BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS2h09.yg.3.5
(1992 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF624687.2|BF624687 HVSMEa0017H14f Hordeum vulgare seedl... 212 3e-053
gb|BJ462569.1|BJ462569 BJ462569 K. Sato unpublished cDNA li... 212 3e-053
gb|BJ467643.1|BJ467643 BJ467643 K. Sato unpublished cDNA li... 210 1e-052
gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedl... 125 6e-027
gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedl... 117 1e-024
gb|BF618630.2|BF618630 HVSMEc0006O07f Hordeum vulgare seedl... 86 5e-015
gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. v... 82 8e-014
gb|BF625715.2|BF625715 HVSMEa0013F16f Hordeum vulgare seedl... 56 5e-006
gb|AJ434757.1|AJ434757 AJ434757 S00002 Hordeum vulgare subs... 56 5e-006
gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike... 52 7e-005
gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. v... 52 7e-005
gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachi... 50 3e-004
gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachi... 50 3e-004
gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, sal... 50 3e-004
gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. v... 50 3e-004
emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA 50 3e-004
gb|BF629071.2|BF629071 HVSMEb0009M08f Hordeum vulgare seedl... 38 1.1
gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachi... 38 1.1
gb|BQ464174.1|BQ464174 HF01I21T HF Hordeum vulgare subsp. v... 38 1.1
gb|BU986247.1|BU986247 HF11C12r HF Hordeum vulgare subsp. v... 38 1.1
gb|CA012115.1|CA012115 HT04H21r HT Hordeum vulgare subsp. v... 38 1.1
gb|CA022106.1|CA022106 HZ42C22r HZ Hordeum vulgare subsp. v... 38 1.1
emb|X70881.1|HVMYB3G H.vulgare myb3 gene 38 1.1
gb|BG369102.2|BG369102 HVSMEi0021L15f Hordeum vulgare 20 DA... 36 4.3
gb|BG415047.2|BG415047 HVSMEk0004N16f Hordeum vulgare testa... 36 4.3
gb|BQ460434.1|BQ460434 HA09K10r HA Hordeum vulgare subsp. v... 36 4.3
gb|BM371860.2|BM371860 EBma08_SQ004_D12_R maternal, 28 DPA,... 36 4.3
gb|BU975173.1|BU975173 HB30F02r BC Hordeum vulgare subsp. v... 36 4.3
gb|BU975705.1|BU975705 HB32A20r BC Hordeum vulgare subsp. v... 36 4.3
gb|BU982347.1|BU982347 HA26E05r HA Hordeum vulgare subsp. v... 36 4.3
gb|BU996156.1|BU996156 HM12K12r HM Hordeum vulgare subsp. v... 36 4.3
gb|CB875180.1|CB875180 HX07I07w HX Hordeum vulgare subsp. v... 36 4.3
gb|CB882771.1|CB882771 HL02M21w HL Hordeum vulgare subsp. v... 36 4.3
gb|CV064071.1|CV064071 BNEL97c10 Barley EST endosperm libra... 36 4.3
gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 36 4.3
>gb|BF624687.2|BF624687 HVSMEa0017H14f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0017H14f, mRNA sequence
Length = 876
Score = 212 bits (107), Expect = 3e-053
Identities = 203/234 (86%), Gaps = 2/234 (0%)
Strand = Plus / Plus
Query: 1350 accacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagagagc 1409
||||||| ||||||||||||||||| | || || |||||||||||||| |||||||||
Sbjct: 132 accacagcgatgcagaaccagagccagtcactatacgatgatgtgatcaaagcagagagc 191
Query: 1410 caattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaacag 1469
|| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 192 cagttcaacatggaggggatatgtgcttcttggttccagaatcagcagccgcagcaacag 251
Query: 1470 ctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttgag 1529
||||| | |||| ||||||||||||| || ||||| |||||||||| | |||||||||
Sbjct: 252 ctgcaagcagcatcagacatgtatgataaagacttacaaagaatgcccttgtcttttgag 311
Query: 1530 aatatctaggcattatgttccacc--acatggaacagagcagatcagaagaagc 1581
