BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAN11a10.yg.3.1
(1341 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ452404.1|BJ452404 BJ452404 K. Sato unpublished cDNA li... 313 8e-084
gb|BJ456648.1|BJ456648 BJ456648 K. Sato unpublished cDNA li... 313 8e-084
gb|BU996561.1|BU996561 HM14A03r HM Hordeum vulgare subsp. v... 297 5e-079
gb|CB879915.1|CB879915 HP10M23T HP Hordeum vulgare subsp. v... 297 5e-079
emb|Y13848.1|HVAGALACB Hordeum vulgare mRNA for alpha-galac... 297 5e-079
gb|AV910726.1|AV910726 AV910726 K. Sato unpublished cDNA li... 291 3e-077
gb|CV055576.1|CV055576 BNEL121b6 Barley EST endosperm libra... 291 3e-077
gb|AV928373.1|AV928373 AV928373 K. Sato unpublished cDNA li... 287 5e-076
gb|AL506531.1|AL506531 AL506531 Hordeum vulgare Barke devel... 285 2e-075
gb|AV923193.1|AV923193 AV923193 K. Sato unpublished cDNA li... 283 7e-075
gb|BJ450517.1|BJ450517 BJ450517 K. Sato unpublished cDNA li... 283 7e-075
gb|BJ457941.1|BJ457941 BJ457941 K. Sato unpublished cDNA li... 278 5e-073
gb|BU967447.1|BU967447 HB04F13r BC Hordeum vulgare subsp. v... 278 5e-073
gb|AV927017.1|AV927017 AV927017 K. Sato unpublished cDNA li... 252 3e-065
gb|AV931851.1|AV931851 AV931851 K. Sato unpublished cDNA li... 252 3e-065
gb|BU989055.1|BU989055 HF19K04r HF Hordeum vulgare subsp. v... 248 4e-064
gb|BI947688.1|BI947688 HVSMEl0006H04f Hordeum vulgare spike... 238 4e-061
gb|AV926578.1|AV926578 AV926578 K. Sato unpublished cDNA li... 238 4e-061
gb|AV912236.1|AV912236 AV912236 K. Sato unpublished cDNA li... 204 5e-051
gb|BJ459953.1|BJ459953 BJ459953 K. Sato unpublished cDNA li... 200 9e-050
gb|BF260752.2|BF260752 HVSMEf0022N15f Hordeum vulgare seedl... 194 5e-048
gb|BU996226.1|BU996226 HM12O16r HM Hordeum vulgare subsp. v... 194 5e-048
gb|BI950939.1|BI950939 HVSMEl0023L17f Hordeum vulgare spike... 190 8e-047
gb|AV931470.1|AV931470 AV931470 K. Sato unpublished cDNA li... 188 3e-046
gb|BI952567.1|BI952567 HVSMEm0007A03f Hordeum vulgare green... 176 1e-042
gb|CA023878.1|CA023878 HZ47K23r HZ Hordeum vulgare subsp. v... 161 7e-038
gb|BI947500.1|BI947500 HVSMEl0005L02f Hordeum vulgare spike... 159 3e-037
gb|BU972208.1|BU972208 HB20P08r BC Hordeum vulgare subsp. v... 149 3e-034
gb|AL510019.1|AL510019 AL510019 Hordeum vulgare Barke devel... 133 2e-029
gb|BI781084.2|BI781084 EBma03_SQ001_F24_R maternal, 8 DPA, ... 129 3e-028
gb|AJ462496.1|AJ462496 AJ462496 S00002 Hordeum vulgare subs... 119 2e-025
gb|AJ462497.1|AJ462497 AJ462497 S00002 Hordeum vulgare subs... 119 2e-025
gb|BI949365.1|BI949365 HVSMEl0013I21f Hordeum vulgare spike... 113 2e-023
gb|AV929822.1|AV929822 AV929822 K. Sato unpublished cDNA li... 113 2e-023
gb|AV929823.1|AV929823 AV929823 K. Sato unpublished cDNA li... 113 2e-023
gb|CD663750.1|CD663750 UCRHV18_06cb01_b1 Drought-stressed D... 113 2e-023
gb|CA021843.1|CA021843 HZ41E20r HZ Hordeum vulgare subsp. v... 107 9e-022
gb|BU983231.1|BU983231 HA28P16r HA Hordeum vulgare subsp. v... 101 6e-020
gb|CK122872.1|CK122872 BES1824106g24 BES1824 Hordeum vulgar... 96 4e-018
gb|AV924730.1|AV924730 AV924730 K. Sato unpublished cDNA li... 88 9e-016
gb|AL509965.1|AL509965 AL509965 Hordeum vulgare Barke devel... 86 3e-015
gb|AV924729.1|AV924729 AV924729 K. Sato unpublished cDNA li... 84 1e-014
gb|BQ765587.1|BQ765587 EBro03_SQ007_I16_R root, 3 week, wat... 72 5e-011
gb|BF266542.2|BF266542 HV_CEa0015G15f Hordeum vulgare seedl... 68 8e-010
gb|BF263757.2|BF263757 HV_CEa0007J08f Hordeum vulgare seedl... 66 3e-009
gb|CB879315.1|CB879315 HP11L15T HP Hordeum vulgare subsp. v... 66 3e-009
gb|CB879919.1|CB879919 HP11C13T HP Hordeum vulgare subsp. v... 66 3e-009
gb|BF253410.3|BF253410 HVSMEf0001F14f Hordeum vulgare seedl... 64 1e-008
gb|AJ435128.1|AJ435128 AJ435128 S00002 Hordeum vulgare subs... 64 1e-008
gb|BJ458546.1|BJ458546 BJ458546 K. Sato unpublished cDNA li... 64 1e-008
gb|CD663438.1|CD663438 UCRHV18_05bh12_b1 Drought-stressed D... 64 1e-008
gb|CD662954.1|CD662954 UCRHV18_03db02_b1 Drought-stressed D... 60 2e-007
gb|CB878352.1|CB878352 HP08D19T HP Hordeum vulgare subsp. v... 54 1e-005
gb|BF263175.2|BF263175 HV_CEa0006A14f Hordeum vulgare seedl... 44 0.012
emb|Y13849.1|HVAGALACA Hordeum vulgare mRNA for alpha-galac... 44 0.012
gb|BE216023.2|BE216023 HV_CEb0009C11f Hordeum vulgare seedl... 42 0.047
>gb|BJ452404.1|BJ452404 BJ452404 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak38o09 5', mRNA sequence
Length = 651
Score = 313 bits (158), Expect = 8e-084
Identities = 437/530 (82%)
Strand = Plus / Plus
Query: 524 gacaactggggcagcatgacgtctcgtgcagaccagaacgacaggtgggcttcctacgcc 583
|||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 34 gacaactggggcagcatgacatcccgtgcggaccagaacgacagatgggcctcctacgct 93
Query: 584 ggacctggcgggtggaacgatcctgacatgcttgaggtgggcaacggcggcatgtccgag 643
|||||||| || ||||| |||||||| |||||||| || || || || || ||||||||
Sbjct: 94 ggacctggtggatggaatgatcctgatatgcttgaagttggaaatggtgggatgtccgaa 153
Query: 644 gcggagtaccgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcggg 703
|| ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 154 gctgagtaccgctcacacttcagcatctgggcacttgccaaggctcctcttctgatcggg 213
Query: 704 tgcgacgtgcgcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcatc 763
||||| ||||| |||||| || |||||| | | |||| ||||||| ||| ||||||
Sbjct: 214 tgcgatgtgcgatcgatgaccccgcagacaaagaccataatcagcaatcaggaggtcatc 273
Query: 764 gccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttg 823
|| || ||||||||| ||||||| || ||||||||||| ||||| ||| || |||
Sbjct: 274 gctgtcaaccaagatcgcctaggtgtccagggaaagaaggtgcaatccgatggcggtttg 333
Query: 824 gaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcag 883
||||| ||||| || ||||||||| |||||| ||||| |||||||| |||||| |||||
Sbjct: 334 gaggtctgggccggaccgctcagcggcaacagaaaggcggtggttctatggaacaggcag 393
Query: 884 ggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgct 943
|| |||||||||||||||||||| || ||||| | | ||||||| || | ||| | |
Sbjct: 394 gggtaccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcgtcc 453
Query: 944 gtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagct 1003
|| || ||||| |||||||||||||||||||| ||||| ||||| || || ||||| ||
Sbjct: 454 gtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgca 513
Query: 1004 tcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| ||| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 514 tcagtggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 563
>gb|BJ456648.1|BJ456648 BJ456648 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak22m17 3', mRNA sequence
Length = 690
Score = 313 bits (158), Expect = 8e-084
Identities = 437/530 (82%)
Strand = Plus / Minus
Query: 524 gacaactggggcagcatgacgtctcgtgcagaccagaacgacaggtgggcttcctacgcc 583
|||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 652 gacaactggggcagcatgacatcccgtgcggaccagaacgacagatgggcctcctacgct 593
Query: 584 ggacctggcgggtggaacgatcctgacatgcttgaggtgggcaacggcggcatgtccgag 643
|||||||| || ||||| |||||||| |||||||| || || || || || ||||||||
Sbjct: 592 ggacctggtggatggaatgatcctgatatgcttgaagttggaaatggtgggatgtccgaa 533
Query: 644 gcggagtaccgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcggg 703
|| ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 532 gctgagtaccgctcacacttcagcatctgggcacttgccaaggctcctcttctgatcggg 473
Query: 704 tgcgacgtgcgcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcatc 763
||||| ||||| |||||| || |||||| | | |||| ||||||| ||| ||||||
Sbjct: 472 tgcgatgtgcgatcgatgaccccgcagacaaagaccataatcagcaatcaggaggtcatc 413
Query: 764 gccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttg 823
|| || ||||||||| ||||||| || ||||||||||| ||||| ||| || |||
Sbjct: 412 gctgtcaaccaagatcgcctaggtgtccagggaaagaaggtgcaatccgatggcggtttg 353
Query: 824 gaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcag 883
||||| ||||| || ||||||||| |||||| ||||| |||||||| |||||| |||||
Sbjct: 352 gaggtctgggccggaccgctcagcggcaacagaaaggcggtggttctatggaacaggcag 293
Query: 884 ggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgct 943
|| |||||||||||||||||||| || ||||| | | ||||||| || | ||| | |
Sbjct: 292 gggtaccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcgtcc 233
Query: 944 gtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagct 1003
|| || ||||| |||||||||||||||||||| ||||| ||||| || || ||||| ||
Sbjct: 232 gtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgca 173
Query: 1004 tcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| ||| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 172 tcagtggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 123
>gb|BU996561.1|BU996561 HM14A03r HM Hordeum vulgare subsp. vulgare cDNA clone HM14A03
5-PRIME, mRNA sequence
Length = 580
Score = 297 bits (150), Expect = 5e-079
Identities = 435/530 (82%)
Strand = Plus / Plus
Query: 524 gacaactggggcagcatgacgtctcgtgcagaccagaacgacaggtgggcttcctacgcc 583
|||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 38 gacaactggggcagcatgacatcccgtgcggaccagaacgacagatgggcctcctacgct 97
Query: 584 ggacctggcgggtggaacgatcctgacatgcttgaggtgggcaacggcggcatgtccgag 643
|||||||| || ||||| |||||||| |||||||| || || || || || ||||||||
Sbjct: 98 ggacctggtggatggaatgatcctgatatgcttgaagttggaaatggtgggatgtccgaa 157
Query: 644 gcggagtaccgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcggg 703
|| ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 158 gctgagtaccgctcacacttcagcatctgggcacttgccaaggctcctcttctgatcggg 217
Query: 704 tgcgacgtgcgcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcatc 763
||||| ||||| |||||| || |||||| | | |||| ||||||| ||| ||||||
Sbjct: 218 tgcgatgtgcgatcgatgaccccgcagacaaagaccataatcagcaatcaggaggtcatc 277
Query: 764 gccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttg 823
|| || ||||||||| ||||||| || ||||||||||| ||||| ||| || |||
Sbjct: 278 gctgtcaaccaagatcgcctaggtgtccagggaaagaaggtgcaatccgatggcggtttg 337
Query: 824 gaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcag 883
||||| ||||| || | ||||||| |||||| ||||| || ||||| |||||| |||||
Sbjct: 338 gaggtctgggccggactgctcagcggcaacagaaaggcggtcgttctatggaacaggcag 397
Query: 884 ggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgct 943
|| |||||||||||||||||||| || ||||| | | ||||||| || | ||| | |
Sbjct: 398 gggtaccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcgtcc 457
Query: 944 gtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagct 1003
|| || ||||| |||||||||||||||||||| ||||| ||||| || || ||||| ||
Sbjct: 458 gtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgca 517
Query: 1004 tcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| ||| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 518 tcagtggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 567
>gb|CB879915.1|CB879915 HP10M23T HP Hordeum vulgare subsp. vulgare cDNA clone HP10M23
5-PRIME, mRNA sequence
Length = 667
Score = 297 bits (150), Expect = 5e-079
Identities = 517/639 (80%), Gaps = 3/639 (0%)
Strand = Plus / Plus
Query: 397 gatgagcaacgctatgaagacgtatgggaagggcatcttcttctcgctgtgcgaatgggg 456
|||||||||||| |||| || || ||| || |||||||||||| || || ||||||||
Sbjct: 22 gatgagcaacgccatgaggaaatacgggcagaacatcttcttctcactctgtgaatgggg 81
Query: 457 gaggcaaaaccctgctacctgggcaggcggcatgggg---aacagctggagaacgaccga 513
| ||||||||||||| |||||| | |||||||| || |||||||| || || |
Sbjct: 82 aaatgaaaaccctgctacatgggcacgtggcatgggtggtaatagctggaggacaactgg 141
Query: 514 tgatatcgccgacaactggggcagcatgacgtctcgtgcagaccagaacgacaggtgggc 573
|| || || |||||||||||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 142 cgacattgctgacaactggggcagcatgacatcccgtgcggaccagaacgacagatgggc 201
Query: 574 ttcctacgccggacctggcgggtggaacgatcctgacatgcttgaggtgggcaacggcgg 633
|||||||| |||||||| || ||||| |||||||| |||||||| || || || || ||
Sbjct: 202 ctcctacgctggacctggtggatggaatgatcctgatatgcttgaagttggaaatggtgg 261
Query: 634 catgtccgaggcggagtaccgctctcacttcagcatctgggcgctcgccaaggctccgct 693
|||||||| || ||||||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct: 262 gatgtccgaagctgagtaccgctcacacttcagcatctgggcacttgccaaggctcctct 321
Query: 694 tctgatcgggtgcgacgtgcgcgcgatgagccagcagacgatgggcatactcagcaactc 753
||||||||||||||| ||||| |||||| || |||||| | | |||| |||||||
Sbjct: 322 tctgatcgggtgcgatgtgcgatcgatgaccccgcagacaaagaccataatcagcaatca 381
Query: 754 ggaagtcatcgccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccag 813
||| |||||||| || ||||||||| ||||||| || || |||||||| ||||| |||
Sbjct: 382 ggaggtcatcgctgtcaaccaagatcgcctaggtgtccanggaaagaaggtgcaatccga 441
Query: 814 caatggcttggaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctg 873
|| |||||||| ||||| || | ||||||| |||||| ||||| || ||||| ||
Sbjct: 442 tggcggtttggaggtctgggccggactgctcagcggcaacagaaaggcggtcgttctatg 501
Query: 874 gaaccggcagggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttc 933
|||| ||||||| |||||||||||||||||||| || ||||| | | ||||||| || |
Sbjct: 502 gaacaggcaggggtaccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggc 561
Query: 934 ttccactgctgtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggcca 993
||| | | || || ||||| |||||||||||||||||||| ||||| ||||| || ||
Sbjct: 562 atccgcgtccgtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggca 621
Query: 994 gctatcagcttcggtgccacctcacgactgcaagatgta 1032
||||| || || ||| ||||| ||||||||||||||
Sbjct: 622 actatccgcatcagtggggcctcatgactgcaagatgta 660
>emb|Y13848.1|HVAGALACB Hordeum vulgare mRNA for alpha-galactosidase b (partial)
Length = 805
Score = 297 bits (150), Expect = 5e-079
Identities = 435/530 (82%)
Strand = Plus / Plus
Query: 524 gacaactggggcagcatgacgtctcgtgcagaccagaacgacaggtgggcttcctacgcc 583
|||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 90 gacaactggggcagcatgacatcccgtgcggaccagaacgacagatgggcctcctacgct 149
Query: 584 ggacctggcgggtggaacgatcctgacatgcttgaggtgggcaacggcggcatgtccgag 643
|||||||| || ||||| |||||||| |||||||| || || || || || ||||||||
Sbjct: 150 ggacctggtggatggaatgatcctgatatgcttgaagttggaaatggtgggatgtccgaa 209
Query: 644 gcggagtaccgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcggg 703
|| ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 210 gctgagtaccgctcacacttcagcatctgggcacttgccaaggctcctcttctgatcggg 269
Query: 704 tgcgacgtgcgcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcatc 763
||||| ||||| |||||| || |||||| | | |||| ||||||| ||| ||||||
Sbjct: 270 tgcgatgtgcgatcgatgaccccgcagacaaagaccataatcagcaatcaggaggtcatc 329
Query: 764 gccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttg 823
|| || ||||||||| ||||||| || ||||||||||| ||||| ||| || |||
Sbjct: 330 gctgtcaaccaagatcgcctaggtgtccagggaaagaaggtgcaatccgatggcggtttg 389
Query: 824 gaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcag 883
||||| ||||| || | ||||||| |||||| ||||| || ||||| |||||| |||||
Sbjct: 390 gaggtctgggccggactgctcagcggcaacagaaaggcggtcgttctatggaacaggcag 449
Query: 884 ggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgct 943
|| |||||||||||||||||||| || ||||| | | ||||||| || | ||| | |
Sbjct: 450 gggtaccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcgtcc 509
Query: 944 gtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagct 1003
|| || ||||| |||||||||||||||||||| ||||| ||||| || || ||||| ||
Sbjct: 510 gtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgca 569
Query: 1004 tcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| ||| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 570 tcagtggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 619
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1270 ttgtaacgagagttgcagcaataaaatt 1297
|||||||| ||||||||||||||||||
Sbjct: 767 ttgtaacggaagttgcagcaataaaatt 794
>gb|AV910726.1|AV910726 AV910726 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1o22 5', mRNA sequence
Length = 571
Score = 291 bits (147), Expect = 3e-077
Identities = 404/489 (82%), Gaps = 3/489 (0%)
Strand = Plus / Plus
Query: 430 catcttcttctcgctgtgcgaatgggggaggcaaaaccctgctacctgggcaggcggcat 489
|||||||||||| || || |||||||| | ||||||||||||| |||||| | |||||
Sbjct: 59 catcttcttctcactctgtgaatggggaaatgaaaaccctgctacatgggcacgtggcat 118
Query: 490 gggg---aacagctggagaacgaccgatgatatcgccgacaactggggcagcatgacgtc 546
||| || |||||||| || || | || || || |||||||||||||||||||| ||
Sbjct: 119 gggtggtaatagctggaggacaactggcgacattgctgacaactggggcagcatgacatc 178
Query: 547 tcgtgcagaccagaacgacaggtgggcttcctacgccggacctggcgggtggaacgatcc 606
||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| |||||
Sbjct: 179 ccgtgcggaccagaacgacagatgggcctcctacgctggacctggtggatggaatgatcc 238
Query: 607 tgacatgcttgaggtgggcaacggcggcatgtccgaggcggagtaccgctctcacttcag 666
||| |||||||| || || || || || |||||||| || ||||||||||| ||||||||
Sbjct: 239 tgatatgcttgaagttggaaatggtgggatgtccgaagctgagtaccgctcacacttcag 298
Query: 667 catctgggcgctcgccaaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagcca 726
||||||||| || ||||||||||| ||||||||||||||||| ||||| |||||| ||
Sbjct: 299 catctgggcacttgccaaggctcctcttctgatcgggtgcgatgtgcgatcgatgacccc 358
Query: 727 gcagacgatgggcatactcagcaactcggaagtcatcgccgtgaaccaagatagcctagg 786
|||||| | | |||| ||||||| ||| |||||||| || ||||||||| |||||||
Sbjct: 359 gcagacaaagaccataatcagcaatcaggaggtcatcgctgtcaaccaagatcgcctagg 418
Query: 787 cgtgcagggaaagaaagtgcagtccagcaatggcttggaggtttgggctgggccgctcag 846
|| ||||||||||| ||||| ||| || |||||||| ||||| || ||||||||
Sbjct: 419 tgtccagggaaagaaggtgcaatccgatggcggtttggaggtctgggccggaccgctcag 478
Query: 847 caacaacaggaaggccgtggttctctggaaccggcagggataccaggcaaccatcaccgc 906
| |||||| ||||| |||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct: 479 cggcaacagaaaggcggtggttctatggaacaggcaggggtaccaggcaaccatcaccgc 538
Query: 907 gcagtggtc 915
|| |||||
Sbjct: 539 acactggtc 547
>gb|CV055576.1|CV055576 BNEL121b6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL121b6 5' similar to probable
alpha-galactosidase, mRNA sequence
Length = 675
Score = 291 bits (147), Expect = 3e-077
Identities = 404/489 (82%), Gaps = 3/489 (0%)
Strand = Plus / Plus
Query: 430 catcttcttctcgctgtgcgaatgggggaggcaaaaccctgctacctgggcaggcggcat 489
|||||||||||| || || |||||||| | ||||||||||||| |||||| | |||||
Sbjct: 7 catcttcttctcactctgtgaatggggaaatgaaaaccctgctacatgggcacgtggcat 66
Query: 490 gggg---aacagctggagaacgaccgatgatatcgccgacaactggggcagcatgacgtc 546
||| || |||||||| || || | || || || |||||||||||||||||||| ||
Sbjct: 67 gggtggtaatagctggaggacaactggcgacattgctgacaactggggcagcatgacatc 126
Query: 547 tcgtgcagaccagaacgacaggtgggcttcctacgccggacctggcgggtggaacgatcc 606
||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| |||||
Sbjct: 127 ccgtgcggaccagaacgacagatgggcctcctacgctggacctggtggatggaatgatcc 186
Query: 607 tgacatgcttgaggtgggcaacggcggcatgtccgaggcggagtaccgctctcacttcag 666
||| |||||||| || || || || || |||||||| || ||||||||||| ||||||||
