BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d01.yg.3.1
(808 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ466457.1|BQ466457 HT02J09r HT Hordeum vulgare subsp. v... 381 e-104
gb|BJ547520.1|BJ547520 BJ547520 K. Sato unpublished cDNA li... 381 e-104
gb|BU986241.1|BU986241 HF11C06r HF Hordeum vulgare subsp. v... 355 1e-096
gb|BQ471525.1|BQ471525 HV02L04r HV Hordeum vulgare subsp. v... 331 2e-089
gb|BJ546971.1|BJ546971 BJ546971 K. Sato unpublished cDNA li... 327 3e-088
gb|BU974777.1|BU974777 HB29B07r BC Hordeum vulgare subsp. v... 274 4e-072
gb|CA018645.1|CA018645 HV09D22r HV Hordeum vulgare subsp. v... 186 8e-046
gb|BG309730.1|BG309730 HVSMEc0012D18f Hordeum vulgare seedl... 151 4e-035
gb|BU994147.1|BU994147 HM05O13r HM Hordeum vulgare subsp. v... 149 2e-034
gb|CA001907.1|CA001907 HS05P06r HS Hordeum vulgare subsp. v... 127 6e-028
gb|BF266148.3|BF266148 HV_CEa0014E23f Hordeum vulgare seedl... 80 1e-013
gb|BF618934.2|BF618934 HVSMEc0008M01f Hordeum vulgare seedl... 48 5e-004
gb|BG344617.1|BG344617 HVSMEg0009N07f Hordeum vulgare pre-a... 48 5e-004
gb|BE213696.1|BE213696 HV_CEb0001A08f Hordeum vulgare seedl... 48 5e-004
gb|BG344468.2|BG344468 HVSMEg0009F21f Hordeum vulgare pre-a... 48 5e-004
gb|BE602798.2|BE602798 HVSMEh0101M07f Hordeum vulgare 5-45 ... 48 5e-004
gb|BQ466116.1|BQ466116 HT01K01T HT Hordeum vulgare subsp. v... 48 5e-004
gb|BM372496.2|BM372496 EBpi05_SQ003_C03_R pistil, 8 DPA, no... 48 5e-004
gb|BM372806.2|BM372806 EBpi05_SQ003_P17_R pistil, 8 DPA, no... 48 5e-004
gb|BU995799.1|BU995799 HM11G12r HM Hordeum vulgare subsp. v... 48 5e-004
gb|CA011626.1|CA011626 HT03B14r HT Hordeum vulgare subsp. v... 48 5e-004
gb|CA031903.1|CA031903 HX11H10r HX Hordeum vulgare subsp. v... 48 5e-004
gb|BE420822.1|BE420822 HWM002.H07 ITEC HWM Barley Leaf Libr... 46 0.002
gb|AW982307.3|AW982307 HVSMEg0002M16f Hordeum vulgare pre-a... 46 0.002
gb|BI777843.2|BI777843 EBro08_SQ002_E14_R root, 3 week, dro... 46 0.002
gb|CA024466.1|CA024466 HZ49G06r HZ Hordeum vulgare subsp. v... 46 0.002
gb|CA024487.1|CA024487 HZ49H04r HZ Hordeum vulgare subsp. v... 46 0.002
gb|BE602216.2|BE602216 HVSMEh0098B15f Hordeum vulgare 5-45 ... 40 0.11
gb|BQ755670.1|BQ755670 EBed07_SQ003_C09_R endosperm, 28 DPA... 38 0.44
gb|BE421905.1|BE421905 HWM016cC.11r ITEC HWM Barley Leaf Li... 36 1.7
gb|AL505147.1|AL505147 AL505147 Hordeum vulgare Barke roots... 36 1.7
gb|BF625277.2|BF625277 HVSMEa0008D05f Hordeum vulgare seedl... 36 1.7
gb|BF617742.2|BF617742 HVSMEc0001B02f Hordeum vulgare seedl... 36 1.7
gb|BF620464.2|BF620464 HVSMEc0019P10f Hordeum vulgare seedl... 36 1.7
gb|BG309197.1|BG309197 HVSMEc0004O06f Hordeum vulgare seedl... 36 1.7
gb|BI953975.1|BI953975 HVSMEm0015J22f Hordeum vulgare green... 36 1.7
gb|BI954503.1|BI954503 HVSMEm0018E24f Hordeum vulgare green... 36 1.7
gb|BI955094.1|BI955094 HVSMEm0021F09f Hordeum vulgare green... 36 1.7
gb|BF065359.1|BF065359 HV_CEb0012D14f Hordeum vulgare seedl... 36 1.7
gb|BF264194.2|BF264194 HV_CEa0008M10f Hordeum vulgare seedl... 36 1.7
gb|BI959112.1|BI959112 HVSMEn0018D18f Hordeum vulgare rachi... 36 1.7
gb|BF267125.3|BF267125 HV_CEa0017A10f Hordeum vulgare seedl... 36 1.7
gb|AV909008.1|AV909008 AV909008 K. Sato unpublished cDNA li... 36 1.7
gb|AV910657.1|AV910657 AV910657 K. Sato unpublished cDNA li... 36 1.7
gb|BJ446901.1|BJ446901 BJ446901 K. Sato unpublished cDNA li... 36 1.7
gb|BJ448547.1|BJ448547 BJ448547 K. Sato unpublished cDNA li... 36 1.7
gb|BJ449002.1|BJ449002 BJ449002 K. Sato unpublished cDNA li... 36 1.7
gb|BJ449907.1|BJ449907 BJ449907 K. Sato unpublished cDNA li... 36 1.7
gb|BJ450554.1|BJ450554 BJ450554 K. Sato unpublished cDNA li... 36 1.7
gb|BJ453685.1|BJ453685 BJ453685 K. Sato unpublished cDNA li... 36 1.7
gb|BQ468247.1|BQ468247 HP01I22T HP Hordeum vulgare subsp. v... 36 1.7
gb|BQ470611.1|BQ470611 HX03H22r HX Hordeum vulgare subsp. v... 36 1.7
gb|BQ661857.1|BQ661857 HP01I22w HP Hordeum vulgare subsp. v... 36 1.7
gb|BM377005.2|BM377005 EBem05_SQ003_N12_R embryo, 14 DPA, n... 36 1.7
gb|BM372486.2|BM372486 EBpi05_SQ003_B17_R pistil, 8 DPA, no... 36 1.7
gb|BU978502.1|BU978502 HA13G19r HA Hordeum vulgare subsp. v... 36 1.7
gb|BU978708.1|BU978708 HA14A21r HA Hordeum vulgare subsp. v... 36 1.7
gb|BU989728.1|BU989728 HF22I15r HF Hordeum vulgare subsp. v... 36 1.7
gb|CA017471.1|CA017471 HV05E22r HV Hordeum vulgare subsp. v... 36 1.7
gb|CA028111.1|CA028111 HZ61A12r HZ Hordeum vulgare subsp. v... 36 1.7
gb|CB879349.1|CB879349 HP11N15T HP Hordeum vulgare subsp. v... 36 1.7
gb|AL510981.1|AL510981 AL510981 Hordeum vulgare Barke devel... 34 6.8
gb|BG299920.2|BG299920 HVSMEa0022H20f Hordeum vulgare seedl... 34 6.8
gb|BE195679.1|BE195679 HVSMEh0090C07f Hordeum vulgare 5-45 ... 34 6.8
gb|BF628520.1|BF628520 HVSMEb0006G04f Hordeum vulgare seedl... 34 6.8
gb|BG300080.1|BG300080 HVSMEb0011F18f Hordeum vulgare seedl... 34 6.8
gb|BF616914.2|BF616914 HVSMEc0013M02f Hordeum vulgare seedl... 34 6.8
gb|BG366491.1|BG366491 HVSMEi0007D19f Hordeum vulgare 20 DA... 34 6.8
gb|BI948776.1|BI948776 HVSMEl0010M11f Hordeum vulgare spike... 34 6.8
gb|BI952832.1|BI952832 HVSMEm0007O12f Hordeum vulgare green... 34 6.8
gb|BI954316.1|BI954316 HVSMEm0017C22f Hordeum vulgare green... 34 6.8
gb|BI956226.1|BI956226 HVSMEn0001E12f Hordeum vulgare rachi... 34 6.8
gb|BI956239.1|BI956239 HVSMEn0001G12f Hordeum vulgare rachi... 34 6.8
gb|BI957323.1|BI957323 HVSMEn0008O20f Hordeum vulgare rachi... 34 6.8
gb|BG414200.1|BG414200 HVSMEk0001C02f Hordeum vulgare testa... 34 6.8
gb|BG415931.1|BG415931 HVSMEk0009B13f Hordeum vulgare testa... 34 6.8
gb|BG342921.2|BG342921 HVSMEg0001F05f Hordeum vulgare pre-a... 34 6.8
gb|BG365153.2|BG365153 HVSMEi0001I10f Hordeum vulgare 20 DA... 34 6.8
gb|BG365833.2|BG365833 HVSMEi0004G12f Hordeum vulgare 20 DA... 34 6.8
gb|BG365837.2|BG365837 HVSMEi0004G20f Hordeum vulgare 20 DA... 34 6.8
gb|BM368134.1|BM368134 EBed01_SQ002_E10_R endosperm, 6 DPA,... 34 6.8
gb|BM372159.1|BM372159 EBro03_SQ004_D01_R root, 3 week, wat... 34 6.8
gb|BM372646.1|BM372646 EBpi05_SQ003_I16_R pistil, 8 DPA, no... 34 6.8
gb|BM374725.1|BM374725 EBma05_SQ002_J22_R maternal, 12 DPA,... 34 6.8
gb|BM377525.1|BM377525 EBem04_SQ003_G11_R embryo, 12 DPA, n... 34 6.8
gb|AV925944.1|AV925944 AV925944 K. Sato unpublished cDNA li... 34 6.8
gb|AJ434356.1|AJ434356 AJ434356 S00002 Hordeum vulgare subs... 34 6.8
gb|AJ461469.1|AJ461469 AJ461469 S00002 Hordeum vulgare subs... 34 6.8
gb|BJ449420.1|BJ449420 BJ449420 K. Sato unpublished cDNA li... 34 6.8
gb|BJ464157.1|BJ464157 BJ464157 K. Sato unpublished cDNA li... 34 6.8
gb|BQ463297.1|BQ463297 HI04L06r HI Hordeum vulgare subsp. v... 34 6.8
gb|BQ466515.1|BQ466515 HT02M03r HT Hordeum vulgare subsp. v... 34 6.8
gb|BQ471417.1|BQ471417 HV02F23r HV Hordeum vulgare subsp. v... 34 6.8
gb|BQ664214.1|BQ664214 HV02F23u HV Hordeum vulgare subsp. v... 34 6.8
gb|BQ739920.1|BQ739920 HB05A12 HB Hordeum vulgare subsp. vu... 34 6.8
