8e-017
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || ||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 415 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 356
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 355 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 296
Query: 305 aa 306
||
Sbjct: 295 aa 294
Score = 44.1 bits (22), Expect = 0.004
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| ||| ||| | ||||||||| || |||||||||| ||||||
Sbjct: 562 ttcttcagagtcttcaaggatggatatggcaagcccctcgtcctcatgtgcagtgacccc 503
Query: 98 accaag 103
||||||
Sbjct: 502 accaag 497
>gb|BJ467660.1|BJ467660 BJ467660 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29e15 3', mRNA sequence
Length = 602
Score = 89.7 bits (45), Expect = 8e-017
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || ||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 423 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 364
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 363 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 304
Query: 305 aa 306
||
Sbjct: 303 aa 302
Score = 42.1 bits (21), Expect = 0.016
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| ||| ||| | ||||||||| || |||||||||| ||||||
Sbjct: 570 ttcttcagagtcttcaaggatggatatggcaagcccctcgtcctcatgtgcagtgacccc 511
Query: 98 accaa 102
|||||
Sbjct: 510 accaa 506
Score = 38.2 bits (19), Expect = 0.25
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 344 tgggagatgaagaaaccnctgatgaacggcgcct 377
|||||||||||||| || ||||||| |||||||
Sbjct: 264 tgggagatgaagaagcccatgatgaatggcgcct 231
>gb|BQ760946.1|BQ760946 EBro03_SQ003_O23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_O23 5', mRNA sequence
Length = 484
Score = 89.7 bits (45), Expect = 8e-017
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || ||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 47 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 106
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || | |||||||||||||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 107 ctctcgagagtgtacccgtccatggcgatcgggaaagacgcgcatctctacgtgttcaac 166
Query: 305 aa 306
||
Sbjct: 167 aa 168
Score = 38.2 bits (19), Expect = 0.25
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 344 tgggagatgaagaaaccnctgatgaacggcgcct 377
|||||||||||||| || ||||||| |||||||
Sbjct: 206 tgggagatgaagaagcccatgatgaatggcgcct 239
>gb|BF260173.2|BF260173 HVSMEf0021E20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021E20f, mRNA sequence
Length = 790
Score = 83.8 bits (42), Expect = 5e-015
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||||||||||| || ||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 363 agaagcttgatcgaccgttccgtggttgagagcttcggcgccggagggaagacctgcatc 422
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || | |||||||||| ||| || ||||||| ||||| || |||||||| ||||||
Sbjct: 423 ctctcgagagtgtacccgtncatggcgatcgggaaagacgcgcatctctacgtgttcaac 482
Query: 305 aa 306
||
Sbjct: 483 aa 484
Score = 42.1 bits (21), Expect = 0.016
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| ||| ||| | ||||||||| || |||||||||| ||||||
Sbjct: 216 ttcttcagagtcttcaaggatggatatggcaagcccctcgtcctcatgtgcagtgacccc 275
Query: 98 accaa 102
|||||
Sbjct: 276 accaa 280
>gb|BQ468711.1|BQ468711 HM02B12r HM Hordeum vulgare subsp. vulgare cDNA clone HM02B12
5-PRIME, mRNA sequence
Length = 528
Score = 58.0 bits (29), Expect = 3e-007
Identities = 101/126 (80%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||| |||||||||||||| || ||||||||||| || || |||| ||| ||||||
Sbjct: 144 agaagcctgatcgatcggtccgtcgtggagagcttcggggcagggggcaggacctgcatc 203
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || ||||| |||||| | |||| | || ||| |||||| ||| |||| ||||||
Sbjct: 204 ctctcccgggtctacccgacgctcgcgctgggcaagaacgctcgccttcacgtcttcaac 263
Query: 305 aacggc 310
||||||
Sbjct: 264 aacggc 269
>gb|BU973477.1|BU973477 HB25B07r BC Hordeum vulgare subsp. vulgare cDNA clone HB25B07
5-PRIME, mRNA sequence
Length = 477
Score = 58.0 bits (29), Expect = 3e-007
Identities = 101/126 (80%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||| |||||||||||||| || ||||||||||| || || |||| ||| ||||||
Sbjct: 310 agaagcctgatcgatcggtccgtcgtggagagcttcggggcagggggcaggacctgcatc 369
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || ||||| |||||| | |||| | || ||| |||||| ||| |||| ||||||
Sbjct: 370 ctctcccgggtctacccgacgctcgcgctgggcaagaacgctcgccttcacgtcttcaac 429