Sbjct: 187 tgatatgcttgaagttggaaatggtgggatgtccgaagctgagtaccgctcacacttcag 246
Query: 667 catctgggcgctcgccaaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagcca 726
||||||||| || ||||||||||| ||||||||||||||||| ||||| |||||| ||
Sbjct: 247 catctgggcacttgccaaggctcctcttctgatcgggtgcgatgtgcgatcgatgacccc 306
Query: 727 gcagacgatgggcatactcagcaactcggaagtcatcgccgtgaaccaagatagcctagg 786
|||||| | | |||| ||||||| ||| |||||||| || ||||||||| |||||||
Sbjct: 307 gcagacaaagaccataatcagcaatcaggaggtcatcgctgtcaaccaagatcgcctagg 366
Query: 787 cgtgcagggaaagaaagtgcagtccagcaatggcttggaggtttgggctgggccgctcag 846
|| ||||||||||| ||||| ||| || |||||||| ||||| || ||||||||
Sbjct: 367 tgtccagggaaagaaggtgcaatccgatggcggtttggaggtctgggccggaccgctcag 426
Query: 847 caacaacaggaaggccgtggttctctggaaccggcagggataccaggcaaccatcaccgc 906
| |||||| ||||| |||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct: 427 cggcaacagaaaggcggtggttctatggaacaggcaggggtaccaggcaaccatcaccgc 486
Query: 907 gcagtggtc 915
|| |||||
Sbjct: 487 acactggtc 495
>gb|AV928373.1|AV928373 AV928373 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basdc24 3', mRNA sequence
Length = 682
Score = 287 bits (145), Expect = 5e-076
Identities = 427/521 (81%)
Strand = Plus / Minus
Query: 533 ggcagcatgacgtctcgtgcagaccagaacgacaggtgggcttcctacgccggacctggc 592
||||||||||| || ||||| |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 682 ggcagcatgacatcccgtgcggaccagaacgacagatgggcctcctacgctggacctggt 623
Query: 593 gggtggaacgatcctgacatgcttgaggtgggcaacggcggcatgtccgaggcggagtac 652
|| ||||| |||||||| |||||||| || || || || || |||||||| || ||||||
Sbjct: 622 ggatggaatgatcctgatatgcttgaagttggaaatggtgggatgtccgaagctgagtac 563
Query: 653 cgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcgggtgcgacgtg 712
||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 562 cgctcacacttcagcatctgggcacttgccaaggctcctcttctgatcgggtgcgatgtg 503
Query: 713 cgcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcatcgccgtgaac 772
|| |||||| || |||||| | | |||| ||||||| ||| |||||||| || |||
Sbjct: 502 cgatcgatgaccccgcagacaaagaccataatcagcaatcaggaggtcatcgctgtcaac 443
Query: 773 caagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttggaggtttgg 832
|||||| ||||||| || ||||||||||| ||||| ||| || |||||||| |||
Sbjct: 442 caagatcgcctaggtgtccagggaaagaaggtgcaatccgatggcggtttggaggtctgg 383
Query: 833 gctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcagggataccag 892
|| || ||||||||| |||||| ||||| || ||||| |||||| ||||||| ||||||
Sbjct: 382 gccggaccgctcagcggcaacagaaaggcggtcgttctatggaacaggcaggggtaccag 323
Query: 893 gcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgctgtcactgct 952
|||||||||||||| || ||||| | | ||||||| || | ||| | | || || |||
Sbjct: 322 gcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcgtccgtgaccgct 263
Query: 953 cgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcggtgcca 1012
|| |||||||||||||||||||| ||||| ||||| || || ||||| || || |||
Sbjct: 262 cgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgcatcagtgggg 203
Query: 1013 cctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
||||| |||||||||||||| || ||||||| || |||||
Sbjct: 202 cctcatgactgcaagatgtacatcctgacgccaaagtaact 162
>gb|AL506531.1|AL506531 AL506531 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03H07T 5',
mRNA sequence
Length = 700
Score = 285 bits (144), Expect = 2e-075
Identities = 486/600 (81%), Gaps = 3/600 (0%)
Strand = Plus / Plus
Query: 305 gacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaacgac 364
||||||||||| ||| | || ||||| || ||||||||||| || ||||||||| | ||
Sbjct: 14 gacgtgaagactttcgcatcttggggaattgattatctgaagtatgacaactgcnatgat 73
Query: 365 gccggcaggagcgtcatggagaggtatacgaagatgagcaacgctatgaagacgtatggg 424
|| |||||||| |||| || || || || | |||||||||||| |||| || || |||
Sbjct: 74 gctggcaggagtgtcaacgaaagatacactaggatgagcaacgccatgaggaaatacggg 133
Query: 425 aagggcatcttcttctcgctgtgcgaatgggggaggcaaaaccctgctacctgggcaggc 484
|| |||||||||||| || || |||||||| | ||||||||||||| |||||| |
Sbjct: 134 cagaacatcttcttctcactctgtgaatggggaaatgaaaaccctgctacatgggcacgt 193
Query: 485 ggcatgggg---aacagctggagaacgaccgatgatatcgccgacaactggggcagcatg 541
| |||||| || |||||||| || || | || || || ||||||||||||||||||
Sbjct: 194 gncatgggtggtaatagctggaggacaactggcgacattgctgacaactggggcagcatg 253
Query: 542 acgtctcgtgcagaccagaacgacaggtgggcttcctacgccggacctggcgggtggaac 601
|| || ||||| |||||||||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 254 acatcccgtgcggaccagaacgacagatgggcctcctacgctggacctggtggatggaat 313
Query: 602 gatcctgacatgcttgaggtgggcaacggcggcatgtccgaggcggagtaccgctctcac 661
|||||||| |||||||| || || || || || |||||||| || ||||||||||| |||
Sbjct: 314 gatcctgatatgcttgaagttggaaatggtgggatgtccgaagctgagtaccgctcacac 373
Query: 662 ttcagcatctgggcgctcgccaaggctccgcttctgatcgggtgcgacgtgcgcgcgatg 721
|||||||||||||| || ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 374 ttcagcatctgggcacttgccaaggctcctcttctgatcgggtgcgatgtgcgatcgatg 433
Query: 722 agccagcagacgatgggcatactcagcaactcggaagtcatcgccgtgaaccaagatagc 781
| || |||||| | | |||| ||||||| ||| |||||||| || ||||||||| ||
Sbjct: 434 accccgcagacaaagaccataatcagcaatcaggaggtcatcgctgtcaaccaagatcgc 493
Query: 782 ctaggcgtgcagggaaagaaagtgcagtccagcaatggcttggaggtttgggctgggccg 841
||||| || ||||||||||| ||||| ||| || |||||||| ||||| || | |
Sbjct: 494 ctaggtgtccagggaaagaaggtgcaatccgatggcggtttggaggtctgggccggactg 553
Query: 842 ctcagcaacaacaggaaggccgtggttctctggaaccggcagggataccaggcaaccatc 901
|||||| |||||| ||||| || ||||| |||||| ||||||| |||||||||||||||
Sbjct: 554 ctcagcggcaacagaaaggcggtcgttctatggaacaggcaggggtaccaggcaaccatc 613
>gb|AV923193.1|AV923193 AV923193 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12c24 5', mRNA sequence
Length = 704
Score = 283 bits (143), Expect = 7e-075
Identities = 499/617 (80%), Gaps = 3/617 (0%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
||||||||||||||| ||||| ||||||||| |||||| | |||||||||||||
Sbjct: 87 agctggaaccacttctactgcgacatcaacgagcgggtcatcagggagacagctgatgca 146
Query: 65 ctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgg 124
|| ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||||||
Sbjct: 147 ttgatcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgg 206
Query: 125 gcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctct 184
|| || | ||||||| |||||||| | | | ||| |||| | | ||| |||||||||
Sbjct: 207 gcagaattaaacagggattaccagggtaacatggttccaaataaaagaacattcccctct 266
Query: 185 ggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagc 244
|||||||||||||| || || || ||||||| || ||| | |||||||| ||||||||
Sbjct: 267 ggcatcaaggcgcttgcagattatgtgcacgggaaagggttgaagctggggatctacagt 326
Query: 245 gatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgaggagcag 304
||||||||||||| || ||||| | ||||||||||| || || || ||||| |||||
Sbjct: 327 gatgctgggacacaaacatgcagtaacaaaatgccaggatcgctcgatcacgaagagcaa 386
Query: 305 gacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaacgac 364
||||||||||| ||| | || ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 387 gacgtgaagactttcgcatcttggggaattgattatctgaagtacgacaactgcaatgat 446
Query: 365 gccggcaggagcgtcatggagaggtatacgaagatgagcaacgctatgaagacgtatggg 424
|| |||||||| |||| || || || || | |||||||||||| |||| || || |||
Sbjct: 447 gctggcaggagtgtcaacgaaagatacactaggatgagcaacgccatgaggaaatacggg 506
Query: 425 aagggcatcttcttctcgctgtgcgaatgggggaggcaaaaccctgctacctgggcaggc 484
|| |||||||||||| || || |||||||| | ||||||||||||| |||||| |
Sbjct: 507 cagaacatcttcttctcactctgtgaatggggaaatgaaaaccctgctacatgggcacgt 566
Query: 485 ggcatg---gggaacagctggagaacgaccgatgatatcgccgacaactggggcagcatg 541
|||||| || || |||||||| || || | || || || ||||||||||||||||||
Sbjct: 567 ggcatgggtggtaatagctggaggacaactggcgacattgctgacaactggggcagcatg 626
Query: 542 acgtctcgtgcagaccagaacgacaggtgggcttcctacgccggacctggcgggtggaac 601
|| || ||||| |||||||||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 627 acatcccgtgcggaccagaacgacagatgggcctcctacgctggacctggtggatggaat 686
Query: 602 gatcctgacatgcttga 618
|||||||| ||||||||
Sbjct: 687 gatcctgatatgcttga 703
>gb|BJ450517.1|BJ450517 BJ450517 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30a05 5', mRNA sequence
Length = 658
Score = 283 bits (143), Expect = 7e-075
Identities = 499/617 (80%), Gaps = 3/617 (0%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
||||||||||||||| ||||| ||||||||| |||||| | |||||||||||||
Sbjct: 33 agctggaaccacttctactgcgacatcaacgagcgggtcatcagggagacagctgatgca 92
Query: 65 ctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgg 124
|| ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||||||
Sbjct: 93 ttgatcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgg 152
Query: 125 gcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctct 184
|| || | ||||||| |||||||| | | | ||| |||| | | ||| |||||||||
Sbjct: 153 gcagaattaaacagggattaccagggtaacatggttccaaataaaagaacattcccctct 212
Query: 185 ggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagc 244
|||||||||||||| || || || ||||||| || ||| | |||||||| ||||||||
Sbjct: 213 ggcatcaaggcgcttgcagattatgtgcacgggaaagggttgaagctggggatctacagt 272
Query: 245 gatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgaggagcag 304
||||||||||||| || ||||| | ||||||||||| || || || ||||| |||||
Sbjct: 273 gatgctgggacacaaacatgcagtaacaaaatgccaggatcgctcgatcacgaagagcaa 332
Query: 305 gacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaacgac 364