gb|BM441993.2|BM441993 EBan01_SQ001_I03_R anther, yellow st... 34 6.8
gb|BM376694.2|BM376694 EBem05_SQ002_P08_R embryo, 14 DPA, n... 34 6.8
gb|BM375779.2|BM375779 EBem06_SQ004_G08_R embryo, 21 DPA, n... 34 6.8
gb|BI779883.2|BI779883 EBem07_SQ001_G21_R embryo, 28 DPA, n... 34 6.8
gb|BM369350.2|BM369350 EBem07_SQ003_F08_R embryo, 28 DPA, n... 34 6.8
gb|BM369434.2|BM369434 EBem07_SQ003_J04_R embryo, 28 DPA, n... 34 6.8
gb|BM369582.2|BM369582 EBem07_SQ004_A13_R embryo, 28 DPA, n... 34 6.8
gb|BM098658.2|BM098658 EBem08_SQ003_L07_R embryo, 40 DPA, n... 34 6.8
gb|BI780801.2|BI780801 EBes01_SQ002_E01_R embryo sac, 4-6 D... 34 6.8
gb|BM099546.2|BM099546 EBes01_SQ003_I23_R embryo sac, 4-6 D... 34 6.8
gb|BM441543.2|BM441543 EBma05_SQ004_M03_R maternal, 12 DPA,... 34 6.8
gb|BI780237.2|BI780237 EBma08_SQ001_M20_R maternal, 28 DPA,... 34 6.8
gb|BM371644.2|BM371644 EBma08_SQ003_H13_R maternal, 28 DPA,... 34 6.8
gb|BM101397.2|BM101397 EBpi01_SQ003_L19_R pistil, 1 DPA, no... 34 6.8
gb|BI776527.2|BI776527 EBpi05_SQ001_M05_R pistil, 8 DPA, no... 34 6.8
gb|BM097159.2|BM097159 EBpi07_SQ002_J11_R pistil, 12 DPA, n... 34 6.8
gb|BM442784.2|BM442784 EBro02_SQ001_D13_R root, 3 week, hyd... 34 6.8
gb|BM096737.2|BM096737 EBma07_SQ001_G20_R maternal, 21 DPA,... 34 6.8
gb|BQ754532.1|BQ754532 EBed01_SQ003_B02_R endosperm, 6 DPA,... 34 6.8
gb|BQ754821.1|BQ754821 EBed01_SQ003_O20_R endosperm, 6 DPA,... 34 6.8
gb|BQ765545.1|BQ765545 EBro03_SQ007_A13_R root, 3 week, wat... 34 6.8
gb|BQ768403.1|BQ768403 EBro08_SQ011_I18_R root, 3 week, dro... 34 6.8
gb|BU974867.1|BU974867 HB29F15r BC Hordeum vulgare subsp. v... 34 6.8
gb|BU978833.1|BU978833 HA14G13r HA Hordeum vulgare subsp. v... 34 6.8
gb|BU980162.1|BU980162 HA18N17r HA Hordeum vulgare subsp. v... 34 6.8
gb|BU981409.1|BU981409 HA23I16r HA Hordeum vulgare subsp. v... 34 6.8
gb|BU983243.1|BU983243 HA29A12r HA Hordeum vulgare subsp. v... 34 6.8
gb|BU983498.1|BU983498 HA29P01r HA Hordeum vulgare subsp. v... 34 6.8
gb|BU985254.1|BU985254 HF06J10r HF Hordeum vulgare subsp. v... 34 6.8
gb|BU990150.1|BU990150 HF24D18r HF Hordeum vulgare subsp. v... 34 6.8
gb|BU994271.1|BU994271 HM06H01r HM Hordeum vulgare subsp. v... 34 6.8
gb|BU998017.1|BU998017 HI09L20r HI Hordeum vulgare subsp. v... 34 6.8
gb|CA003194.1|CA003194 HS09L04r HS Hordeum vulgare subsp. v... 34 6.8
gb|CA003391.1|CA003391 HS14E21r HS Hordeum vulgare subsp. v... 34 6.8
gb|CA003752.1|CA003752 HS15H06r HS Hordeum vulgare subsp. v... 34 6.8
gb|CA007452.1|CA007452 HU08A07r HU Hordeum vulgare subsp. v... 34 6.8
gb|CA012142.1|CA012142 HT04J03r HT Hordeum vulgare subsp. v... 34 6.8
gb|CA012414.1|CA012414 HT05F21r HT Hordeum vulgare subsp. v... 34 6.8
gb|CA013363.1|CA013363 HT08D10r HT Hordeum vulgare subsp. v... 34 6.8
gb|CA030123.1|CA030123 HX06C12r HX Hordeum vulgare subsp. v... 34 6.8
gb|CA032215.1|CA032215 HX12F23r HX Hordeum vulgare subsp. v... 34 6.8
gb|CK124164.1|CK124164 BES1824107e10 BES1824 Hordeum vulgar... 34 6.8
gb|AY137515.1| Hordeum vulgare subsp. vulgare hypersensitiv... 34 6.8
gb|AY137514.1| Hordeum vulgare subsp. vulgare hypersensitiv... 34 6.8
>gb|BQ466457.1|BQ466457 HT02J09r HT Hordeum vulgare subsp. vulgare cDNA clone HT02J09
5-PRIME, mRNA sequence
Length = 531
Score = 381 bits (192), Expect = e-104
Identities = 435/516 (84%)
Strand = Plus / Plus
Query: 198 gcgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccg 257
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 14 gcgccggcgagatggagctgaagcccggcatgtcggccctcgtcaccggcggcgcctccg 73
Query: 258 gcatcgggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttg 317
||||||||||||| || || || ||||||||| | |||| ||||||||||||| || |
Sbjct: 74 gcatcgggaaagcgctctgcatcgcttttgcacaaaagggtctatttgtgactgtggtcg 133
Query: 318 atttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaat 377
||||||| || ||||||||||||||||| || | |||||||||| ||||| | || |
Sbjct: 134 atttctctgaacaaaatggaagagaagttacttcgctagttcaaaaggaaaacaaaaagt 193
Query: 378 ttcacggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||| ||||||||| || | || ||| | ||||| || |||||||||||| | || ||
Sbjct: 194 ttcatggagatcttggagtaccgtctgccatattcgtcaagtgtgatgtttctgttgaag 253
Query: 438 ataatcttgctgcttgttttgagaagcatgtacagacatacaatggactagatatctgca 497
| |||| |||||| ||||| ||| |||||| | ||||| |||| ||||||||||||
Sbjct: 254 gtgatctagctgctgcttttgcgaaacatgtagacacatatggtggattagatatctgca 313
Query: 498 tcaactgtgctggaattgctaataaaacactagtttatgatgatacatctgatggaacta 557
|||| ||||||||||||||||| |||| ||||||||||||||| ||| || |||||||
Sbjct: 314 tcaattgtgctggaattgctaacctaacattagtttatgatgatatatccgacggaacta 373
Query: 558 gaacatggaggcatgctgttaatgtgaaccttgttgctgtcattgatggtactcgcattg 617
|||||||||||||| | ||||||||| |||| ||||| |||||||||||||||||||
Sbjct: 374 agacatggaggcatgccataaatgtgaactttgtcgctgttattgatggtactcgcattg 433
Query: 618 caagtcaaataatgcgaaaccaaaagaagcccggtgtcataataaacattggttcagcgg 677
||||||||||||||||| || |||||||| ||||||||||| || ||||||||||| |
Sbjct: 434 caagtcaaataatgcgatcccggaagaagcctggtgtcataatcaatattggttcagctg 493
Query: 678 caggtctttatcctatgttcctcgatcccgtatata 713
| || ||||||||||||||| ||||||| ||||||
Sbjct: 494 cgggcctttatcctatgttcgccgatcccatatata 529
>gb|BJ547520.1|BJ547520 BJ547520 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal28j17 5', mRNA sequence
Length = 571
Score = 381 bits (192), Expect = e-104
Identities = 435/516 (84%)
Strand = Plus / Plus
Query: 198 gcgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccg 257
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 52 gcgccggcgagatggagctgaagcccggcatgtcggccctcgtcaccggcggcgcctccg 111
Query: 258 gcatcgggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttg 317
||||||||||||| || || || ||||||||| | |||| ||||||||||||| || |
Sbjct: 112 gcatcgggaaagcgctctgcatcgcttttgcacaaaagggtctatttgtgactgtggtcg 171
Query: 318 atttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaat 377
||||||| || ||||||||||||||||| || | |||||||||| ||||| | || |
Sbjct: 172 atttctctgaacaaaatggaagagaagttacttcgctagttcaaaaggaaaacaaaaagt 231
Query: 378 ttcacggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||| ||||||||| || | || ||| | ||||| || |||||||||||| | || ||
Sbjct: 232 ttcatggagatcttggagtaccgtctgccatattcgtcaagtgtgatgtttctgttgaag 291
Query: 438 ataatcttgctgcttgttttgagaagcatgtacagacatacaatggactagatatctgca 497
| |||| |||||| ||||| ||| |||||| | ||||| |||| ||||||||||||
Sbjct: 292 gtgatctagctgctgcttttgcgaaacatgtagacacatatggtggattagatatctgca 351
Query: 498 tcaactgtgctggaattgctaataaaacactagtttatgatgatacatctgatggaacta 557
|||| ||||||||||||||||| |||| ||||||||||||||| ||| || |||||||
Sbjct: 352 tcaattgtgctggaattgctaacctaacattagtttatgatgatatatccgacggaacta 411
Query: 558 gaacatggaggcatgctgttaatgtgaaccttgttgctgtcattgatggtactcgcattg 617
|||||||||||||| | ||||||||| |||| ||||| |||||||||||||||||||
Sbjct: 412 agacatggaggcatgccataaatgtgaactttgtcgctgttattgatggtactcgcattg 471
Query: 618 caagtcaaataatgcgaaaccaaaagaagcccggtgtcataataaacattggttcagcgg 677
||||||||||||||||| || |||||||| ||||||||||| || ||||||||||| |