||||||||| | ||||||| || ||||||| ||||||||||||| ||||||
Sbjct: 312 catatctaggtactatgttctgccatacatggagcagagcagatcagcagaagc 365
Score = 63.9 bits (32), Expect = 2e-008
Identities = 82/99 (82%), Gaps = 6/99 (6%)
Strand = Plus / Plus
Query: 1243 caattctggagaacagtgtcttcccatggacagaca------ttggacaagaaaaagata 1296
||||||||||||||||||| |||||||||||||| | |||| |||||||||||||
Sbjct: 7 caattctggagaacagtgtattcccatggacagatatcggagttgggcaagaaaaagata 66
Query: 1297 caagggctcacctagtagcggaacttaagtggcctgact 1335
| || | ||| |||| | |||||| |||||||||||||
Sbjct: 67 ccagagttcagttagtggaggaactcaagtggcctgact 105
>gb|BJ462569.1|BJ462569 BJ462569 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29d04 5', mRNA sequence
Length = 642
Score = 212 bits (107), Expect = 3e-053
Identities = 203/234 (86%), Gaps = 2/234 (0%)
Strand = Plus / Plus
Query: 1350 accacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagagagc 1409
||||||| ||||||||||||||||| | || || |||||||||||||| |||||||||
Sbjct: 203 accacagcgatgcagaaccagagccagtcactatacgatgatgtgatcaaagcagagagc 262
Query: 1410 caattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaacag 1469
|| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 263 cagttcaacatggaggggatatgtgcttcttggttccagaatcagcagccgcagcaacag 322
Query: 1470 ctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttgag 1529
||||| | |||| ||||||||||||| || ||||| |||||||||| | |||||||||
Sbjct: 323 ctgcaagcagcatcagacatgtatgataaagacttacaaagaatgcccttgtcttttgag 382
Query: 1530 aatatctaggcattatgttccacc--acatggaacagagcagatcagaagaagc 1581
||||||||| | ||||||| || ||||||| ||||||||||||| ||||||
Sbjct: 383 catatctaggtactatgttctgccatacatggagcagagcagatcagcagaagc 436
Score = 107 bits (54), Expect = 1e-021
Identities = 143/173 (82%), Gaps = 6/173 (3%)
Strand = Plus / Plus
Query: 1169 taatcctagcagcagtagcagtactgggagcagagggagcaacagtatgggatttgaacc 1228
||||||||||||||| | || || |||||||| || |||||||| ||||| || || ||
Sbjct: 4 taatcctagcagcagcggtagcaccgggagcagcggaagcaacagcatggggttcgagcc 63
Query: 1229 acagagcacgagcacaattctggagaacagtgtcttcccatggacagaca------ttgg 1282
||||||||||| | ||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 64 acagagcacgaactcaattctggagaacagtgtattcccatggacagatatcggagttgg 123
Query: 1283 acaagaaaaagatacaagggctcacctagtagcggaacttaagtggcctgact 1335
|||||||||||||| || | ||| |||| | |||||| |||||||||||||
Sbjct: 124 gcaagaaaaagataccagagttcagttagtggaggaactcaagtggcctgact 176
>gb|BJ467643.1|BJ467643 BJ467643 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29d04 3', mRNA sequence
Length = 714
Score = 210 bits (106), Expect = 1e-052
Identities = 196/225 (87%), Gaps = 2/225 (0%)
Strand = Plus / Minus
Query: 1359 atgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagagagccaattcaac 1418
||||||||||||||||| | || || |||||||||||||| ||||||||||| ||||||
Sbjct: 711 atgcagaaccagagccagtcactatacgatgatgtgatcaaagcagagagccagttcaac 652
Query: 1419 atagaagggatatgtgcttcttggttccagaatcagcagccacagcaacagctgcaggta 1478
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct: 651 atggaggggatatgtgcttcttggttccagaatcagcagccgcagcaacagctgcaagca 592
Query: 1479 gcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttgagaatatctag 1538
||| ||||||||||||| || ||||| |||||||||| | ||||||||| ||||||||
Sbjct: 591 gcatcagacatgtatgataaagacttacaaagaatgcccttgtcttttgagcatatctag 532
Query: 1539 gcattatgttccacc--acatggaacagagcagatcagaagaagc 1581
| | ||||||| || ||||||| ||||||||||||| ||||||
Sbjct: 531 gtactatgttctgccatacatggagcagagcagatcagcagaagc 487
Score = 56.0 bits (28), Expect = 5e-006
Identities = 70/82 (85%), Gaps = 4/82 (4%)
Strand = Plus / Minus
