BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS4f06.yg.3.1
(768 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF256838.2|BF256838 HVSMEf0011C11f Hordeum vulgare seedl... 50 1e-004
gb|BF628833.2|BF628833 HVSMEb0008L10f Hordeum vulgare seedl... 42 0.026
gb|BQ740187.1|BQ740187 HC111D03 HC Hordeum vulgare subsp. v... 38 0.41
>gb|BF256838.2|BF256838 HVSMEf0011C11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011C11f, mRNA sequence
Length = 582
Score = 50.1 bits (25), Expect = 1e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 433 taccctgccaccaatgccctcgattcccactaccttgccatccattccaactacgattcc 492
|||| |||||||||||||||| || || || || | || |||||||| | | ||| ||
Sbjct: 350 taccatgccaccaatgccctcaatcccaaccactattccgtccattccgatcatgatacc 409
Query: 493 aacaacaatccctaccattcc 513
|||||||||||||||||||||
Sbjct: 410 aacaacaatccctaccattcc 430
Score = 42.1 bits (21), Expect = 0.026
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 155 ttggacacagcagctgcgccagaggccac 183
|||||||| |||||||| |||||||||||
Sbjct: 78 ttggacacggcagctgcaccagaggccac 106
Score = 38.2 bits (19), Expect = 0.41
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 548 ccacaaaccaccagcccttgaag 570
||||||||||||||||| |||||
Sbjct: 471 ccacaaaccaccagcccatgaag 493
>gb|BF628833.2|BF628833 HVSMEb0008L10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008L10f, mRNA sequence
Length = 791
Score = 42.1 bits (21), Expect = 0.026
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 155 ttggacacagcagctgcgccagaggccac 183
|||||||| |||||||| |||||||||||
Sbjct: 125 ttggacacggcagctgcaccagaggccac 153
>gb|BQ740187.1|BQ740187 HC111D03 HC Hordeum vulgare subsp. vulgare cDNA clone HC111D03,
mRNA sequence
Length = 620
Score = 38.2 bits (19), Expect = 0.41
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 548 ccacaaaccaccagcccttgaag 570
||||||||||||||||| |||||
Sbjct: 303 ccacaaaccaccagcccatgaag 325
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,420
Number of Sequences: 312970
Number of extensions: 73420
Number of successful extensions: 19916
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19901
Number of HSP's gapped (non-prelim): 13
length of query: 768
length of database: 175,134,539
effective HSP length: 19
effective length of query: 749
effective length of database: 169,188,109
effective search space: 126721893641
effective search space used: 126721893641
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)