||||||||||| ||| |||| ||||| || ||||||||||| || ||||||||||| ||
Sbjct: 333 gacgtgaagactttcgcgtcttggggaattgattatctgaagtatgacaactgcaatgat 392
Query: 365 gccggcaggagcgtcatggagaggtatacgaagatgagcaacgctatgaagacgtatggg 424
|| |||||||| |||| || || || || | |||||||||||| |||| || || |||
Sbjct: 393 gctggcaggagtgtcaacgaaagatacactaggatgagcaacgccatgaggaaatacggg 452
Query: 425 aagggcatcttcttctcgctgtgcgaatgggggaggcaaaaccctgctacctgggcaggc 484
|| |||||||||||| || || |||||||| | ||||||||||||| |||||| |
Sbjct: 453 cagaacatcttcttctcactctgtgaatggggaaatgaaaaccctgctacatgggcacgt 512
Query: 485 ggcatg---gggaacagctggagaacgaccgatgatatcgccgacaactggggcagcatg 541
|||||| || || |||||||| || || | || || || ||||||||||||||||||
Sbjct: 513 ggcatgggtggtaatagctggaggacaactggcgacattgctgacaactggggcagcatg 572
Query: 542 acgtctcgtgcagaccagaacgacaggtgggcttcctacgccggacctggcgggtggaac 601
|| || ||||| |||||||||||||| ||||| |||||||| |||||||| || |||||
Sbjct: 573 acatcccgtgcggaccagaacgacagatgggcctcctacgctggacctggtggatggaat 632
Query: 602 gatcctgacatgcttga 618
|||||||| ||||||||
Sbjct: 633 gatcctgatatgcttga 649
>gb|BJ457941.1|BJ457941 BJ457941 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak30a05 3', mRNA sequence
Length = 656
Score = 278 bits (140), Expect = 5e-073
Identities = 410/500 (82%)
Strand = Plus / Minus
Query: 554 gaccagaacgacaggtgggcttcctacgccggacctggcgggtggaacgatcctgacatg 613
|||||||||||||| ||||| |||||||| |||||||| || ||||| |||||||| |||
Sbjct: 655 gaccagaacgacagatgggcctcctacgctggacctggtggatggaatgatcctgatatg 596
Query: 614 cttgaggtgggcaacggcggcatgtccgaggcggagtaccgctctcacttcagcatctgg 673
||||| || || || || || |||||||| || ||||||||||| |||||||||||||||
Sbjct: 595 cttgaagttggaaatggtgggatgtccgaagctgagtaccgctcacacttcagcatctgg 536
Query: 674 gcgctcgccaaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccagcagacg 733
|| || ||||||||||| ||||||||||||||||| ||||| |||||| || ||||||
Sbjct: 535 gcacttgccaaggctcctcttctgatcgggtgcgatgtgcgatcgatgaccccgcagaca 476
Query: 734 atgggcatactcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtgcag 793
| | |||| ||||||| ||| |||||||| || ||||||||| ||||||| || |||
Sbjct: 475 aagaccataatcagcaatcaggaggtcatcgctgtcaaccaagatcgcctaggtgtccag 416
Query: 794 ggaaagaaagtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaac 853
|||||||| ||||| ||| || |||||||| ||||| || ||||||||| ||||
Sbjct: 415 ggaaagaaggtgcaatccgatggcggtttggaggtctgggccggaccgctcagcggcaac 356
Query: 854 aggaaggccgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtgg 913
|| ||||| |||||||| |||||| ||||||| |||||||||||||||||||| || |||
Sbjct: 355 agaaaggcggtggttctatggaacaggcaggggtaccaggcaaccatcaccgcacactgg 296
Query: 914 tcgagcatcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcg 973
|| | | ||||||| || | ||| | | || || ||||| ||||||||||||||||||
Sbjct: 295 tcaaacgtcgggcttccggcatccgcgtccgtgaccgctcgcgatctatgggcgcactcg 236
Query: 974 tcattctcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtat 1033
|| ||||| ||||| || || ||||| || || ||| ||||| ||||||||||||||
Sbjct: 235 tcgttctccgctcaggggcaactatccgcatcagtggggcctcatgactgcaagatgtac 176
Query: 1034 gtcttgacgccgaactaact 1053
|| ||||||| || |||||
Sbjct: 175 atcctgacgccaaagtaact 156
>gb|BU967447.1|BU967447 HB04F13r BC Hordeum vulgare subsp. vulgare cDNA clone HB04F13
5-PRIME, mRNA sequence
Length = 577
Score = 278 bits (140), Expect = 5e-073
Identities = 427/522 (81%), Gaps = 3/522 (0%)
Strand = Plus / Plus
Query: 397 gatgagcaacgctatgaagacgtatgggaagggcatcttcttctcgctgtgcgaatgggg 456
|||||||||||| |||| || || ||| || |||||||||||| || || ||||||||
Sbjct: 52 gatgagcaacgccatgaggaaatacgggcagaacatcttcttctcactctgtgaatgggg 111
Query: 457 gaggcaaaaccctgctacctgggcaggcggcatgggg---aacagctggagaacgaccga 513
| ||||||||||||| |||||| | |||||||| || |||||||| || || |
Sbjct: 112 aaatgaaaaccctgctacatgggcacgtggcatgggtggtaatagctggaggacaactgg 171
Query: 514 tgatatcgccgacaactggggcagcatgacgtctcgtgcagaccagaacgacaggtgggc 573
|| || || |||||||||||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 172 cgacattgctgacaactggggcagcatgacatcccgtgcggaccagaacgacagatgggc 231
Query: 574 ttcctacgccggacctggcgggtggaacgatcctgacatgcttgaggtgggcaacggcgg 633
|||||||| |||||||| || ||||| |||||||| |||||||| || || || || ||
Sbjct: 232 ctcctacgctggacctggtggatggaatgatcctgatatgcttgaagttggaaatggtgg 291
Query: 634 catgtccgaggcggagtaccgctctcacttcagcatctgggcgctcgccaaggctccgct 693
|||||||| || ||||||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct: 292 gatgtccgaagctgagtaccgctcacacttcagcatctgggcacttgccaaggctcctct 351
Query: 694 tctgatcgggtgcgacgtgcgcgcgatgagccagcagacgatgggcatactcagcaactc 753
||||||||||||||| ||||| |||||| || |||||| | | |||| |||||||
Sbjct: 352 tctgatcgggtgcgatgtgcgatcgatgaccccgcagacaaagaccataatcagcaatca 411
Query: 754 ggaagtcatcgccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccag 813
||| |||||||| || ||||||||| ||||||| || ||||||||||| ||||| |||
Sbjct: 412 ggaggtcatcgctgtcaaccaagatcgcctaggtgtccagggaaagaaggtgcaatccga 471
Query: 814 caatggcttggaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctg 873
|| |||||||| ||||| || | ||||||| |||||| ||||| || ||||| ||
Sbjct: 472 tggcggtttggaggtctgggccggactgctcagcggcaacagaaaggcggtcgttctatg 531
Query: 874 gaaccggcagggataccaggcaaccatcaccgcgcagtggtc 915
|||| ||||||| |||||||||||||||||||| || |||||
Sbjct: 532 gaacaggcaggggtaccaggcaaccatcaccgcacactggtc 573
>gb|AV927017.1|AV927017 AV927017 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd26h01 5', mRNA sequence
Length = 614
Score = 252 bits (127), Expect = 3e-065
Identities = 400/491 (81%)
Strand = Plus / Plus
Query: 563 gacaggtgggcttcctacgccggacctggcgggtggaacgatcctgacatgcttgaggtg 622
||||| ||||| |||||||| |||||||| || ||||| |||||||| |||||||| ||
Sbjct: 12 gacagatgggcctcctacgctggacctggtggatggaatgatcctgatatgcttgaagtt 71
Query: 623 ggcaacggcggcatgtccgaggcggagtaccgctctcacttcagcatctgggcgctcgcc 682
|| || || || |||||||| || ||||||||||| ||||||||||||||||| || |||
Sbjct: 72 ggaaatggtgggatgtccgaagctgagtaccgctcacacttcagcatctgggcacttgcc 131
Query: 683 aaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccagcagacgatgggcata 742
|||||||| ||||||||||||||||| ||||| |||||| || |||||| | | ||||
Sbjct: 132 aaggctcctcttctgatcgggtgcgatgtgcgatcgatgaccccgcagacaaagaccata 191
Query: 743 ctcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtgcagggaaagaaa 802
||||||| ||| |||||||| || ||||||||| ||||||| || |||||||||||
Sbjct: 192 atcagcaatcaggaggtcatcgctgtcaaccaagatcgcctaggtgtccagggaaagaag 251
Query: 803 gtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaacaggaaggcc 862
||||| ||| || |||||||| ||||| || ||||||||| |||||| |||||
Sbjct: 252 gtgcaatccgatggcggtttggaggtctgggccggaccgctcagcggcaacagaaaggcg 311
Query: 863 gtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtggtcgagcatc 922
|| ||||| |||||| ||||||| |||||||||||||||||||| || ||||| | | ||
Sbjct: 312 gtcgttctatggaacaggcaggggtaccaggcaaccatcaccgcacactggtcaaacgtc 371
Query: 923 gggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcgtcattctcg 982
||||| || | ||| | | || || ||||| |||||||||||||||||||| |||||
Sbjct: 372 gggcttccggcatccgcgtccgtgaccgctcgcgatctatgggcgcactcgtcgttctcc 431
Query: 983 gctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtatgtcttgacg 1042
||||| || || ||||| || || ||| ||||| |||||||||||||| || |||||
Sbjct: 432 gctcaggggcaactatccgcatcagtggggcctcatgactgcaagatgtacatcctgacg 491
Query: 1043 ccgaactaact 1053
|| || |||||
Sbjct: 492 ccaaagtaact 502
>gb|AV931851.1|AV931851 AV931851 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd26h01 3', mRNA sequence
Length = 661
Score = 252 bits (127), Expect = 3e-065
Identities = 400/491 (81%)
Strand = Plus / Minus
Query: 563 gacaggtgggcttcctacgccggacctggcgggtggaacgatcctgacatgcttgaggtg 622
||||| ||||| |||||||| |||||||| || ||||| |||||||| |||||||| ||
Sbjct: 660 gacagatgggcctcctacgctggacctggtggatggaatgatcctgatatgcttgaagtt 601
Query: 623 ggcaacggcggcatgtccgaggcggagtaccgctctcacttcagcatctgggcgctcgcc 682
|| || || || |||||||| || ||||||||||| ||||||||||||||||| || |||
Sbjct: 600 ggaaatggtgggatgtccgaagctgagtaccgctcacacttcagcatctgggcacttgcc 541
Query: 683 aaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccagcagacgatgggcata 742
|||||||| ||||||||||||||||| ||||| |||||| || |||||| | | ||||
Sbjct: 540 aaggctcctcttctgatcgggtgcgatgtgcgatcgatgaccccgcagacaaagaccata 481
Query: 743 ctcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtgcagggaaagaaa 802
||||||| ||| |||||||| || ||||||||| ||||||| || |||||||||||
Sbjct: 480 atcagcaatcaggaggtcatcgctgtcaaccaagatcgcctaggtgtccagggaaagaag 421
Query: 803 gtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaacaggaaggcc 862
||||| ||| || |||||||| ||||| || ||||||||| |||||| |||||
Sbjct: 420 gtgcaatccgatggcggtttggaggtctgggccggaccgctcagcggcaacagaaaggcg 361
Query: 863 gtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtggtcgagcatc 922
|| ||||| |||||| ||||||| |||||||||||||||||||| || ||||| | | ||
Sbjct: 360 gtcgttctatggaacaggcaggggtaccaggcaaccatcaccgcacactggtcaaacgtc 301
Query: 923 gggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcgtcattctcg 982
||||| || | ||| | | || || ||||| |||||||||||||||||||| |||||
Sbjct: 300 gggcttccggcatccgcgtccgtgaccgctcgcgatctatgggcgcactcgtcgttctcc 241
Query: 983 gctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtatgtcttgacg 1042
||||| || || ||||| || || ||| ||||| |||||||||||||| || |||||
Sbjct: 240 gctcaggggcaactatccgcatcagtggggcctcatgactgcaagatgtacatcctgacg 181
Query: 1043 ccgaactaact 1053