Query: 1769 cctttcctttctcttgaaaattgatgttttccttctgtacacgactg---aacttttgca 1825
|||||| || ||||| ||||||| ||||||| ||||||||||||| | |||||||| |
Sbjct: 299 cctttctttcctcttcaaaattgttgttttc-ttctgtacacgacagctcaacttttgga 241
Query: 1826 tatttgagtttttgttctctct 1847
|| |||||||||||||| ||||
Sbjct: 240 tacttgagtttttgttcactct 219
Score = 50.1 bits (25), Expect = 3e-004
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 1915 agtagccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgt 1973
|||||||||||||||| |||| ||||||||||| || || | |||||| ||||||| |
Sbjct: 147 agtagccccaaacttttcaacagctgccatgcacgtagattcgaattaaatattgcaact 88
Query: 1974 tgtattttt 1982
|||||||||
Sbjct: 87 tgtattttt 79
>gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002G15f, mRNA sequence
Length = 853
Score = 125 bits (63), Expect = 6e-027
Identities = 242/302 (80%)
Strand = Plus / Plus
Query: 303 ctctggtcccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggc 362
|||||||| || |||||||| ||||| || ||||| ||||| | ||| | ||| | |||
Sbjct: 239 ctctggtcgccggaggaggacgagaagctgatgaaccacattgccaagtacggcaacggc 298
Query: 363 tgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctg 422
||||||||||| || ||||| | || || ||| | |||||||| ||||| || ||||||
Sbjct: 299 tgctggagctccgtccccaagattgcaggccttgagaggtgcgggaagagctgcaggctg 358
Query: 423 aggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagacgaagaa 482
|||||||||||||| |||||||| ||||||||||| || || ||| | || || || ||
Sbjct: 359 aggtggataaactacctgaggccggacctcaagaggggcgccttctcgcaggaggaggag 418
Query: 483 gacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcag 542
|||||||||||| | || ||| | ||||||| |||| ||||||||| || || ||||||
Sbjct: 419 gacctcatcatccacctncactccatcctcggcaacaagtggtctcagatcgccgcgcag 478
Query: 543 ctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaag 602
||||| || | || || || ||| ||||||| | |||||||| | |||||||||||||
Sbjct: 479 ctgcccggccgcaccgacaacgaggtcaagaacttctggaactccttcatcaagaagaag 538
Query: 603 ct 604
||
Sbjct: 539 ct 540
>gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017F20f, mRNA sequence
Length = 786
Score = 117 bits (59), Expect = 1e-024
Identities = 243/303 (80%), Gaps = 1/303 (0%)
Strand = Plus / Plus
Query: 303 ctctggtcccctgaggaggatgagaaa-ctcatgaatcacataacaaagcatggccatgg 361
|||||||| || |||||||| |||||| || ||||| ||||| | ||| | ||| | ||
Sbjct: 158 ctctggtcgccggaggaggacgagaaagctgatgaaccacattgccaagtacggcaacgg 217
Query: 362 ctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggct 421
|||||||||||| || ||||| | || || ||| | |||||||| ||||| || |||||
Sbjct: 218 ctgctggagctccgtccccaagattgcaggccttgagaggtgcgggaagagctgcaggct 277
Query: 422 gaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagacgaaga 481
||||||||||||||| |||||||| ||||||||||| || || ||| | || || || ||
Sbjct: 278 gaggtggataaactacctgaggccggacctcaagaggggcgccttctcgcaggaggagga 337
Query: 482 agacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgca 541
|||||||||||| | || ||| | ||||||| |||| ||||||||| || || |||||
Sbjct: 338 ggacctcatcatccacctccactccatcctcggcaacaagtggtctcagatcgccgcgca 397
Query: 542 gctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 601
|||||| || | || || || ||| ||||||| | |||||||| | ||||||||||||
Sbjct: 398 gctgcccggccgcaccgacaacgaggtcaagaacttctggaactccttcatcaagaagaa 457
Query: 602 gct 604
|||
Sbjct: 458 gct 460
>gb|BF618630.2|BF618630 HVSMEc0006O07f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0006O07f, mRNA sequence
Length = 556
Score = 85.7 bits (43), Expect = 5e-015
Identities = 240/303 (79%), Gaps = 2/303 (0%)
Strand = Plus / Plus
Query: 303 ctctggtcccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggc 362