Sbjct: 472 caagtcaaataatgcgatcccggaagaagcctggtgtcataatcaatattggttcagctg 531
Query: 678 caggtctttatcctatgttcctcgatcccgtatata 713
| || ||||||||||||||| ||||||| ||||||
Sbjct: 532 cgggcctttatcctatgttcgccgatcccatatata 567
>gb|BU986241.1|BU986241 HF11C06r HF Hordeum vulgare subsp. vulgare cDNA clone HF11C06
5-PRIME, mRNA sequence
Length = 652
Score = 355 bits (179), Expect = 1e-096
Identities = 413/491 (84%)
Strand = Plus / Plus
Query: 317 gatttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaa 376
|||||||| || ||||||||||||||||| || | |||||||||| ||||| | ||
Sbjct: 2 gatttctctgaacaaaatggaagagaagttacttcgctagttcaaaaggaaaacaaaaag 61
Query: 377 tttcacggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgca 436
||||| ||||||||| || | || ||| | ||||| || |||||||||||| | || |
Sbjct: 62 tttcatggagatcttggagtaccgtctgccatattcgtcaagtgtgatgtttctgttgaa 121
Query: 437 gataatcttgctgcttgttttgagaagcatgtacagacatacaatggactagatatctgc 496
| | |||| |||||| ||||| ||| |||||| | ||||| |||| |||||||||||
Sbjct: 122 ggtgatctagctgctgcttttgcgaaacatgtagacacatatggtggattagatatctgc 181
Query: 497 atcaactgtgctggaattgctaataaaacactagtttatgatgatacatctgatggaact 556
||||| ||||||||||||||||| |||| ||||||||||||||| ||| || ||||||
Sbjct: 182 atcaattgtgctggaattgctaacctaacattagtttatgatgatatatccgacggaact 241
Query: 557 agaacatggaggcatgctgttaatgtgaaccttgttgctgtcattgatggtactcgcatt 616
| |||||||||||||| | ||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 242 aagacatggaggcatgccataaatgtgaactttgtcgctgttattgatggtactcgcatt 301
Query: 617 gcaagtcaaataatgcgaaaccaaaagaagcccggtgtcataataaacattggttcagcg 676
|||||||||||||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct: 302 gcaagtcaaataatgcgatcccggaagaagcctggtgtcataatcaatattggttcagct 361
Query: 677 gcaggtctttatcctatgttcctcgatcccgtatatagtgcggcaaaagggggtgtggtt 736
|| || ||||||||||||||| ||||||| |||||| | | ||||||| ||||| |||
Sbjct: 362 gcgggcctttatcctatgttcgccgatcccatatataccgggacaaaaggtggtgttgtt 421
Query: 737 atgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctctgc 796
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atgtttactcgatcacttgctccattgaaacgccatggtgttcgtgtcaatgtgctctgc 481
Query: 797 ccagagtttgt 807
|| ||||||||
Sbjct: 482 cccgagtttgt 492
>gb|BQ471525.1|BQ471525 HV02L04r HV Hordeum vulgare subsp. vulgare cDNA clone HV02L04
5-PRIME, mRNA sequence
Length = 626
Score = 331 bits (167), Expect = 2e-089
Identities = 287/327 (87%)
Strand = Plus / Plus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 43 tggattagatatctgcatcaattgtgctggaattgctaacctaacattagtttatgatga 102
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|| ||| || ||||||| |||||||||||||| | ||||||||| |||| ||||| ||
Sbjct: 103 tatatccgacggaactaagacatggaggcatgccataaatgtgaactttgtcgctgttat 162
Query: 601 tgatggtactcgcattgcaagtcaaataatgcgaaaccaaaagaagcccggtgtcataat 660
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 163 tgatggtactcgcattgcaagtcaaataatgcgatcccggaagaagcctggtgtcataat 222
Query: 661 aaacattggttcagcggcaggtctttatcctatgttcctcgatcccgtatatagtgcggc 720
|| ||||||||||| || || ||||||||||||||| ||||||| |||||| | | |
Sbjct: 223 caatattggttcagctgcgggcctttatcctatgttcgccgatcccatatataccgggac 282
Query: 721 aaaagggggtgtggttatgtttacaagatcactttctccattgaaacgccatggtgttcg 780
|||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 283 aaaaggtggtgttgttatgtttactcgatcacttgctccattgaaacgccatggtgttcg 342
Query: 781 tgtcaatgtgctctgcccagagtttgt 807
|||||||||||||||||| ||||||||
Sbjct: 343 tgtcaatgtgctctgccccgagtttgt 369
>gb|BJ546971.1|BJ546971 BJ546971 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23j22 5', mRNA sequence
Length = 495
Score = 327 bits (165), Expect = 3e-088
Identities = 369/437 (84%)
Strand = Plus / Plus
Query: 198 gcgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccg 257
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 52 gcgccggcgagatggagctgaagcccggcatgtcggccctcgtcaccggcggcgcctccg 111
Query: 258 gcatcgggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttg 317
||||||||||||| || || || ||||||||| | |||| ||||||||||||| || |
Sbjct: 112 gcatcgggaaagcgctctgcatcgcttttgcacaaaagggtctatttgtgactgtggtcg 171
Query: 318 atttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaat 377
||||||| || ||||||||||||||||| || | |||||||||| ||||| | || |
Sbjct: 172 atttctctgaacaaaatggaagagaagttacttcgctagttcaaaaggaaaacaaaaagt 231
Query: 378 ttcacggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||| ||||||||| || | || ||| | ||||| || |||||||||||| | || ||
Sbjct: 232 ttcatggagatcttggagtaccgtctgccatattcgtcaagtgtgatgtttctgttgaag 291
Query: 438 ataatcttgctgcttgttttgagaagcatgtacagacatacaatggactagatatctgca 497
| |||| |||||| ||||| ||| |||||| | ||||| |||| ||||||||||||
Sbjct: 292 gtgatctagctgctgcttttgcgaaacatgtagacacatatggtggattagatatctgca 351
Query: 498 tcaactgtgctggaattgctaataaaacactagtttatgatgatacatctgatggaacta 557
|||| ||||||||||||||||| |||| ||||||||||||||| ||| || |||||||
Sbjct: 352 tcaattgtgctggaattgctaacctaacattagtttatgatgatatatccgacggaacta 411
Query: 558 gaacatggaggcatgctgttaatgtgaaccttgttgctgtcattgatggtactcgcattg 617
|||||||||||||| | ||||||||| |||| ||||| |||||||||||||||||||
Sbjct: 412 agacatggaggcatgccataaatgtgaactttgtcgctgttattgatggtactcgcattg 471
Query: 618 caagtcaaataatgcga 634
|||||||||||||||||
Sbjct: 472 caagtcaaataatgcga 488
>gb|BU974777.1|BU974777 HB29B07r BC Hordeum vulgare subsp. vulgare cDNA clone HB29B07
5-PRIME, mRNA sequence
Length = 431
Score = 274 bits (138), Expect = 4e-072
Identities = 339/406 (83%)
Strand = Plus / Plus
Query: 229 gtcggcgctcgtcaccggcggcgcctccggcatcgggaaagcactttgtattgcttttgc 288
|||||| ||||||||||||||||||||||||||||||||||| || || || ||||||||
Sbjct: 11 gtcggccctcgtcaccggcggcgcctccggcatcgggaaagcgctctgcatcgcttttgc 70
Query: 289 aaggaggggtttatttgtgactgtcgttgatttctcagaggaaaatggaagagaagttgc 348
| | |||| ||||||||||||| || |||||||| || ||||||||||||||||| |
Sbjct: 71 acaaaagggtctatttgtgactgtggtcgatttctctgaacaaaatggaagagaagttac 130
Query: 349 tacattagttcaaaaagaaaatagcaaatttcacggagatcttagaattccatcttcaat 408
| | |||||||||| ||||| | || ||||| ||||||||| || | || ||| | ||
Sbjct: 131 ttcgctagttcaaaaggaaaacaaaaagtttcatggagatcttggagtaccgtctgccat 190
Query: 409 atttgttaagtgtgatgttagtaatgcagataatcttgctgcttgttttgagaagcatgt 468
||| || |||||||||||| | || || | |||| |||||| ||||| ||| |||||
Sbjct: 191 attcgtcaagtgtgatgtttctgttgaaggtgatctagctgctgcttttgcgaaacatgt 250
Query: 469 acagacatacaatggactagatatctgcatcaactgtgctggaattgctaataaaacact 528
| | ||||| |||| |||||||||||||||| ||||||||||||||||| |||| |
Sbjct: 251 agacacatatggtggattagatatctgcatcaattgtgctggaattgctaacctaacatt 310
Query: 529 agtttatgatgatacatctgatggaactagaacatggaggcatgctgttaatgtgaacct 588
|||||||||||||| ||| || ||||||| |||||||||||||| | ||||||||| |
Sbjct: 311 agtttatgatgatatatccgacggaactaagacatggaggcatgccataaatgtgaactt 370
Query: 589 tgttgctgtcattgatggtactcgcattgcaagtcaaataatgcga 634
||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtcgctgttattgatggtactcgcattgcaagtcaaataatgcga 416
>gb|CA018645.1|CA018645 HV09D22r HV Hordeum vulgare subsp. vulgare cDNA clone HV09D22