Query: 305 aacggc 310
||||||
Sbjct: 430 aacggc 435
>gb|BU996531.1|BU996531 HM13O15r HM Hordeum vulgare subsp. vulgare cDNA clone HM13O15
5-PRIME, mRNA sequence
Length = 481
Score = 58.0 bits (29), Expect = 3e-007
Identities = 101/126 (80%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||| |||||||||||||| || ||||||||||| || || |||| ||| ||||||
Sbjct: 25 agaagcctgatcgatcggtccgtcgtggagagcttcggggcagggggcaggacctgcatc 84
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || ||||| |||||| | |||| | || ||| |||||| ||| |||| ||||||
Sbjct: 85 ctctcccgggtctacccgacgctcgcgctgggcaagaacgctcgccttcacgtcttcaac 144
Query: 305 aacggc 310
||||||
Sbjct: 145 aacggc 150
>gb|BU996678.1|BU996678 HM14G07r HM Hordeum vulgare subsp. vulgare cDNA clone HM14G07
5-PRIME, mRNA sequence
Length = 540
Score = 58.0 bits (29), Expect = 3e-007
Identities = 101/126 (80%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||| |||||||||||||| || ||||||||||| || || |||| ||| ||||||
Sbjct: 388 agaagcctgatcgatcggtccgtcgtggagagcttcggggcagggggcaggacctgcatc 447
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || ||||| |||||| | |||| | || ||| |||||| ||| |||| ||||||
Sbjct: 448 ctctcccgggtctacccgacgctcgcgctgggcaagaacgctcgccttcacgtcttcaac 507
Query: 305 aacggc 310
||||||
Sbjct: 508 aacggc 513
>emb|AJ534447.1|HVU534447 Hordeum vulgare mRNA for apoplastic invertase 1 (cwinw1 gene)
Length = 2095
Score = 58.0 bits (29), Expect = 3e-007
Identities = 101/126 (80%)
Strand = Plus / Plus
Query: 185 agaagcttgatcgatcggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatc 244
|||||| |||||||||||||| || ||||||||||| || || |||| ||| ||||||
Sbjct: 1638 agaagcctgatcgatcggtccgtcgtggagagcttcggggcagggggcaggacctgcatc 1697
Query: 245 ctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaac 304
|| || ||||| |||||| | |||| | || ||| |||||| ||| |||| ||||||
Sbjct: 1698 ctctcccgggtctacccgacgctcgcgctgggcaagaacgctcgccttcacgtcttcaac 1757
Query: 305 aacggc 310
||||||
Sbjct: 1758 aacggc 1763
>gb|AV927370.1|AV927370 AV927370 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m05 3', mRNA sequence
Length = 734
Score = 48.1 bits (24), Expect = 3e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 73 caaggtgctcatgtgcaccgaccc 96
||||||||||||||||||||||||
Sbjct: 713 caaggtgctcatgtgcaccgaccc 690
>gb|BE420989.1|BE420989 HWM004.F06 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.F06, mRNA sequence
Length = 1123
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 caaggtgctcatgtgcaccgacc 95
|||||||||||||||||||||||
Sbjct: 60 caaggtgctcatgtgcaccgacc 82
>gb|AL505127.1|AL505127 AL505127 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07H17V 5', mRNA sequence
Length = 650
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 caaggtgctcatgtgcaccgacc 95
|||||||||||||||||||||||
Sbjct: 592 caaggtgctcatgtgcaccgacc 614
>gb|BF256656.2|BF256656 HVSMEf0010J22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J22f, mRNA sequence
Length = 846
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 caaggtgctcatgtgcaccgacc 95
|||||||||||||||||||||||
Sbjct: 407 caaggtgctcatgtgcaccgacc 429
>gb|BF260867.2|BF260867 HVSMEf0023C11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023C11f, mRNA sequence
Length = 750
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 caaggtgctcatgtgcaccgacc 95
|||||||||||||||||||||||
Sbjct: 361 caaggtgctcatgtgcaccgacc 383
>gb|BF267767.3|BF267767 HV_CEa0018N10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018N10f, mRNA sequence
Length = 810
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 caaggtgctcatgtgcaccgacc 95
|||||||||||||||||||||||
Sbjct: 493 caaggtgctcatgtgcaccgacc 515
>gb|AV923014.1|AV923014 AV923014 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3f20 5', mRNA sequence
Length = 649
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 caaggtgctcatgtgcaccgacc 95
|||||||||||||||||||||||
Sbjct: 604 caaggtgctcatgtgcaccgacc 626
>gb|AV928934.1|AV928934 AV928934 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20e08 3', mRNA sequence
Length = 716
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 caaggtgctcatgtgcaccgacc 95
|||||||||||||||||||||||
Sbjct: 702 caaggtgctcatgtgcaccgacc 680
>gb|BQ468675.1|BQ468675 HM01P04T HM Hordeum vulgare subsp. vulgare cDNA clone HM01P04
5-PRIME, mRNA sequence
Length = 663
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 caaggtgctcatgtgcaccgacc 95
|||||||||||||||||||||||
Sbjct: 293 caaggtgctcatgtgcaccgacc 315