|||||||| || |||||||| |||| || ||||| ||||| | ||| | ||| | |||
Sbjct: 162 ctctggtcgccggaggaggactagaagctgatgaaccacattgccaagtacggcaacggc 221
Query: 363 tgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctg 422
||||||||||| || ||||| | || || ||| | |||||||| ||||| || ||||||
Sbjct: 222 tgctggagctccgtccccaagattgcaggccttgagaggtgcgggaagagctgcaggctg 281
Query: 423 aggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagacgaagaa 482
|||||||||||||| |||||||| ||||||||||| || || ||| | || || || ||
Sbjct: 282 aggtggataaactacctgaggccggacctcaagaggggcgccttctcgcaggaggaggag 341
Query: 483 gacctcatcatcgagctgcacgctgtcctcgggaaca-ggtggtctcaaattgcagcgca 541
||||||||||| | || ||| | ||||| | |||| |||||||||| || || |||||
Sbjct: 342 gacctcatcattcacctccactccatcctccgcaacaaggtggtctcagatcgccgcgca 401
Query: 542 gctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 601
|||||| ||| | || || || ||| ||||||| || | |||||| | |||||||||||
Sbjct: 402 gctgcccgggcgtaccgacaacgaggtcaagaa-cttttgaactccttaatcaagaagaa 460
Query: 602 gct 604
|||
Sbjct: 461 gct 463
>gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. vulgare cDNA clone HI10A14
5-PRIME, mRNA sequence
Length = 580
Score = 81.8 bits (41), Expect = 8e-014
Identities = 149/185 (80%)
Strand = Plus / Plus
Query: 273 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 332
|||||| ||||||||||| |||| | ||| || ||||| || ||||| || ||||| |||
Sbjct: 76 tgctgcaacaagcagaaggtgaggaggggcctgtggtcaccagaggaagacgagaagctc 135
Query: 333 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaaactcgctggg 392
| || |||| || |||||||||||||||||||||||| || || | || || |||
Sbjct: 136 gtcaagtacatcaccgcgcatggccatggctgctggagctcggtcccaagacaagccggg 195
Query: 393 cttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctc 452
|| || ||||| || ||||| || |||||| ||||||| ||||| |||||||| ||||||
Sbjct: 196 ctgcagaggtgtggcaagagctgcaggctgcggtggatcaactacctgaggccggacctc 255
Query: 453 aagag 457
|||||
Sbjct: 256 aagag 260
>gb|BF625715.2|BF625715 HVSMEa0013F16f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0013F16f, mRNA sequence
Length = 522
Score = 56.0 bits (28), Expect = 5e-006
Identities = 70/82 (85%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 1769 cctttcctttctcttgaaaattgatgttttccttctgtacacgactg---aacttttgca 1825
|||||| || ||||| ||||||| ||||||| ||||||||||||| | |||||||| |
Sbjct: 251 cctttctttcctcttcaaaattgttgttttc-ttctgtacacgacagctcaacttttgga 309
Query: 1826 tatttgagtttttgttctctct 1847
|| |||||||||||||| ||||
Sbjct: 310 tacttgagtttttgttcactct 331
Score = 50.1 bits (25), Expect = 3e-004
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1915 agtagccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgt 1973
|||||||||||||||| |||| ||||||||||| || || | |||||| ||||||| |
Sbjct: 403 agtagccccaaacttttcaacagctgccatgcacgtagattcgaattaaatattgcaact 462
Query: 1974 tgtattttt 1982
|||||||||
Sbjct: 463 tgtattttt 471
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/63 (85%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1521 tcttttgagaatatctaggcattatgttccacca--catggaacagagcagatcagaaga 1578
||||||||| ||||||||| | ||||||| ||| |||||| ||||||||||||| |||
Sbjct: 1 tcttttgagcatatctaggtactatgttctgccatacatggagcagagcagatcagcaga 60
Query: 1579 agc 1581
|||
Sbjct: 61 agc 63
>gb|AJ434757.1|AJ434757 AJ434757 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200054B09F2, mRNA sequence
Length = 502
Score = 56.0 bits (28), Expect = 5e-006
Identities = 70/82 (85%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 1769 cctttcctttctcttgaaaattgatgttttccttctgtacacgactg---aacttttgca 1825