5-PRIME, mRNA sequence
Length = 450
Score = 186 bits (94), Expect = 8e-046
Identities = 196/230 (85%)
Strand = Plus / Plus
Query: 198 gcgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccg 257
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 150 gcgccggcgagatggagctgaagcccggcatgtcggccctcgtcaccggcggcgcctccg 209
Query: 258 gcatcgggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttg 317
||||||||||||| || || || ||||||||| | |||| ||||||||||||| || |
Sbjct: 210 gcatcgggaaagcgctctgcatcgcttttgcacaaaagggtctatttgtgactgtggtcg 269
Query: 318 atttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaat 377
||||||| || ||||||||||||||||| || | |||||||||| ||||| | || |
Sbjct: 270 atttctctgaacaaaatggaagagaagttacttcgctagttcaaaaggaaaacaaaaagt 329
Query: 378 ttcacggagatcttagaattccatcttcaatatttgttaagtgtgatgtt 427
|||| ||||||||| || | || ||| | ||||| || ||||||||||||
Sbjct: 330 ttcatggagatcttggagtaccgtctgccatattcgtcaagtgtgatgtt 379
>gb|BG309730.1|BG309730 HVSMEc0012D18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012D18f, mRNA sequence
Length = 900
Score = 151 bits (76), Expect = 4e-035
Identities = 148/172 (86%)
Strand = Plus / Plus
Query: 198 gcgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccg 257
||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||
Sbjct: 130 gcgccggcgagatggagctgaagcccggcatgtcgggcctggtcaccggcggcgcctccg 189
Query: 258 gcatcgggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttg 317
||||||||||||| || || || ||||||||| | |||| |||||| |||||| || |
Sbjct: 190 gcatcgggaaagcgctctgcatcgcttttgcacaaaagggtctatttgggactgtggtcg 249
Query: 318 atttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaa 369
||||||| || ||||||||||||||||| || | |||||||||| |||||
Sbjct: 250 atttctctgaacaaaatggaagagaagttacttcgctagttcaaaaggaaaa 301
>gb|BU994147.1|BU994147 HM05O13r HM Hordeum vulgare subsp. vulgare cDNA clone HM05O13
5-PRIME, mRNA sequence
Length = 609
Score = 149 bits (75), Expect = 2e-034
Identities = 120/135 (88%)
Strand = Plus / Plus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||| ||||| |||||||||||||||||||| ||| |||||| | |||||||||||||
Sbjct: 473 tggattagatgtctgcatcaactgtgctggatttgtcaataaatccttagtttatgatga 532
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|||||| ||||||||| |||||||||| |||||| |||||||||||||||||||| ||
Sbjct: 533 tacatccaatggaactaagacatggaggcgtgctgtaaatgtgaaccttgttgctgttat 592
Query: 601 tgatggtactcgcat 615
|||||||||||||||
Sbjct: 593 tgatggtactcgcat 607
Score = 121 bits (61), Expect = 4e-026
Identities = 136/161 (84%)
Strand = Plus / Plus
Query: 208 gatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccggcatcgggaa 267
|||| |||| ||||| ||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct: 200 gatgaagctgaagccaggcatgtcggccctcgtcaccggcggcggctccggcattgggaa 259
Query: 268 agcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttctcaga 327
||||||||| ||||| ||||| || |||| || |||||||||||| |||||||| ||
Sbjct: 260 agcactttgcgttgctcttgcacagaagggtctagctgtgactgtcgtcgatttctctga 319
Query: 328 ggaaaatggaagagaagttgctacattagttcaaaaagaaa 368
||| ||||| || ||||||| ||||| ||||||| ||||
Sbjct: 320 agaacatggaggacaagttgcggcattaattcaaaaggaaa 360
>gb|CA001907.1|CA001907 HS05P06r HS Hordeum vulgare subsp. vulgare cDNA clone HS05P06
5-PRIME, mRNA sequence
Length = 676
Score = 127 bits (64), Expect = 6e-028
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 720 caaaagggggtgtggttatgtttacaagatcactttctccattgaaacgccatggtgttc 779
||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 14 caaaaggtggtgttgttatgtttactcgatcacttgctccattgaaacgccatggtgttc 73
Query: 780 gtgtcaatgtgctctgcccagagtttgt 807
||||||||||||||||||| ||||||||
Sbjct: 74 gtgtcaatgtgctctgccccgagtttgt 101
>gb|BF266148.3|BF266148 HV_CEa0014E23f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0014E23f, mRNA sequence
Length = 850
Score = 79.8 bits (40), Expect = 1e-013
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 255 ccggcatcgggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcg 314
|||||||||||||||| || || || ||||||||| | |||| ||||||||||||| |
Sbjct: 1 ccggcatcgggaaagcgctctgcatcgcttttgcacaaaagggtctatttgtgactgtgg 60
Query: 315 ttgatttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaa 369
| |||||||| || ||||||||||||||||| || | |||||||||| |||||
Sbjct: 61 tcgatttctctgaacaaaatggaagagaagttacttcnctagttcaaaaggaaaa 115
Score = 38.2 bits (19), Expect = 0.44
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 489 atatctgcatcaactgtgctggaattgctaa 519
||||||||||||| || |||||||||||||
Sbjct: 236 atatctgcatcaattgaactggaattgctaa 266
>gb|BF618934.2|BF618934 HVSMEc0008M01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0008M01f, mRNA sequence
Length = 588
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 188 cggcgctggtcaccggcggcggctccggcatc 219
>gb|BG344617.1|BG344617 HVSMEg0009N07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009N07f, mRNA sequence
Length = 829
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 184 cggcgctggtcaccggcggcggctccggcatc 215
>gb|BE213696.1|BE213696 HV_CEb0001A08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001A08f, mRNA sequence
Length = 1007
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 109 cggcgctggtcaccggcggcggctccggcatc 140
>gb|BG344468.2|BG344468 HVSMEg0009F21f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009F21f, mRNA sequence
Length = 796
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 180 cggcgctggtcaccggcggcggctccggcatc 211
>gb|BE602798.2|BE602798 HVSMEh0101M07f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0101M07f, mRNA sequence
Length = 736
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 109 cggcgctggtcaccggcggcggctccggcatc 140
>gb|BQ466116.1|BQ466116 HT01K01T HT Hordeum vulgare subsp. vulgare cDNA clone HT01K01
5-PRIME, mRNA sequence
Length = 689
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 49 cggcgctggtcaccggcggcggctccggcatc 80
>gb|BM372496.2|BM372496 EBpi05_SQ003_C03_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_C03 5', mRNA sequence
Length = 510
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 188 cggcgctggtcaccggcggcggctccggcatc 219
>gb|BM372806.2|BM372806 EBpi05_SQ003_P17_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_P17 5', mRNA sequence
Length = 296
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 129 cggcgctggtcaccggcggcggctccggcatc 160
>gb|BU995799.1|BU995799 HM11G12r HM Hordeum vulgare subsp. vulgare cDNA clone HM11G12
5-PRIME, mRNA sequence
Length = 635
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 106 cggcgctggtcaccggcggcggctccggcatc 137
>gb|CA011626.1|CA011626 HT03B14r HT Hordeum vulgare subsp. vulgare cDNA clone HT03B14
5-PRIME, mRNA sequence
Length = 513
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 138 cggcgctggtcaccggcggcggctccggcatc 169
>gb|CA031903.1|CA031903 HX11H10r HX Hordeum vulgare subsp. vulgare cDNA clone HX11H10
5-PRIME, mRNA sequence
Length = 658
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatc 262
||||||| ||||||||||||| ||||||||||