|| || |||||
Sbjct: 180 ccaaagtaact 170
>gb|BU989055.1|BU989055 HF19K04r HF Hordeum vulgare subsp. vulgare cDNA clone HF19K04
5-PRIME, mRNA sequence
Length = 609
Score = 248 bits (125), Expect = 4e-064
Identities = 461/571 (80%), Gaps = 4/571 (0%)
Strand = Plus / Plus
Query: 51 agacagctgatgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaaca 110
||||||||||||| || ||| ||||||||||||||| ||||||| | ||||| ||||
Sbjct: 34 agacagctgatgcattgatca-caccggtctggcgaaattgggctataaatatgttaaca 92
Query: 111 tagatgattgctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagac 170
| |||||||||||||| || | ||||||| |||||||| | | | ||| |||| | |
Sbjct: 93 tcgatgattgctgggcagaattaaacagggattaccagggtaacatggttccaaataaaa 152
Query: 171 aaaccttcccctctggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagc 230
||| ||||||||||||||||||||||| || || || ||||||| || ||| | ||||
Sbjct: 153 gaacattcccctctggcatcaaggcgcttgcagattatgtgcacgggaaagggttgaagc 212
Query: 231 tgggcatctacagcgatgctgggacacggacgtgcagccagaaaatgccagggtcacttg 290
|||| |||||||| ||||||||||||| || ||||| | ||||||||||| || || |
Sbjct: 213 tggggatctacagtgatgctgggacacaaacatgcagtaacaaaatgccaggatcgctcg 272
Query: 291 accacgaggagcaggacgtgaagacattctcgtcctggggtatcgattatctgaaatacg 350
| ||||| ||||| ||||||||||| ||| | || ||||| || ||||||||||| || |
Sbjct: 273 atcacgaagagcaagacgtgaagactttcgcatcttggggaattgattatctgaagtatg 332
Query: 351 acaactgcaacgacgccggcaggagcgtcatggagaggtatacgaagatgagcaacgcta 410
|||||||||| || || |||||||| |||| || || || || | |||||||||||| |
Sbjct: 333 acaactgcaatgatgctggcaggagtgtcaacgaaagatacactaggatgagcaacgcca 392
Query: 411 tgaagacgtatgggaagggcatcttcttctcgctgtgcgaatgggggaggcaaaaccctg 470
||| || || ||| || |||||||||||| || || |||||||| | |||||||||
Sbjct: 393 tgaggaaatacgggcagaacatcttcttctcactctgtgaatggggaaatgaaaaccctg 452
Query: 471 ctacctgggcaggcggcatg---gggaacagctggagaacgaccgatgatatcgccgaca 527
|||| |||||| | |||||| || || |||||||| || || | || || || ||||
Sbjct: 453 ctacatgggcacgtggcatgggtggtaatagctggaggacaactggcgacattgctgaca 512
Query: 528 actggggcagcatgacgtctcgtgcagaccagaacgacaggtgggcttcctacgccggac 587
|||||||||||||||| || ||||| |||||||||||||| ||||| |||||||| ||||
Sbjct: 513 actggggcagcatgacatcccgtgcggaccagaacgacagatgggcctcctacgctggac 572
Query: 588 ctggcgggtggaacgatcctgacatgcttga 618
|||| || ||||| |||||||| ||||||||
Sbjct: 573 ctggtggatggaatgatcctgatatgcttga 603
>gb|BI947688.1|BI947688 HVSMEl0006H04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006H04f, mRNA sequence
Length = 842
Score = 238 bits (120), Expect = 4e-061
Identities = 306/368 (83%)
Strand = Plus / Plus
Query: 548 cgtgcagaccagaacgacaggtgggcttcctacgccggacctggcgggtggaacgatcct 607
||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 7 cgtgcggaccagaacgacagatgggcctcctacgctggacctggtggatggaatgatcct 66
Query: 608 gacatgcttgaggtgggcaacggcggcatgtccgaggcggagtaccgctctcacttcagc 667
|| |||||||| || || || || || |||||||| || ||||||||||| |||||||||
Sbjct: 67 gatatgcttgaagttggaaatggtgggatgtccgaagctgagtaccgctcacacttcagc 126
Query: 668 atctgggcgctcgccaaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccag 727
|||||||| || ||||||||||| ||||||||||||||||| ||||| |||||| || |
Sbjct: 127 atctgggcacttgccaaggctcctcttctgatcgggtgcgaggtgcgatcgatgaccccg 186
Query: 728 cagacgatgggcatactcagcaactcggaagtcatcgccgtgaaccaagatagcctaggc 787
||||| | | |||| ||||||| ||| |||||||| || ||||||||| |||||||
Sbjct: 187 cagacaaagaccataatcagcaatcaggaggtcatcgctgtcaaccaagatcgcctaggt 246
Query: 788 gtgcagggaaagaaagtgcagtccagcaatggcttggaggtttgggctgggccgctcagc 847
|| ||||||||||| ||||| ||| || |||||||| ||||| || |||||||||
Sbjct: 247 gtccagggaaagaaggtgcaatccgatggcggtttggaggtctgggccggaccgctcagc 306
Query: 848 aacaacaggaaggccgtggttctctggaaccggcagggataccaggcaaccatcaccgcg 907
|||||| ||||| || ||||| |||||| ||||||| |||||||||||||| |||||
Sbjct: 307 ggcaacagaaaggcggtcgttctatggaacaggcaggggtaccaggcaaccatgaccgca 366
Query: 908 cagtggtc 915
|| |||||
Sbjct: 367 cactggtc 374
>gb|AV926578.1|AV926578 AV926578 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd19o13 5', mRNA sequence
Length = 616
Score = 238 bits (120), Expect = 4e-061
Identities = 400/492 (81%), Gaps = 1/492 (0%)
Strand = Plus / Plus
Query: 563 gacaggtgggcttcctacgccgg-acctggcgggtggaacgatcctgacatgcttgaggt 621
||||| ||||| |||||||| || |||||| || ||||| |||||||| |||||||| ||
Sbjct: 14 gacagatgggcctcctacgctggnacctggtggatggaatgatcctgatatgcttgaagt 73
Query: 622 gggcaacggcggcatgtccgaggcggagtaccgctctcacttcagcatctgggcgctcgc 681
|| || || || |||||||| || ||||||||||| ||||||||||||||||| || ||
Sbjct: 74 tggaaatggtgggatgtccgaagctgagtaccgctcacacttcagcatctgggcacttgc 133
Query: 682 caaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccagcagacgatgggcat 741
||||||||| ||||||||||||||||| ||||| |||||| || |||||| | | |||
Sbjct: 134 caaggctcctcttctgatcgggtgcgatgtgcgatcgatgaccccgcagacaaagaccat 193
Query: 742 actcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtgcagggaaagaa 801
| ||||||| ||| |||||||| || ||||||||| ||||||| || |||||||||||
Sbjct: 194 aatcagcaatcaggaggtcatcgctgtcaaccaagatcgcctaggtgtccagggaaagaa 253
Query: 802 agtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaacaggaaggc 861
||||| ||| || |||||||| ||||| || ||||||||| |||||| |||||
Sbjct: 254 ggtgcaatccgatggcggtttggaggtctgggccggaccgctcagcggcaacagaaaggc 313
Query: 862 cgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtggtcgagcat 921
|| ||||| |||||| ||||||| |||||||||||||||||||| || ||||| | | |
Sbjct: 314 ggtcgttctatggaacaggcaggggtaccaggcaaccatcaccgcacactggtcaaacgt 373
Query: 922 cgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcgtcattctc 981
|||||| || | ||| | | || || ||||| |||||||||||||||||||| |||||
Sbjct: 374 cgggcttccggcatccgcgtccgtgaccgctcgcgatctatgggcgcactcgtcgttctc 433
Query: 982 ggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtatgtcttgac 1041
||||| || || ||||| || || ||| ||||| |||||||||||||| || ||||
Sbjct: 434 cgctcaggggcaactatccgcatcagtggggcctcatgactgcaagatgtacatcctgac 493
Query: 1042 gccgaactaact 1053
||| || |||||
Sbjct: 494 gccaaagtaact 505
>gb|AV912236.1|AV912236 AV912236 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak1o22 3', mRNA sequence
Length = 578
Score = 204 bits (103), Expect = 5e-051
Identities = 328/403 (81%)
Strand = Plus / Minus
Query: 651 accgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcgggtgcgacg 710
||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||| |
Sbjct: 578 accgctcacacttcagcatctgggcacttgccaaggctcctcttctgatcgggtgcgatg 519
Query: 711 tgcgcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcatcgccgtga 770
|||| |||||| || |||||| | | |||| ||||||| ||| |||||||| || |
Sbjct: 518 tgcgatcgatgaccccgcagacaaagaccataatcagcaatcaggaggtcatcgctgtca 459
Query: 771 accaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttggaggttt 830
|||||||| ||||||| || ||||||||||| ||||| ||| || |||||||| |
Sbjct: 458 accaagatcgcctaggtgtccagggaaagaaggtgcaatccgatggcggtttggaggtct 399
Query: 831 gggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcagggatacc 890
|||| || ||||||||| |||||| ||||| |||||||| |||||| ||||||| ||||
Sbjct: 398 gggccggaccgctcagcggcaacagaaaggcggtggttctatggaacaggcaggggtacc 339
Query: 891 aggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgctgtcactg 950
|||||||||||||||| || ||||| | | ||||||| || | ||| | | || || |
Sbjct: 338 aggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcgtccgtgaccg 279
Query: 951 ctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcggtgc 1010
|||| |||||||||||||||||||| ||||| ||||| || || ||||| || || |||
Sbjct: 278 ctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgcatcagtgg 219
Query: 1011 cacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
||||| |||||||||||||| || ||||||| || |||||
Sbjct: 218 ggcctcatgactgcaagatgtacatcctgacgccaaagtaact 176
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1270 ttgtaacgagagttgcagcaataaaatt 1297
|||||||| ||||||||||||||||||
Sbjct: 28 ttgtaacggaagttgcagcaataaaatt 1
>gb|BJ459953.1|BJ459953 BJ459953 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38o09 3', mRNA sequence
Length = 247
Score = 200 bits (101), Expect = 9e-050
Identities = 182/209 (87%)
Strand = Plus / Minus
Query: 524 gacaactggggcagcatgacgtctcgtgcagaccagaacgacaggtgggcttcctacgcc 583
|||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 227 gacaactggggcagcatgacatcccgtgcggaccagaacgacagatgggcctcctacgct 168
Query: 584 ggacctggcgggtggaacgatcctgacatgcttgaggtgggcaacggcggcatgtccgag 643
|||||||| || ||||| |||||||| |||||||| || || || || || ||||||||
Sbjct: 167 ggacctggtggatggaatgatcctgatatgcttgaagttggaaatggtgggatgtccgaa 108
Query: 644 gcggagtaccgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcggg 703
|| ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 107 gctgagtaccgctcacacttcagcatctgggcacttgccaaggctcctcttctgatcggg 48
Query: 704 tgcgacgtgcgcgcgatgagccagcagac 732
||||| ||||| |||||| || ||||||
Sbjct: 47 tgcgatgtgcgatcgatgaccccgcagac 19
>gb|BF260752.2|BF260752 HVSMEf0022N15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022N15f, mRNA sequence
Length = 805
Score = 194 bits (98), Expect = 5e-048
Identities = 362/450 (80%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
||||||||||||||| ||||| ||||||||| |||||| | |||||||||||||
Sbjct: 102 agctggaaccacttctactgcgacatcaacgagcgggtcatcagggagacagctgatgca 161
Query: 65 ctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgg 124
|| ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||||||
Sbjct: 162 ttgatcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgg 221
Query: 125 gcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctct 184
|| || | ||||||| |||||||| | | | |||||||| | | ||| |||||||||
Sbjct: 222 gcagaattaaacagggattaccagggtaacatggttgcaaataaaagaacattcccctct 281
Query: 185 ggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagc 244
|||||||||||||| || || || ||||||| || ||| | |||||||| ||||||||
Sbjct: 282 ggcatcaaggcgcttgcagattatgtgcacgggaaagggttgaagctggggatctacagt 341
Query: 245 gatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgaggagcag 304
||||||||||||| || ||||| | ||||||||||| || || || ||||| |||||
Sbjct: 342 gatgctgggacacaaacatgcagtaacaaaatgccaggatcgctcgatcacgaagagcaa 401
Query: 305 gacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaacgac 364
||||||||||| ||| | || ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 402 gacgtgaagactttcgcatcttggggaattgattatctgaagtacgacaactgcaatgat 461
Query: 365 gccggcaggagcgtcatggagaggtatacgaagatgagcaacgctatgaagacgtatggg 424
|| |||| ||| |||| || || || || | |||||||||||| |||| || || |||
Sbjct: 462 gctggcacgagtgtcaacgaaagatacactaggatgagcaacgccatgaggaaatacggg 521
Query: 425 aagggcatcttcttctcgctgtgcgaatgg 454
|| |||||||||||| || || ||||||
Sbjct: 522 cagaacatcttcttctcactctgtgaatgg 551
Score = 95.6 bits (48), Expect = 4e-018
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 524 gacaactggggcagcatgacgtctcgtgcagaccagaacgacaggtgggcttcctacgcc 583
|||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 625 gacaactggggcagcatgacatcccgtgcggaccagaacgacagatgggcctcctacgct 684
Query: 584 ggacctggcgggtggaacgatcctgacatgct 615
||| |||| || ||||| |||||||| |||||
Sbjct: 685 ggaactgggggatggaatgatcctgaaatgct 716
>gb|BU996226.1|BU996226 HM12O16r HM Hordeum vulgare subsp. vulgare cDNA clone HM12O16
5-PRIME, mRNA sequence
Length = 591
Score = 194 bits (98), Expect = 5e-048
Identities = 329/406 (81%)
Strand = Plus / Minus
Query: 648 agtaccgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcgggtgcg 707
|||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 591 agtaccgctcacacttcagcatctgggcacttgccaaggctcctcttctgatcgggtgcg 532
Query: 708 acgtgcgcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcatcgccg 767
| ||||| |||||| || |||||| | | |||| ||||||| ||| |||||||| |
Sbjct: 531 atgtgcgatcgatgaccccgcagacaaagaccataatcagcaatcaggaggtcatcgctg 472
Query: 768 tgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttggagg 827
| ||||||||| ||||||| || ||||||||||| ||||| ||| || |||||||
Sbjct: 471 tcaaccaagatcgcctaggtgtccagggaaagaaggtgcaatccgatggcggtttggagg 412
Query: 828 tttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcagggat 887
| ||||| || | ||||||| |||||| ||||| || ||||| |||||| ||||||| |
Sbjct: 411 tctgggccggactgctcagcggcaacagaaaggcggtcgttctatggaacaggcaggggt 352
Query: 888 accaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgctgtca 947
||||||||||||||||||| || ||||| | | ||||||| || | ||| | | || |
Sbjct: 351 accaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcgtccgtga 292
Query: 948 ctgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcgg 1007
| ||||| |||||||||||||||||||| ||||| ||||| || || ||||| || || |
Sbjct: 291 ccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgcatcag 232
Query: 1008 tgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 231 tggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 186
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1270 ttgtaacgagagttgcagcaataaaattgg 1299
|||||||| ||||||||||||||||||||
Sbjct: 38 ttgtaacggaagttgcagcaataaaattgg 9
>gb|BI950939.1|BI950939 HVSMEl0023L17f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023L17f, mRNA sequence
Length = 468
Score = 190 bits (96), Expect = 8e-047
Identities = 306/376 (81%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
||||||||||||||| ||||| ||||||||| |||||| | |||||||||||||
Sbjct: 80 agctggaaccacttctactgcgacatcaacgagcgggtcatcagggagacagctgatgca 139
Query: 65 ctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgg 124
|| ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||||||
Sbjct: 140 ttgatcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgg 199
Query: 125 gcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctct 184
|| || | ||||||| |||||||| | | | ||| |||| | | ||| |||||||||
Sbjct: 200 gcagaattaaacagggattaccagggtaacatggttccaaataaaagaacattcccctct 259
Query: 185 ggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagc 244
|||||||||||||| || || || ||||||| || ||| | |||||||| ||||||||
Sbjct: 260 ggcatcaaggcgcttgcagattatgtgcacgggaaagggttgaagctggggatctacagt 319
Query: 245 gatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgaggagcag 304
||||||||||||| || ||||| | ||||||||||| || || || ||||| |||||
Sbjct: 320 gatgctgggacacaaacatgcagtaacaaaatgccaggatcgctcgatcacgaagagcaa 379
Query: 305 gacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaacgac 364
||||||||||| ||| | || ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 380 gacgtgaagactttcgcatcttggggaattgattatctgaagtacgacaactgcaatgat 439
Query: 365 gccggcaggagcgtca 380
|| |||||||| ||||
Sbjct: 440 gctggcaggagtgtca 455
>gb|AV931470.1|AV931470 AV931470 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd19o13 3', mRNA sequence
Length = 574
Score = 188 bits (95), Expect = 3e-046
Identities = 320/395 (81%)
Strand = Plus / Minus
Query: 659 cacttcagcatctgggcgctcgccaaggctccgcttctgatcgggtgcgacgtgcgcgcg 718
||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 570 cacttcagcatctgggcacttgccaaggctcctcttctgatcgggtgcgatgtgcgatcg 511
Query: 719 atgagccagcagacgatgggcatactcagcaactcggaagtcatcgccgtgaaccaagat 778
|||| || |||||| | | |||| ||||||| ||| |||||||| || |||||||||
Sbjct: 510 atgaccccgcagacaaagaccataatcagcaatcaggaggtcatcgctgtcaaccaagat 451
Query: 779 agcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttggaggtttgggctggg 838
||||||| || ||||||||||| ||||| ||| || |||||||| ||||| ||
Sbjct: 450 cgcctaggtgtccagggaaagaaggtgcaatccgatggcggtttggaggtctgggccgga 391
Query: 839 ccgctcagcaacaacaggaaggccgtggttctctggaaccggcagggataccaggcaacc 898
||||||||| |||||| ||||| || ||||| |||||| ||||||| ||||||||||||
Sbjct: 390 ccgctcagcggcaacagaaaggcggtcgttctatggaacaggcaggggtaccaggcaacc 331
Query: 899 atcaccgcgcagtggtcgagcatcgggctcccttcttccactgctgtcactgctcgtgat 958
|||||||| || ||||| | | ||||||| || | ||| | | || || ||||| |||
Sbjct: 330 atcaccgcacactggtcaaacgtcgggcttccggcatccgcgtccgtgaccgctcgcgat 271
Query: 959 ctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcggtgccacctcac 1018
||||||||||||||||| ||||| ||||| || || ||||| || || ||| |||||
Sbjct: 270 ctatgggcgcactcgtcgttctccgctcaggggcaactatccgcatcagtggggcctcat 211
Query: 1019 gactgcaagatgtatgtcttgacgccgaactaact 1053
|||||||||||||| || ||||||| || |||||
Sbjct: 210 gactgcaagatgtacatcctgacgccaaagtaact 176
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1270 ttgtaacgagagttgcagcaataaaatt 1297
|||||||| ||||||||||||||||||
Sbjct: 28 ttgtaacggaagttgcagcaataaaatt 1
>gb|BI952567.1|BI952567 HVSMEm0007A03f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007A03f, mRNA sequence
Length = 1184
Score = 176 bits (89), Expect = 1e-042
Identities = 329/409 (80%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
||||||||||||||| ||||| ||||||||| |||||| | |||||||||||||
Sbjct: 44 agctggaaccacttctactgcgacatcaacgagcgggtcatcagggagacagctgatgca 103
Query: 65 ctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgg 124
|| ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||||||
Sbjct: 104 ttgatcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgg 163
Query: 125 gcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctct 184
|| || | ||||||| |||||||| | | | ||| |||| | | ||| |||||||||
Sbjct: 164 gcagaattaaacagggattaccagggtaacatggttccaaataaaagaacattcccctct 223
Query: 185 ggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagc 244
|||||||||||||| || || || ||||||| || ||| | |||||||| ||||||||
Sbjct: 224 ggcatcaaggcgcttgcagattatgtgcacgggaaagggttgaagctggggatctacagt 283
Query: 245 gatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgaggagcag 304
||||||||||||| || ||||| | ||||||||||| || || || ||||| |||
Sbjct: 284 gatgctgggacacaaacatgcagtaacaaaatgccaggatcgctcgatcacgaagaggca 343
Query: 305 gacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaacgac 364
||||||||||| ||| | || ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 344 gacgtgaagactttcccttcttggggaattgattatctgaagtacgacaactgcaatgat 403
Query: 365 gccggcaggagcgtcatggagaggtatacgaagatgagcaacgctatga 413
|| |||||||| |||| || || || || | |||||||||||| ||||
Sbjct: 404 gctggcaggagtgtcaacgaaagatacactaggatgagcaacgccatga 452
>gb|CA023878.1|CA023878 HZ47K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47K23
5-PRIME, mRNA sequence
Length = 538
Score = 161 bits (81), Expect = 7e-038
Identities = 300/373 (80%)
Strand = Plus / Plus
Query: 69 tcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgggcgg 128
||||||||||||||||||| ||||||| | ||||| ||||| |||||||||||||| |
Sbjct: 166 tcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgggcag 225
Query: 129 agtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctctggca 188
| | ||||||| |||||||| | | | ||| |||| | | ||| |||||||||||||
Sbjct: 226 aattaaacagggattaccagggtaacatggttccaaataaaagaacattcccctctggca 285
Query: 189 tcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagcgatg 248