|||||| || ||||| ||||||| ||||||| ||||||||||||| | |||||||| |
Sbjct: 175 cctttctttcctcttcaaaattgttgttttc-ttctgtacacgacagctcaacttttgga 233
Query: 1826 tatttgagtttttgttctctct 1847
|| |||||||||||||| ||||
Sbjct: 234 tacttgagtttttgttcactct 255
Score = 50.1 bits (25), Expect = 3e-004
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1915 agtagccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgt 1973
|||||||||||||||| |||| ||||||||||| || || | |||||| ||||||| |
Sbjct: 327 agtagccccaaacttttcaacagctgccatgcacgtagattcgaattaaatattgcaact 386
Query: 1974 tgtattttt 1982
|||||||||
Sbjct: 387 tgtattttt 395
>gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002J21f, mRNA sequence
Length = 845
Score = 52.0 bits (26), Expect = 7e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 579 tggaactcgtgcatcaagaagaagct 604
||||||||||||||||||||||||||
Sbjct: 366 tggaactcgtgcatcaagaagaagct 391
>gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. vulgare cDNA clone HI05J08
5-PRIME, mRNA sequence
Length = 436
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || |||||||| |||||
Sbjct: 132 agcagaagctgcgcaaggggctctggtctcccgaggaggacgagaa 177
Score = 44.1 bits (22), Expect = 0.018
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 363 tgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctg 422
||||||||||| || ||||| ||||| || || || |||||||| ||||| || |||||
Sbjct: 212 tgctggagctccgtgcccaagctcgccggtctgcagaggtgcggcaagagctgccggctg 271
Query: 423 aggtggataaacta 436
||||||| |||||
Sbjct: 272 cggtggatcaacta 285
>gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013M24f, mRNA sequence
Length = 471
Score = 50.1 bits (25), Expect = 3e-004
Identities = 85/105 (80%)
Strand = Plus / Plus
Query: 351 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 410
|||||| | ||||||||||| || | |||||| ||| ||||| | ||||||| |||
Sbjct: 256 catggcgagggctgctggaggtccctccccaaagccgcagggctgctgcggtgcgggaag 315
Query: 411 agttgtaggctgaggtggataaactatctgaggccagacctcaag 455
|| || |||||| ||||||| ||||| |||||||| |||||||||
Sbjct: 316 agctgcaggctgcggtggatcaactacctgaggccggacctcaag 360
>gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E14f, mRNA sequence
Length = 635
Score = 50.1 bits (25), Expect = 3e-004
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 508 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 567
||||||| |||||||||||||| || || |||| ||||| || |||| || || ||||
Sbjct: 336 tcctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgaga 395
Query: 568 tcaagaatctatggaactcgtgcatcaagaagaagct 604
||||||| | |||||| |||||||||||||||||
Sbjct: 396 tcaagaacttctggaacagctgcatcaagaagaagct 432
>gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_O04 5', mRNA sequence
Length = 383
Score = 50.1 bits (25), Expect = 3e-004
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 508 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 567
||||||| |||||||||||||| || || |||| ||||| || |||| || || ||||
Sbjct: 249 tcctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgaga 308
Query: 568 tcaagaatctatggaactcgtgcatcaagaagaagct 604
||||||| | |||||| |||||||||||||||||
Sbjct: 309 tcaagaacttctggaacagctgcatcaagaagaagct 345
>gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. vulgare cDNA clone HM13L14
5-PRIME, mRNA sequence
Length = 648
Score = 50.1 bits (25), Expect = 3e-004
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 508 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 567
||||||| |||||||||||||| || || |||| ||||| || |||| || || ||||
Sbjct: 345 tcctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgaga 404
Query: 568 tcaagaatctatggaactcgtgcatcaagaagaagct 604