Sbjct: 112 cggcgctggtcaccggcggcggctccggcatc 143
>gb|BE420822.1|BE420822 HWM002.H07 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM002.H07, mRNA sequence
Length = 820
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||||||||||||||||||| || ||||||||||
Sbjct: 154 cggcgctcgtcaccggcggcacccgcggcatcggg 188
>gb|AW982307.3|AW982307 HVSMEg0002M16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002M16f, mRNA sequence
Length = 820
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||||||||||||||||||| || ||||||||||
Sbjct: 66 cggcgctcgtcaccggcggcacccgcggcatcggg 100
>gb|BI777843.2|BI777843 EBro08_SQ002_E14_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_E14 5', mRNA sequence
Length = 547
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||||||||||||||||||| || ||||||||||
Sbjct: 52 cggcgctcgtcaccggcggcacccgcggcatcggg 86
>gb|CA024466.1|CA024466 HZ49G06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49G06
5-PRIME, mRNA sequence
Length = 477
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||||||||||||||||||| || ||||||||||
Sbjct: 105 cggcgctcgtcaccggcggcacccgcggcatcggg 139
>gb|CA024487.1|CA024487 HZ49H04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49H04
5-PRIME, mRNA sequence
Length = 619
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||||||||||||||||||| || ||||||||||
Sbjct: 105 cggcgctcgtcaccggcggcacccgcggcatcggg 139
>gb|BE602216.2|BE602216 HVSMEh0098B15f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098B15f, mRNA sequence
Length = 509
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 96 cggcgctcgtcaccggcggc 115
>gb|BQ755670.1|BQ755670 EBed07_SQ003_C09_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ003_C09 5', mRNA sequence
Length = 653
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226 catgtcggcgctcgtcacc 244
|||||||||||||||||||
Sbjct: 626 catgtcggcgctcgtcacc 608
>gb|BE421905.1|BE421905 HWM016cC.11r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM016cC.11, mRNA sequence
Length = 730
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 174 cggcggcgcctccggcat 191
>gb|AL505147.1|AL505147 AL505147 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I19V 5', mRNA sequence
Length = 647
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 236 ctcgtcaccggcggcgcc 253
||||||||||||||||||
Sbjct: 97 ctcgtcaccggcggcgcc 114
>gb|BF625277.2|BF625277 HVSMEa0008D05f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008D05f, mRNA sequence
Length = 470
Score = 36.2 bits (18), Expect = 1.7
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||| ||||||||| | |||||||||||||
Sbjct: 255 gctcatcaccggcgcctcctccggcatcgg 284
>gb|BF617742.2|BF617742 HVSMEc0001B02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0001B02f, mRNA sequence
Length = 826
Score = 36.2 bits (18), Expect = 1.7
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||| ||||||||| | |||||||||||||
Sbjct: 245 gctcatcaccggcgcctcctccggcatcgg 274
>gb|BF620464.2|BF620464 HVSMEc0019P10f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019P10f, mRNA sequence
Length = 684
Score = 36.2 bits (18), Expect = 1.7
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||| ||||||||| | |||||||||||||
Sbjct: 238 gctcatcaccggcgcctcctccggcatcgg 267
>gb|BG309197.1|BG309197 HVSMEc0004O06f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0004O06f, mRNA sequence
Length = 840
Score = 36.2 bits (18), Expect = 1.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 236 ctcgtcaccggcggcgcctccg 257
||||||||| ||||||||||||
Sbjct: 438 ctcgtcaccagcggcgcctccg 459
>gb|BI953975.1|BI953975 HVSMEm0015J22f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0015J22f, mRNA sequence
Length = 650
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 114 cggcggcgcctccggcat 131
>gb|BI954503.1|BI954503 HVSMEm0018E24f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0018E24f, mRNA sequence
Length = 678
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 236 ctcgtcaccggcggcgcc 253
||||||||||||||||||
Sbjct: 156 ctcgtcaccggcggcgcc 173
>gb|BI955094.1|BI955094 HVSMEm0021F09f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0021F09f, mRNA sequence
Length = 671
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 210 cggcggcgcctccggcat 227
>gb|BF065359.1|BF065359 HV_CEb0012D14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012D14f, mRNA sequence
Length = 543
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 196 cggcggcgcctccggcat 213
>gb|BF264194.2|BF264194 HV_CEa0008M10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0008M10f, mRNA sequence
Length = 433
Score = 36.2 bits (18), Expect = 1.7
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||| ||||||||| | |||||||||||||
Sbjct: 260 gctcatcaccggcgcctcctccggcatcgg 289
>gb|BI959112.1|BI959112 HVSMEn0018D18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018D18f, mRNA sequence
Length = 661
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 262 cggcggcgcctccggcat 279
>gb|BF267125.3|BF267125 HV_CEa0017A10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0017A10f, mRNA sequence
Length = 849
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 236 ctcgtcaccggcggcgcc 253
||||||||||||||||||
Sbjct: 248 ctcgtcaccggcggcgcc 265
>gb|AV909008.1|AV909008 AV909008 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11d21 5', mRNA sequence
Length = 634
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 64 cggcggcgcctccggcat 81
>gb|AV910657.1|AV910657 AV910657 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1g20 5', mRNA sequence
Length = 670
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 48 cggcggcgcctccggcat 65
>gb|BJ446901.1|BJ446901 BJ446901 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e14 5', mRNA sequence
Length = 610
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 115 cggcggcgcctccggcat 132
>gb|BJ448547.1|BJ448547 BJ448547 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20f08 5', mRNA sequence
Length = 599
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 69 cggcggcgcctccggcat 86
>gb|BJ449002.1|BJ449002 BJ449002 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak22a15 5', mRNA sequence
Length = 637
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 104 cggcggcgcctccggcat 121
>gb|BJ449907.1|BJ449907 BJ449907 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27d08 5', mRNA sequence
Length = 667
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 103 cggcggcgcctccggcat 120
>gb|BJ450554.1|BJ450554 BJ450554 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30c12 5', mRNA sequence
Length = 682
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 182 cggcggcgcctccggcat 199
>gb|BJ453685.1|BJ453685 BJ453685 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak44c01 5', mRNA sequence
Length = 589
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 79 cggcggcgcctccggcat 96
>gb|BQ468247.1|BQ468247 HP01I22T HP Hordeum vulgare subsp. vulgare cDNA clone HP01I22
5-PRIME, mRNA sequence
Length = 608