>gb|BQ762965.1|BQ762965 EBro02_SQ006_O16_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_O16 5', mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.004
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| ||| ||| | ||||||||| || |||||||||| ||||||
Sbjct: 470 ttcttcagagtcttcaaggatggatatggcaagcccctcgtcctcatgtgcagtgacccc 529
Query: 98 accaag 103
||||||
Sbjct: 530 accaag 535
>gb|BQ764136.1|BQ764136 EBro03_SQ006_J10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_J10 5', mRNA sequence
Length = 725
Score = 44.1 bits (22), Expect = 0.004
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| ||| ||| | ||||||||| || |||||||||| ||||||
Sbjct: 584 ttcttcagagtcttcaaggatggatatggcaagcccctcgtcctcatgtgcagtgacccc 643
Query: 98 accaag 103
||||||
Sbjct: 644 accaag 649
>gb|AL502243.1|AL502243 AL502243 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06P06u 3', mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.016
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 213 agagcttcggcgcgggaggcaagac 237
||||||||||||| |||||||||||
Sbjct: 282 agagcttcggcgccggaggcaagac 258
>gb|BF255160.2|BF255160 HVSMEf0006B22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006B22f, mRNA sequence
Length = 604
Score = 42.1 bits (21), Expect = 0.016
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| ||| ||| | ||||||||| || |||||||||| ||||||
Sbjct: 406 ttcttcagagtcttcaaggatggatatggcaagcccctcgtcctcatgtgcagtgacccc 465
Query: 98 accaa 102
|||||
Sbjct: 466 accaa 470
>gb|BE559132.2|BE559132 HV_CEb0023A11f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023A11f, mRNA sequence
Length = 533
Score = 42.1 bits (21), Expect = 0.016
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| ||| ||| | ||||||||| || |||||||||| ||||||
Sbjct: 440 ttcttcagagtcttcaaggatggatatggcaagcccctcgtcctcatgtgcagtgacccc 499
Query: 98 accaa 102
|||||
Sbjct: 500 accaa 504
>gb|BF260012.3|BF260012 HVSMEf0020N22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020N22f, mRNA sequence
Length = 778
Score = 42.1 bits (21), Expect = 0.016
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 213 agagcttcggcgcgggaggcaagac 237
||||||||||||| |||||||||||
Sbjct: 494 agagcttcggcgccggaggcaagac 518
>gb|BJ462585.1|BJ462585 BJ462585 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29e15 5', mRNA sequence
Length = 184
Score = 42.1 bits (21), Expect = 0.016
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 38 ttcttcagggtcttcagggacggacacggcaagcccaaggtgctcatgtgcaccgacccc 97
|||||||| ||||||| ||| ||| | ||||||||| || |||||||||| ||||||
Sbjct: 61 ttcttcagagtcttcaaggatggatatggcaagcccctcgtcctcatgtgcagtgacccc 120
Query: 98 accaa 102
|||||
Sbjct: 121 accaa 125
>gb|CA030695.1|CA030695 HX07N13r HX Hordeum vulgare subsp. vulgare cDNA clone HX07N13
5-PRIME, mRNA sequence
Length = 475
Score = 42.1 bits (21), Expect = 0.016
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 aggtgctcatgtgcaccgacc 95
|||||||||||||||||||||
Sbjct: 1 aggtgctcatgtgcaccgacc 21
>gb|AL503455.1|AL503455 AL503455 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02D08T 5', mRNA sequence
Length = 639
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 73 caaggtgctcatgtgcaccgacc 95
|||||| ||||||||||||||||
Sbjct: 491 caaggttctcatgtgcaccgacc 513
>gb|BF258931.3|BF258931 HVSMEf0017B15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0017B15f, mRNA sequence
Length = 801
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 73 caaggtgctcatgtgcaccgacc 95
|||||| ||||||||||||||||
Sbjct: 295 caaggtcctcatgtgcaccgacc 317
>gb|CD662700.1|CD662700 UCRHV18_02dd02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02dd02, mRNA sequence
Length = 316
Score = 38.2 bits (19), Expect = 0.25
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 344 tgggagatgaagaaaccnctgatgaacggcgcct 377
|||||||||||||| || ||||||| |||||||
Sbjct: 272 tgggagatgaagaagcccatgatgaatggcgcct 239
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,734
Number of Sequences: 312970
Number of extensions: 43734
Number of successful extensions: 14946
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14857
Number of HSP's gapped (non-prelim): 89
length of query: 463
length of database: 175,134,539
effective HSP length: 18
effective length of query: 445
effective length of database: 169,501,079
effective search space: 75427980155
effective search space used: 75427980155
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)