||||||| | |||||| |||||||||||||||||
Sbjct: 405 tcaagaacttctggaacagctgcatcaagaagaagct 441
>emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA
Length = 1270
Score = 50.1 bits (25), Expect = 3e-004
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 508 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 567
||||||| |||||||||||||| || || |||| ||||| || |||| || || ||||
Sbjct: 321 tcctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgaga 380
Query: 568 tcaagaatctatggaactcgtgcatcaagaagaagct 604
||||||| | |||||| |||||||||||||||||
Sbjct: 381 tcaagaacttctggaacagctgcatcaagaagaagct 417
>gb|BF629071.2|BF629071 HVSMEb0009M08f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0009M08f, mRNA sequence
Length = 838
Score = 38.2 bits (19), Expect = 1.1
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1285 aagaaaaagatacaagggctcac 1307
||||||||||||||||| |||||
Sbjct: 462 aagaaaaagatacaaggactcac 440
>gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M09f, mRNA sequence
Length = 656
Score = 38.2 bits (19), Expect = 1.1
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 488 catcatcgagctgcacgctgtcctcgggaacaggtggtc 526
||||||| |||||||| | ||| |||| |||||||||||
Sbjct: 243 catcatcaagctgcactccgtcgtcggcaacaggtggtc 281
>gb|BQ464174.1|BQ464174 HF01I21T HF Hordeum vulgare subsp. vulgare cDNA clone HF01I21
5-PRIME, mRNA sequence
Length = 680
Score = 38.2 bits (19), Expect = 1.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1214 tatgggatttgaaccacag 1232
|||||||||||||||||||
Sbjct: 429 tatgggatttgaaccacag 447
>gb|BU986247.1|BU986247 HF11C12r HF Hordeum vulgare subsp. vulgare cDNA clone HF11C12
5-PRIME, mRNA sequence
Length = 625
Score = 38.2 bits (19), Expect = 1.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1214 tatgggatttgaaccacag 1232
|||||||||||||||||||
Sbjct: 392 tatgggatttgaaccacag 410
>gb|CA012115.1|CA012115 HT04H21r HT Hordeum vulgare subsp. vulgare cDNA clone HT04H21
5-PRIME, mRNA sequence
Length = 479
Score = 38.2 bits (19), Expect = 1.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1214 tatgggatttgaaccacag 1232
|||||||||||||||||||
Sbjct: 416 tatgggatttgaaccacag 434
>gb|CA022106.1|CA022106 HZ42C22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42C22
5-PRIME, mRNA sequence
Length = 530
Score = 38.2 bits (19), Expect = 1.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 319 aggatgagaaactcatgaa 337
|||||||||||||||||||
Sbjct: 394 aggatgagaaactcatgaa 376
>emb|X70881.1|HVMYB3G H.vulgare myb3 gene
Length = 3241
Score = 38.2 bits (19), Expect = 1.1
Identities = 70/87 (80%)
Strand = Plus / Plus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
|||||||||||| || || |||| ||||| || |||| || || ||||||||||| |
Sbjct: 1485 caggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgagatcaagaactt 1544
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||| |||||||||||||||||
Sbjct: 1545 ctggaacagctgcatcaagaagaagct 1571
>gb|BG369102.2|BG369102 HVSMEi0021L15f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021L15f, mRNA sequence
Length = 877
Score = 36.2 bits (18), Expect = 4.3
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 541 agctgccagggaggactgataatgagatcaagaa 574
||||||||||| | || || ||||||||||||||
Sbjct: 583 agctgccagggcgtaccgacaatgagatcaagaa 616
>gb|BG415047.2|BG415047 HVSMEk0004N16f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0004N16f, mRNA sequence
Length = 546
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1882 aaaaatgcatgtgtcggtagct 1903
|||| |||||||||||||||||
Sbjct: 340 aaaactgcatgtgtcggtagct 361