Score = 36.2 bits (18), Expect = 1.7
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||| ||||||||| | |||||||||||||
Sbjct: 263 gctcatcaccggcgcctcctccggcatcgg 292
>gb|BQ470611.1|BQ470611 HX03H22r HX Hordeum vulgare subsp. vulgare cDNA clone HX03H22
5-PRIME, mRNA sequence
Length = 475
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 236 ctcgtcaccggcggcgcc 253
||||||||||||||||||
Sbjct: 150 ctcgtcaccggcggcgcc 167
>gb|BQ661857.1|BQ661857 HP01I22w HP Hordeum vulgare subsp. vulgare cDNA clone HP01I22
3-PRIME, mRNA sequence
Length = 683
Score = 36.2 bits (18), Expect = 1.7
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||| ||||||||| | |||||||||||||
Sbjct: 473 gctcatcaccggcgcctcctccggcatcgg 444
>gb|BM377005.2|BM377005 EBem05_SQ003_N12_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_N12 5', mRNA sequence
Length = 430
Score = 36.2 bits (18), Expect = 1.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 236 ctcgtcaccggcggcgcctccg 257
||||||||| ||||||||||||
Sbjct: 168 ctcgtcaccagcggcgcctccg 189
>gb|BM372486.2|BM372486 EBpi05_SQ003_B17_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_B17 5', mRNA sequence
Length = 363
Score = 36.2 bits (18), Expect = 1.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 241 caccggcggcgcctccggcatc 262
||||||||||| ||||||||||
Sbjct: 197 caccggcggcggctccggcatc 218
>gb|BU978502.1|BU978502 HA13G19r HA Hordeum vulgare subsp. vulgare cDNA clone HA13G19
5-PRIME, mRNA sequence
Length = 432
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 255 cggcggcgcctccggcat 272
>gb|BU978708.1|BU978708 HA14A21r HA Hordeum vulgare subsp. vulgare cDNA clone HA14A21
5-PRIME, mRNA sequence
Length = 626
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 256 cggcggcgcctccggcat 273
>gb|BU989728.1|BU989728 HF22I15r HF Hordeum vulgare subsp. vulgare cDNA clone HF22I15
5-PRIME, mRNA sequence
Length = 574
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 244 cggcggcgcctccggcat 261
||||||||||||||||||
Sbjct: 50 cggcggcgcctccggcat 67
>gb|CA017471.1|CA017471 HV05E22r HV Hordeum vulgare subsp. vulgare cDNA clone HV05E22
5-PRIME, mRNA sequence
Length = 500
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 236 ctcgtcaccggcggcgcc 253
||||||||||||||||||
Sbjct: 86 ctcgtcaccggcggcgcc 103
>gb|CA028111.1|CA028111 HZ61A12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61A12
5-PRIME, mRNA sequence
Length = 235
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 236 ctcgtcaccggcggcgcc 253
||||||||||||||||||
Sbjct: 137 ctcgtcaccggcggcgcc 154
>gb|CB879349.1|CB879349 HP11N15T HP Hordeum vulgare subsp. vulgare cDNA clone HP11N15
5-PRIME, mRNA sequence
Length = 604
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 236 ctcgtcaccggcggcgcc 253
||||||||||||||||||
Sbjct: 166 ctcgtcaccggcggcgcc 183
>gb|AL510981.1|AL510981 AL510981 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06J24u 3',
mRNA sequence
Length = 647
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 234 acccctgcgccggcgag 250
>gb|BG299920.2|BG299920 HVSMEa0022H20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0022H20f, mRNA sequence
Length = 808
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 239 acccctgcgccggcgag 255
>gb|BE195679.1|BE195679 HVSMEh0090C07f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0090C07f, mRNA sequence
Length = 946
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 234 acccctgcgccggcgag 250
>gb|BF628520.1|BF628520 HVSMEb0006G04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006G04f, mRNA sequence
Length = 728
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 362 aaagaaaatagcaaatt 378
|||||||||||||||||
Sbjct: 713 aaagaaaatagcaaatt 697
>gb|BG300080.1|BG300080 HVSMEb0011F18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011F18f, mRNA sequence
Length = 535
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 243 ccggcggcgcctccggc 259
|||||||||||||||||
Sbjct: 264 ccggcggcgcctccggc 248
>gb|BF616914.2|BF616914 HVSMEc0013M02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0013M02f, mRNA sequence
Length = 572
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 242 acccctgcgccggcgag 258
>gb|BG366491.1|BG366491 HVSMEi0007D19f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0007D19f, mRNA sequence
Length = 476
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 249 acccctgcgccggcgag 265
>gb|BI948776.1|BI948776 HVSMEl0010M11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010M11f, mRNA sequence
Length = 832
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 228 tgtcggcgctcgtcacc 244
|||||||||||||||||
Sbjct: 198 tgtcggcgctcgtcacc 182
>gb|BI952832.1|BI952832 HVSMEm0007O12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007O12f, mRNA sequence
Length = 423
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 255 acccctgcgccggcgag 271
>gb|BI954316.1|BI954316 HVSMEm0017C22f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0017C22f, mRNA sequence
Length = 691
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 579 atgtgaaccttgttgct 595
|||||||||||||||||
Sbjct: 433 atgtgaaccttgttgct 449
>gb|BI956226.1|BI956226 HVSMEn0001E12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001E12f, mRNA sequence
Length = 611
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 187 cacccacccctgcgccg 203
|||||||||||||||||
Sbjct: 159 cacccacccctgcgccg 175
>gb|BI956239.1|BI956239 HVSMEn0001G12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001G12f, mRNA sequence
Length = 597
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 187 cacccacccctgcgccg 203
|||||||||||||||||
Sbjct: 158 cacccacccctgcgccg 174
>gb|BI957323.1|BI957323 HVSMEn0008O20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008O20f, mRNA sequence
Length = 656
Score = 34.2 bits (17), Expect = 6.8
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 71 ctccttccccacttcggcctc 91
|||||||||||||||| ||||
Sbjct: 546 ctccttccccacttcgtcctc 526
>gb|BG414200.1|BG414200 HVSMEk0001C02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0001C02f, mRNA sequence
Length = 564
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 140 tcaccggcgcctcctccggcatcgg 164
>gb|BG415931.1|BG415931 HVSMEk0009B13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009B13f, mRNA sequence
Length = 944
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 206 tcaccggcgcctcctccggcatcgg 230
>gb|BG342921.2|BG342921 HVSMEg0001F05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001F05f, mRNA sequence
Length = 562
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 168 agaggaaaatggaagag 184
>gb|BG365153.2|BG365153 HVSMEi0001I10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0001I10f, mRNA sequence
Length = 792
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 202 tcaccggcgcctcctccggcatcgg 226
>gb|BG365833.2|BG365833 HVSMEi0004G12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004G12f, mRNA sequence
Length = 481
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 202 tcaccggcgcctcctccggcatcgg 226