|||||||||| || || || ||||||| || ||| | |||||||| |||||||| ||||
Sbjct: 286 tcaaggcgcttgcagattatgtgcacgggaaagggttgaagctggggatctacagtgatg 345
Query: 249 ctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgaggagcaggacg 308
||||||||| || ||||| | ||||||||||| || || || ||||| ||||| ||||
Sbjct: 346 ctgggacacaaacatgcagtaacaaaatgccaggatcgctcgatcacgaagagcaagacg 405
Query: 309 tgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaacgacgccg 368
||||||| ||| | || ||||| || ||||||||||| || ||||||||||| || || |
Sbjct: 406 tgaagactttcgcatcttggggaattgattatctgaagtatgacaactgcaatgatgctg 465
Query: 369 gcaggagcgtcatggagaggtatacgaagatgagcaacgctatgaagacgtatgggaagg 428
||||||| |||| || || || || | |||||||||||| |||| || || ||| ||
Sbjct: 466 gcaggagtgtcaacgaaagatacactaggatgagcaacgccatgaggaaatacgggcaga 525
Query: 429 gcatcttcttctc 441
||||||||||||
Sbjct: 526 acatcttcttctc 538
>gb|BI947500.1|BI947500 HVSMEl0005L02f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005L02f, mRNA sequence
Length = 509
Score = 159 bits (80), Expect = 3e-037
Identities = 287/356 (80%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
|||||||||||||| ||||| ||||||||| |||||| | |||||||||||||
Sbjct: 110 agctggaaccacttttactgcgacatcaacgagcgggtcatcagggagacagctgatgca 169
Query: 65 ctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgg 124
|| ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||||||
Sbjct: 170 ttgatcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgg 229
Query: 125 gcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctct 184
|| || | ||||||| ||||| || | | | ||| |||| | | ||| |||||||||
Sbjct: 230 gcagaattaaacagggattaccatggtaacatggttccaaataaaagaacattcccctct 289
Query: 185 ggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagc 244
|||||||||||||| || || || ||||||| || ||| | |||||||| ||||||||
Sbjct: 290 ggcatcaaggcgcttgcagattatgtgcacgggaaagggttgaagctggggatctacagt 349
Query: 245 gatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgaggagcag 304
||||||||||||| || ||||| | ||||||||| | || || || ||||| |||||
Sbjct: 350 gatgctgggacacaaacatgcagtaacaaaatgccatgatcgctcgatcacgaagagcac 409
Query: 305 gacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaa 360
||||||||||| ||| | || ||||| || ||||||||||| ||||||||||||||
Sbjct: 410 gacgtgaagactttcgcatcttggggaattgattatctgaagtacgacaactgcaa 465
>gb|BU972208.1|BU972208 HB20P08r BC Hordeum vulgare subsp. vulgare cDNA clone HB20P08
5-PRIME, mRNA sequence
Length = 384
Score = 149 bits (75), Expect = 3e-034
Identities = 299/374 (79%)
Strand = Plus / Plus
Query: 680 gccaaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccagcagacgatgggc 739
||||||||||| ||||||||||||||||| ||||| |||||| || |||||| | | |
Sbjct: 11 gccaaggctcctcttctgatcgggtgcgatgtgcgatcgatgaccccgcagacaaagacc 70
Query: 740 atactcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtgcagggaaag 799
||| ||||||| ||| |||||||| || ||||||||| ||||||| || |||||||||
Sbjct: 71 ataatcagcaatcaggaggtcatcgctgtcaaccaagatcgcctaggtgtccagggaaag 130
Query: 800 aaagtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaacaggaag 859
|| ||||| ||| || | |||||| ||||| || | ||||||| |||||| |||
Sbjct: 131 aaggtgcaatccgatggcggttnggaggtctgggccggactgctcagcggcaacagaaag 190
Query: 860 gccgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtggtcgagc 919
|| || ||||| |||||| ||||||| |||||||||||||||||||| || ||||| | |
Sbjct: 191 gcggtcgttctatggaacaggcaggggtaccaggcaaccatcaccgcacactggtcaaac 250
Query: 920 atcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcgtcattc 979
||||||| || | ||| | | || || ||||| |||||||||||||||||||| |||
Sbjct: 251 gtcgggcttccggcatccgcgtccgtgaccgctcgcgatctatgggcgcactcgtcgttc 310
Query: 980 tcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtatgtcttg 1039
|| ||||| || || ||||| || || ||| ||||| |||||||||||||| || ||
Sbjct: 311 tccgctcaggggcaactatccgcatcagtggggcctcatgactgcaagatgtacatcctg 370
Query: 1040 acgccgaactaact 1053
||||| || |||||
Sbjct: 371 acgccaaagtaact 384
>gb|AL510019.1|AL510019 AL510019 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03J20u 3',
mRNA sequence
Length = 640
Score = 133 bits (67), Expect = 2e-029
Identities = 298/374 (79%), Gaps = 1/374 (0%)
Strand = Plus / Minus
Query: 681 ccaaggctccgcttctgatc-gggtgcgacgtgcgcgcgatgagccagcagacgatgggc 739
|||||||||| |||||||| |||||||| ||||| |||||| || |||||| | | |
Sbjct: 562 ccaaggctcctnttctgatccgggtgcgatgtgcgatcgatgaccccgcagacaaagacc 503
Query: 740 atactcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtgcagggaaag 799
||| ||||||| ||| |||||||| || ||||||||| ||||||| || |||||||||
Sbjct: 502 ataatcagcaatcaggaggtcatcgctgtcaaccaagatcgcctaggtgtccagggaaag 443
Query: 800 aaagtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaacaggaag 859
|| ||||| ||| || |||||||| ||||| || | ||||||| |||||| |||
Sbjct: 442 aaggtgcaatccgatggcggtttggaggtctgggccggactgctcagcggcaacagaaag 383
Query: 860 gccgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtggtcgagc 919
|| || ||||| |||||| ||||||| |||||||||||||||||||| || ||||| | |
Sbjct: 382 gcggtcgttctatggaacaggcaggggtaccaggcaaccatcaccgcacactggtcaaac 323
Query: 920 atcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcgtcattc 979
||||||| || | ||| | | || || ||||| |||||||||||||||||||| |||
Sbjct: 322 gtcgggcttccggcatccgcgtccgtgaccgctcgcgatctatgggcgcactcgtcgttc 263
Query: 980 tcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtatgtcttg 1039
|| ||||| || || ||||| || || ||| ||||| |||||||||||||| || ||
Sbjct: 262 tccgctcaggggcaactatccgcatcagtggggcctcatgactgcaagatgtacatcctg 203
Query: 1040 acgccgaactaact 1053
||||| || |||||
Sbjct: 202 acgccaaagtaact 189
>gb|BI781084.2|BI781084 EBma03_SQ001_F24_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ001_F24 5', mRNA sequence
Length = 516
Score = 129 bits (65), Expect = 3e-028
Identities = 206/253 (81%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
||||||||||||||| ||||| ||||||||| |||||| | |||||||||||||
Sbjct: 257 agctggaaccacttctactgcgacatcaacgagcgggtcatcagggagacagctgatgca 316
Query: 65 ctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgg 124
|| ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||||||
Sbjct: 317 ttgatcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgg 376
Query: 125 gcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctct 184
|| || | ||||||| |||||||| | | | ||| |||| | | ||| |||||||||
Sbjct: 377 gcagaattaaacagggattaccagggtaacatggttccaaataaaagaacattcccctct 436
Query: 185 ggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagc 244
|||||||||||||| || || || ||||||| || ||| | |||||||| ||||||||
Sbjct: 437 ggcatcaaggcgcttgcagattatgtgcacgggaaagggttgaagctggggatctacagt 496
Query: 245 gatgctgggacac 257
|||||||||||||
Sbjct: 497 gatgctgggacac 509
>gb|AJ462496.1|AJ462496 AJ462496 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200026A03F1, mRNA sequence
Length = 360
Score = 119 bits (60), Expect = 2e-025
Identities = 237/296 (80%)
Strand = Plus / Plus
Query: 758 gtcatcgccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaat 817
|||||||| || ||||||||| ||||||| || ||||||||||| ||||| |||
Sbjct: 44 gtcatcgctgtcaaccaagatcgcctaggtgtccagggaaagaaggtgcaatccgatggc 103
Query: 818 ggcttggaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaac 877
|| |||||||| ||||| || | ||||||| |||||| ||||| || ||||| ||||||
Sbjct: 104 ggtttggaggtctgggccggactgctcagcggcaacagaaaggcggtcgttctatggaac 163
Query: 878 cggcagggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttcc 937
||||||| |||||||||||||||||||| || ||||| | | ||||||| || | |||
Sbjct: 164 aggcaggggtaccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatcc 223
Query: 938 actgctgtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagcta 997
| | || || ||||| |||||||||||||||||||| ||||| ||||| || || |||
Sbjct: 224 gcgtccgtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaacta 283
Query: 998 tcagcttcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| || || ||| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 284 tccgcatcagtggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 339
>gb|AJ462497.1|AJ462497 AJ462497 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200026A03F2, mRNA sequence
Length = 360
Score = 119 bits (60), Expect = 2e-025
Identities = 237/296 (80%)
Strand = Plus / Plus
Query: 758 gtcatcgccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaat 817
|||||||| || ||||||||| ||||||| || ||||||||||| ||||| |||
Sbjct: 44 gtcatcgctgtcaaccaagatcgcctaggtgtccagggaaagaaggtgcaatccgatggc 103
Query: 818 ggcttggaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaac 877
|| |||||||| ||||| || | ||||||| |||||| ||||| || ||||| ||||||
Sbjct: 104 ggtttggaggtctgggccggactgctcagcggcaacagaaaggcggtcgttctatggaac 163
Query: 878 cggcagggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttcc 937
||||||| |||||||||||||||||||| || ||||| | | ||||||| || | |||
Sbjct: 164 aggcaggggtaccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatcc 223
Query: 938 actgctgtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagcta 997
| | || || ||||| |||||||||||||||||||| ||||| ||||| || || |||
Sbjct: 224 gcgtccgtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaacta 283
Query: 998 tcagcttcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| || || ||| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 284 tccgcatcagtggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 339