>gb|BQ460434.1|BQ460434 HA09K10r HA Hordeum vulgare subsp. vulgare cDNA clone HA09K10
5-PRIME, mRNA sequence
Length = 613
Score = 36.2 bits (18), Expect = 4.3
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 541 agctgccagggaggactgataatgagatcaagaa 574
||||||||||| | || || ||||||||||||||
Sbjct: 396 agctgccagggcgtaccgacaatgagatcaagaa 429
>gb|BM371860.2|BM371860 EBma08_SQ004_D12_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_D12 5', mRNA sequence
Length = 594
Score = 36.2 bits (18), Expect = 4.3
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 541 agctgccagggaggactgataatgagatcaagaa 574
||||||||||| | || || ||||||||||||||
Sbjct: 440 agctgccagggcgtaccgacaatgagatcaagaa 473
>gb|BU975173.1|BU975173 HB30F02r BC Hordeum vulgare subsp. vulgare cDNA clone HB30F02
5-PRIME, mRNA sequence
Length = 425
Score = 36.2 bits (18), Expect = 4.3
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 541 agctgccagggaggactgataatgagatcaagaa 574
||||||||||| | || || ||||||||||||||
Sbjct: 258 agctgccagggcgtaccgacaatgagatcaagaa 291
>gb|BU975705.1|BU975705 HB32A20r BC Hordeum vulgare subsp. vulgare cDNA clone HB32A20
5-PRIME, mRNA sequence
Length = 574
Score = 36.2 bits (18), Expect = 4.3
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 541 agctgccagggaggactgataatgagatcaagaa 574
||||||||||| | || || ||||||||||||||
Sbjct: 450 agctgccagggcgtaccgacaatgagatcaagaa 483
>gb|BU982347.1|BU982347 HA26E05r HA Hordeum vulgare subsp. vulgare cDNA clone HA26E05
5-PRIME, mRNA sequence
Length = 551
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 596 gaagaagctgaggcagaa 613
||||||||||||||||||
Sbjct: 343 gaagaagctgaggcagaa 360
>gb|BU996156.1|BU996156 HM12K12r HM Hordeum vulgare subsp. vulgare cDNA clone HM12K12
5-PRIME, mRNA sequence
Length = 641
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 596 gaagaagctgaggcagaa 613
||||||||||||||||||
Sbjct: 618 gaagaagctgaggcagaa 635
>gb|CB875180.1|CB875180 HX07I07w HX Hordeum vulgare subsp. vulgare cDNA clone HX07I07
3-PRIME, mRNA sequence
Length = 568
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 596 gaagaagctgaggcagaa 613
||||||||||||||||||
Sbjct: 267 gaagaagctgaggcagaa 250
>gb|CB882771.1|CB882771 HL02M21w HL Hordeum vulgare subsp. vulgare cDNA clone HL02M21
3-PRIME, mRNA sequence
Length = 533
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1483 cagacatgtatgacaagg 1500
||||||||||||||||||
Sbjct: 39 cagacatgtatgacaagg 56
>gb|CV064071.1|CV064071 BNEL97c10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL97c10 5' similar to expressed
protein, mRNA sequence
Length = 648
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 596 gaagaagctgaggcagaa 613
||||||||||||||||||
Sbjct: 616 gaagaagctgaggcagaa 633
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
Length = 261265
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1173 cctagcagcagtagcagt 1190
||||||||||||||||||
Sbjct: 117874 cctagcagcagtagcagt 117891
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1173 cctagcagcagtagcagt 1190
||||||||||||||||||
Sbjct: 78161 cctagcagcagtagcagt 78178
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 209,099
Number of Sequences: 312970
Number of extensions: 209099
Number of successful extensions: 53600
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 53424
Number of HSP's gapped (non-prelim): 159
length of query: 1992
length of database: 175,134,539
effective HSP length: 20
effective length of query: 1972
effective length of database: 168,875,139
effective search space: 333021774108
effective search space used: 333021774108
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)