>gb|BG365837.2|BG365837 HVSMEi0004G20f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004G20f, mRNA sequence
Length = 483
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 202 tcaccggcgcctcctccggcatcgg 226
>gb|BM368134.1|BM368134 EBed01_SQ002_E10_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_E10 5', mRNA sequence
Length = 403
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 144 agaggaaaatggaagag 160
>gb|BM372159.1|BM372159 EBro03_SQ004_D01_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_D01 5', mRNA sequence
Length = 335
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 72 agaggaaaatggaagag 88
>gb|BM372646.1|BM372646 EBpi05_SQ003_I16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_I16 5', mRNA sequence
Length = 395
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 137 agaggaaaatggaagag 153
>gb|BM374725.1|BM374725 EBma05_SQ002_J22_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_J22 5', mRNA sequence
Length = 405
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 135 agaggaaaatggaagag 151
>gb|BM377525.1|BM377525 EBem04_SQ003_G11_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ003_G11 5', mRNA sequence
Length = 416
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 146 agaggaaaatggaagag 162
>gb|AV925944.1|AV925944 AV925944 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg21 5', mRNA sequence
Length = 599
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 176 acccctgcgccggcgag 192
>gb|AJ434356.1|AJ434356 AJ434356 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200064F07F1, mRNA sequence
Length = 428
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 164 agaggaaaatggaagag 180
>gb|AJ461469.1|AJ461469 AJ461469 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200063E02F1, mRNA sequence
Length = 240
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 106 agaggaaaatggaagag 122
>gb|BJ449420.1|BJ449420 BJ449420 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23p02 5', mRNA sequence
Length = 655
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 260 acccctgcgccggcgag 276
>gb|BJ464157.1|BJ464157 BJ464157 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33b17 5', mRNA sequence
Length = 598
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 579 atgtgaaccttgttgct 595
|||||||||||||||||
Sbjct: 422 atgtgaaccttgttgct 438
>gb|BQ463297.1|BQ463297 HI04L06r HI Hordeum vulgare subsp. vulgare cDNA clone HI04L06
5-PRIME, mRNA sequence
Length = 531
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 158 agaggaaaatggaagag 174
>gb|BQ466515.1|BQ466515 HT02M03r HT Hordeum vulgare subsp. vulgare cDNA clone HT02M03
5-PRIME, mRNA sequence
Length = 605
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 158 acccctgcgccggcgag 174
>gb|BQ471417.1|BQ471417 HV02F23r HV Hordeum vulgare subsp. vulgare cDNA clone HV02F23
5-PRIME, mRNA sequence
Length = 537
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 164 agaggaaaatggaagag 180
>gb|BQ664214.1|BQ664214 HV02F23u HV Hordeum vulgare subsp. vulgare cDNA clone HV02F23
3-PRIME, mRNA sequence
Length = 483
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 373 agaggaaaatggaagag 357
>gb|BQ739920.1|BQ739920 HB05A12 HB Hordeum vulgare subsp. vulgare cDNA clone HB05A12
similar to NP_199970.1| (NM_124536) putative protein
[Arabidopsis thaliana] gi|9758199|dbj|BAB08673.1|
(AB018109) gb|AAF03497.1 gene_id:K17N15.12 similar to
unknown protein [Arabidopsis thaliana], mRNA sequence
Length = 634
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 202 acccctgcgccggcgag 218
>gb|BM441993.2|BM441993 EBan01_SQ001_I03_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_I03 5', mRNA sequence
Length = 413
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 154 agaggaaaatggaagag 170
>gb|BM376694.2|BM376694 EBem05_SQ002_P08_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_P08 5', mRNA sequence
Length = 411
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 146 agaggaaaatggaagag 162
>gb|BM375779.2|BM375779 EBem06_SQ004_G08_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_G08 5', mRNA sequence
Length = 263
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 163 tcaccggcgcctcctccggcatcgg 187
>gb|BI779883.2|BI779883 EBem07_SQ001_G21_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ001_G21 5', mRNA sequence
Length = 490
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 240 acccctgcgccggcgag 256
>gb|BM369350.2|BM369350 EBem07_SQ003_F08_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_F08 5', mRNA sequence
Length = 410
Score = 34.2 bits (17), Expect = 6.8
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 236 ctcgtcaccggcggcgcctccggcatcgg 264
||||||||||||| | |||||| ||||||
Sbjct: 269 ctcgtcaccggcgcctcctccgccatcgg 297
>gb|BM369434.2|BM369434 EBem07_SQ003_J04_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_J04 5', mRNA sequence
Length = 466
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 127 agaggaaaatggaagag 143
>gb|BM369582.2|BM369582 EBem07_SQ004_A13_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_A13 5', mRNA sequence
Length = 485
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 61 acccctgcgccggcgag 77
>gb|BM098658.2|BM098658 EBem08_SQ003_L07_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_L07 5', mRNA sequence
Length = 292
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 210 tcaccggcgcctcctccggcatcgg 234
>gb|BI780801.2|BI780801 EBes01_SQ002_E01_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_E01 5', mRNA sequence
Length = 405
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 146 agaggaaaatggaagag 162
>gb|BM099546.2|BM099546 EBes01_SQ003_I23_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ003_I23 5', mRNA sequence
Length = 414
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 144 agaggaaaatggaagag 160
>gb|BM441543.2|BM441543 EBma05_SQ004_M03_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ004_M03 5', mRNA sequence
Length = 273
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 10 agaggaaaatggaagag 26
>gb|BI780237.2|BI780237 EBma08_SQ001_M20_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ001_M20 5', mRNA sequence
Length = 628
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 158 tcaccggcgcctcctccggcatcgg 182
>gb|BM371644.2|BM371644 EBma08_SQ003_H13_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ003_H13 5', mRNA sequence
Length = 550
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 82 tcaccggcgcctcctccggcatcgg 106
>gb|BM101397.2|BM101397 EBpi01_SQ003_L19_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_L19 5', mRNA sequence
Length = 458
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 144 agaggaaaatggaagag 160
>gb|BI776527.2|BI776527 EBpi05_SQ001_M05_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_M05 5', mRNA sequence
Length = 420
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 156 agaggaaaatggaagag 172
