BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAR2a06.yg.3.1
         (612 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AL500793.1|AL500793  AL500793 Hordeum vulgare Barke roots...    34   5.1  
gb|BF621611.1|BF621611  HVSMEa0011J15f Hordeum vulgare seedl...    34   5.1  
gb|BE519834.1|BE519834  HV_CEb0021G11f Hordeum vulgare seedl...    34   5.1  
gb|BU988902.1|BU988902  HF19B15r HF Hordeum vulgare subsp. v...    34   5.1  
gb|BU988960.1|BU988960  HF19E15r HF Hordeum vulgare subsp. v...    34   5.1  

>gb|AL500793.1|AL500793 AL500793 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
           cDNA clone HW01O14u 3', mRNA sequence
          Length = 654

 Score = 34.2 bits (17), Expect = 5.1
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 514 cccaaaggggctcaaga 530
           |||||||||||||||||
Sbjct: 508 cccaaaggggctcaaga 524



>gb|BF621611.1|BF621611 HVSMEa0011J15f Hordeum vulgare seedling shoot EST library
           HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
           cDNA clone HVSMEa0011J15f, mRNA sequence
          Length = 868

 Score = 34.2 bits (17), Expect = 5.1
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 142 aaaaggggcaggatcta 158
           |||||||||||||||||
Sbjct: 442 aaaaggggcaggatcta 458



>gb|BE519834.1|BE519834 HV_CEb0021G11f Hordeum vulgare seedling green leaf EST library
           HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
           vulgare cDNA clone HV_CEb0021G11f, mRNA sequence
          Length = 627

 Score = 34.2 bits (17), Expect = 5.1
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 71  tgatgctgccctacgtg 87
           |||||||||||||||||
Sbjct: 542 tgatgctgccctacgtg 558



>gb|BU988902.1|BU988902 HF19B15r HF Hordeum vulgare subsp. vulgare cDNA clone HF19B15
           5-PRIME, mRNA sequence
          Length = 269

 Score = 34.2 bits (17), Expect = 5.1
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 596 tgctccaccgagaggac 612
           |||||||||||||||||
Sbjct: 224 tgctccaccgagaggac 240



>gb|BU988960.1|BU988960 HF19E15r HF Hordeum vulgare subsp. vulgare cDNA clone HF19E15
           5-PRIME, mRNA sequence
          Length = 538

 Score = 34.2 bits (17), Expect = 5.1
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 596 tgctccaccgagaggac 612
           |||||||||||||||||
Sbjct: 225 tgctccaccgagaggac 241



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  May 2, 2006  2:38 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,560
Number of Sequences: 312970
Number of extensions: 48560
Number of successful extensions: 11281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11276
Number of HSP's gapped (non-prelim): 5
length of query: 612
length of database: 175,134,539
effective HSP length: 19
effective length of query: 593
effective length of database: 169,188,109
effective search space: 100328548637
effective search space used: 100328548637
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)