>gb|BM097159.2|BM097159 EBpi07_SQ002_J11_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_J11 5', mRNA sequence
Length = 426
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 39 agaggaaaatggaagag 55
>gb|BM442784.2|BM442784 EBro02_SQ001_D13_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_D13 5', mRNA sequence
Length = 409
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 205 acccctgcgccggcgag 221
>gb|BM096737.2|BM096737 EBma07_SQ001_G20_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ001_G20 5', mRNA sequence
Length = 220
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 228 tgtcggcgctcgtcacc 244
|||||||||||||||||
Sbjct: 89 tgtcggcgctcgtcacc 73
>gb|BQ754532.1|BQ754532 EBed01_SQ003_B02_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ003_B02 5', mRNA sequence
Length = 409
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 134 agaggaaaatggaagag 150
>gb|BQ754821.1|BQ754821 EBed01_SQ003_O20_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ003_O20 5', mRNA sequence
Length = 295
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 20 agaggaaaatggaagag 36
>gb|BQ765545.1|BQ765545 EBro03_SQ007_A13_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_A13 5', mRNA sequence
Length = 515
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 154 agaggaaaatggaagag 170
>gb|BQ768403.1|BQ768403 EBro08_SQ011_I18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_I18 5', mRNA sequence
Length = 585
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 126 agaggaaaatggaagag 142
>gb|BU974867.1|BU974867 HB29F15r BC Hordeum vulgare subsp. vulgare cDNA clone HB29F15
5-PRIME, mRNA sequence
Length = 487
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 228 tgtcggcgctcgtcacc 244
|||||||||||||||||
Sbjct: 414 tgtcggcgctcgtcacc 430
>gb|BU978833.1|BU978833 HA14G13r HA Hordeum vulgare subsp. vulgare cDNA clone HA14G13
5-PRIME, mRNA sequence
Length = 202
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 162 agaggaaaatggaagag 178
>gb|BU980162.1|BU980162 HA18N17r HA Hordeum vulgare subsp. vulgare cDNA clone HA18N17
5-PRIME, mRNA sequence
Length = 507
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 179 agaggaaaatggaagag 195
>gb|BU981409.1|BU981409 HA23I16r HA Hordeum vulgare subsp. vulgare cDNA clone HA23I16
5-PRIME, mRNA sequence
Length = 384
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 170 agaggaaaatggaagag 186
>gb|BU983243.1|BU983243 HA29A12r HA Hordeum vulgare subsp. vulgare cDNA clone HA29A12
5-PRIME, mRNA sequence
Length = 516
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 163 agaggaaaatggaagag 179
>gb|BU983498.1|BU983498 HA29P01r HA Hordeum vulgare subsp. vulgare cDNA clone HA29P01
5-PRIME, mRNA sequence
Length = 426
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 164 agaggaaaatggaagag 180
>gb|BU985254.1|BU985254 HF06J10r HF Hordeum vulgare subsp. vulgare cDNA clone HF06J10
5-PRIME, mRNA sequence
Length = 437
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 179 agaggaaaatggaagag 195
>gb|BU990150.1|BU990150 HF24D18r HF Hordeum vulgare subsp. vulgare cDNA clone HF24D18
5-PRIME, mRNA sequence
Length = 464
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 112 agaggaaaatggaagag 128
>gb|BU994271.1|BU994271 HM06H01r HM Hordeum vulgare subsp. vulgare cDNA clone HM06H01
5-PRIME, mRNA sequence
Length = 428
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 170 agaggaaaatggaagag 186
>gb|BU998017.1|BU998017 HI09L20r HI Hordeum vulgare subsp. vulgare cDNA clone HI09L20
5-PRIME, mRNA sequence
Length = 514
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 579 atgtgaaccttgttgct 595
|||||||||||||||||
Sbjct: 372 atgtgaaccttgttgct 388
>gb|CA003194.1|CA003194 HS09L04r HS Hordeum vulgare subsp. vulgare cDNA clone HS09L04
5-PRIME, mRNA sequence
Length = 457
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 198 tcaccggcgcctcctccggcatcgg 222
>gb|CA003391.1|CA003391 HS14E21r HS Hordeum vulgare subsp. vulgare cDNA clone HS14E21
5-PRIME, mRNA sequence
Length = 419
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 198 tcaccggcgcctcctccggcatcgg 222
>gb|CA003752.1|CA003752 HS15H06r HS Hordeum vulgare subsp. vulgare cDNA clone HS15H06
5-PRIME, mRNA sequence
Length = 395
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 79 tcaccggcgcctcctccggcatcgg 103
>gb|CA007452.1|CA007452 HU08A07r HU Hordeum vulgare subsp. vulgare cDNA clone HU08A07
5-PRIME, mRNA sequence
Length = 518
Score = 34.2 bits (17), Expect = 6.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 240 tcaccggcggcgcctccggcatcgg 264
||||||||| | |||||||||||||
Sbjct: 102 tcaccggcgcctcctccggcatcgg 126
>gb|CA012142.1|CA012142 HT04J03r HT Hordeum vulgare subsp. vulgare cDNA clone HT04J03
5-PRIME, mRNA sequence
Length = 519
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 271 acccctgcgccggcgag 287
>gb|CA012414.1|CA012414 HT05F21r HT Hordeum vulgare subsp. vulgare cDNA clone HT05F21
5-PRIME, mRNA sequence
Length = 451
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 251 acccctgcgccggcgag 267
>gb|CA013363.1|CA013363 HT08D10r HT Hordeum vulgare subsp. vulgare cDNA clone HT08D10
5-PRIME, mRNA sequence
Length = 604
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 165 acccctgcgccggcgag 181
>gb|CA030123.1|CA030123 HX06C12r HX Hordeum vulgare subsp. vulgare cDNA clone HX06C12
5-PRIME, mRNA sequence
Length = 637
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 243 ccggcggcgcctccggc 259
|||||||||||||||||
Sbjct: 263 ccggcggcgcctccggc 247
>gb|CA032215.1|CA032215 HX12F23r HX Hordeum vulgare subsp. vulgare cDNA clone HX12F23
5-PRIME, mRNA sequence
Length = 556
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 181 agaggaaaatggaagag 197
>gb|CK124164.1|CK124164 BES1824107e10 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E107 5-PRIME, mRNA sequence
Length = 458
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagag 341
|||||||||||||||||
Sbjct: 183 agaggaaaatggaagag 199
>gb|AY137515.1| Hordeum vulgare subsp. vulgare hypersensitive-induced reaction
protein 4 (hir4) gene, complete cds
Length = 4830
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 1741 acccctgcgccggcgag 1757
>gb|AY137514.1| Hordeum vulgare subsp. vulgare hypersensitive-induced reaction
protein 4 mRNA, complete cds
Length = 1238
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 192 acccctgcgccggcgag 208
|||||||||||||||||
Sbjct: 249 acccctgcgccggcgag 265
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,947
Number of Sequences: 312970
Number of extensions: 91947
Number of successful extensions: 24929
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24774
Number of HSP's gapped (non-prelim): 150
length of query: 808
length of database: 175,134,539
effective HSP length: 19
effective length of query: 789
effective length of database: 169,188,109
effective search space: 133489418001
effective search space used: 133489418001
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)