>gb|BI949365.1|BI949365 HVSMEl0013I21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013I21f, mRNA sequence
Length = 965
Score = 113 bits (57), Expect = 2e-023
Identities = 204/253 (80%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
||||||||||||||| ||||| ||||||||| |||||| | |||||||||||||
Sbjct: 233 agctggaaccacttctactgcgacatcaacgagcgggtcatcagggagacagctgatgca 292
Query: 65 ctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgg 124
|| ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||||||
Sbjct: 293 ttgatcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgg 352
Query: 125 gcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctct 184
|| || | ||||||| |||||||| | | | ||| |||| | | ||| |||||||||
Sbjct: 353 gcagaattaaacagggattaccagggtaacatggttccaaataaaagaacattcccctct 412
Query: 185 ggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagc 244
|||||||||||||| || || || ||||||| || ||| | |||||||| ||||||
Sbjct: 413 ggcatcaaggcgcttgcagattatgtgcacgggaaagggttgaagctggggatctaccat 472
Query: 245 gatgctgggacac 257
|||||||||||||
Sbjct: 473 gatgctgggacac 485
>gb|AV929822.1|AV929822 AV929822 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd16l13 3', mRNA sequence
Length = 403
Score = 113 bits (57), Expect = 2e-023
Identities = 189/233 (81%)
Strand = Plus / Minus
Query: 821 ttggaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccgg 880
|||||||| ||||| || ||||||||| |||||| ||||| || ||||| |||||| ||
Sbjct: 397 ttggaggtctgggccggaccgctcagcggcaacagaaaggcggtcgttctatggaacagg 338
Query: 881 cagggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccact 940
||||| |||||||||||||||||||| || ||||| | | ||||||| || | ||| |
Sbjct: 337 caggggtaccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcg 278
Query: 941 gctgtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatca 1000
| || || ||||| |||||||||||||||||||| ||||| ||||| || || |||||
Sbjct: 277 tccgtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatcc 218
Query: 1001 gcttcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| || ||| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 217 gcatcagtggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 165
>gb|AV929823.1|AV929823 AV929823 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd16l14 3', mRNA sequence
Length = 403
Score = 113 bits (57), Expect = 2e-023
Identities = 189/233 (81%)
Strand = Plus / Minus
Query: 821 ttggaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccgg 880
|||||||| ||||| || ||||||||| |||||| ||||| || ||||| |||||| ||
Sbjct: 397 ttggaggtctgggccggaccgctcagcggcaacagaaaggcggtcgttctatggaacagg 338
Query: 881 cagggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccact 940
||||| |||||||||||||||||||| || ||||| | | ||||||| || | ||| |
Sbjct: 337 caggggtaccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcg 278
Query: 941 gctgtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatca 1000
| || || ||||| |||||||||||||||||||| ||||| ||||| || || |||||
Sbjct: 277 tccgtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatcc 218
Query: 1001 gcttcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| || ||| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 217 gcatcagtggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 165
>gb|CD663750.1|CD663750 UCRHV18_06cb01_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06cb01, mRNA sequence
Length = 470
Score = 113 bits (57), Expect = 2e-023
Identities = 189/233 (81%)
Strand = Plus / Minus
Query: 821 ttggaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccgg 880
|||||||| ||||| || ||||||||| |||||| ||||| || ||||| |||||| ||
Sbjct: 432 ttggaggtctgggccggaccgctcagcggcaacagaaaggcggtcgttctatggaacagg 373
Query: 881 cagggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccact 940
||||| |||||||||||||||||||| || ||||| | | ||||||| || | ||| |
Sbjct: 372 caggggtaccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcg 313
Query: 941 gctgtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatca 1000
| || || ||||| |||||||||||||||||||| ||||| ||||| || || |||||
Sbjct: 312 tccgtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatcc 253
Query: 1001 gcttcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| || ||| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 252 gcatcagtggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 200
>gb|CA021843.1|CA021843 HZ41E20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41E20
5-PRIME, mRNA sequence
Length = 353
Score = 107 bits (54), Expect = 9e-022
Identities = 197/245 (80%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
||||||||||||||| ||||| ||||||||| |||||| | |||||||||||||
Sbjct: 109 agctggaaccacttctactgcgacatcaacgagcgggtcatcagggagacagctgatgca 168
Query: 65 ctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgg 124
|| ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||||||
Sbjct: 169 ttgatcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgg 228
Query: 125 gcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctct 184
|| || | ||||||| |||||||| | | | ||| |||| | | ||| |||||||||
Sbjct: 229 gcagaattaaacagggattaccagggtaacatggttccaaataaaagaacattcccctct 288
Query: 185 ggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagc 244
|||||||||||||| || || || ||||||| || ||| | |||||| | ||||||||
Sbjct: 289 ggcatcaaggcgcttgcagattatgtgcacgggaaagggttgaagctgnggatctacagt 348
Query: 245 gatgc 249
|||||
Sbjct: 349 gatgc 353
>gb|BU983231.1|BU983231 HA28P16r HA Hordeum vulgare subsp. vulgare cDNA clone HA28P16
5-PRIME, mRNA sequence
Length = 490
Score = 101 bits (51), Expect = 6e-020
Identities = 153/187 (81%)
Strand = Plus / Plus
Query: 227 aagctgggcatctacagcgatgctgggacacggacgtgcagccagaaaatgccagggtca 286
|||||||| |||||||| ||||||||||||| || ||||| | ||||||||||| ||
Sbjct: 298 aagctggggatctacagtgatgctgggacacaaacatgcagtaacaaaatgccaggatcg 357
Query: 287 cttgaccacgaggagcaggacgtgaagacattctcgtcctggggtatcgattatctgaaa 346
|| || ||||| ||||| ||||||||||| ||| | || ||||| || |||||||||||
Sbjct: 358 ctcgatcacgaagagcaagacgtgaagactttcgcatcttggggaattgattatctgaag 417
Query: 347 tacgacaactgcaacgacgccggcaggagcgtcatggagaggtatacgaagatgagcaac 406
|| ||||||||||| || || |||||||| |||| || || || || | ||||||||||
Sbjct: 418 tatgacaactgcaatgatgctggcaggagtgtcaacgaaagatacactaggatgagcaac 477
Query: 407 gctatga 413
|| ||||
Sbjct: 478 gccatga 484
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
||||||||||||||| ||||| ||||||||| |||||| |||||||||||||
Sbjct: 81 agctggaaccacttctactgcgacatcaacgagcgggtcatcagttagacagctgatgca 140
Query: 65 ctggtcaacaccggtctggcgaa 87
|| |||||||||||||||||||
Sbjct: 141 ttgatcaacaccggtctggcgaa 163
>gb|CK122872.1|CK122872 BES1824106g24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G246 5-PRIME, mRNA sequence
Length = 615
Score = 95.6 bits (48), Expect = 4e-018
Identities = 170/211 (80%)
Strand = Plus / Plus
Query: 5 agctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatgcg 64
||||||||||||||| ||||| ||||||||| |||||| | |||||||||||||
Sbjct: 261 agctggaaccacttctactgcgacatcaacgagcgggtcatcagggagacagctgatgca 320
Query: 65 ctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgctgg 124
|| ||||||||||||||||||| ||||||| | ||||| ||||| ||||||||||||
Sbjct: 321 ttgatcaacaccggtctggcgaaattgggctataaatatgttaacatcgatgattgctgg 380
Query: 125 gcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccctct 184
|| || | ||||||| |||||||| | | | || |||| | | ||| |||||||||
Sbjct: 381 gcagaattaaacagggattaccagggtaacatgnttccaaataaaagaacattcccctct 440
Query: 185 ggcatcaaggcgctcgcggactacgtgcacg 215
|||||||||||||| || || || |||||||
Sbjct: 441 ggcatcaaggcgcttgcagattatgtgcacg 471
>gb|AV924730.1|AV924730 AV924730 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd16l14 5', mRNA sequence
Length = 435
Score = 87.7 bits (44), Expect = 9e-016
Identities = 180/225 (80%), Gaps = 1/225 (0%)
Strand = Plus / Plus
Query: 830 tgggctgggccgctcagcaacaacaggaaggccgtggttctctgg-aaccggcagggata 888
||||| || ||||||||| |||||| || || || ||||| ||| ||| ||||||| ||
Sbjct: 14 tgggccggnccgctcagcggcaacagnaangcggtcgttctatggcaacaggcaggggta 73
Query: 889 ccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgctgtcac 948
|||||||||||||||||| || ||||| | | ||||||| || | ||| | | || ||
Sbjct: 74 ccaggcaaccatcaccgcacactggtcaaacgtcgggcttccggcatccgcgtccgtgac 133
Query: 949 tgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcggt 1008
||||| |||||||||||||||||||| ||||| ||||| || || ||||| || || ||
Sbjct: 134 cgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgcatcagt 193
Query: 1009 gccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 194 ggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 238
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1270 ttgtaacgagagttgcagcaataaaatt 1297
|||||||| ||||||||||||||||||
Sbjct: 386 ttgtaacggaagttgcagcaataaaatt 413
>gb|AL509965.1|AL509965 AL509965 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03H07u 3',
mRNA sequence
Length = 494
Score = 85.7 bits (43), Expect = 3e-015
Identities = 185/233 (79%)
Strand = Plus / Minus
Query: 821 ttggaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccgg 880
|||||| | ||||| || | ||||||| |||||| ||||| || ||| | |||||| ||
Sbjct: 443 ttggagntctgggccggactgctcagcggcaacagaaaggcggtcgttntatggaacagg 384
Query: 881 cagggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccact 940
||||| ||||||||| |||||||||| || ||||| | | ||||||| || | ||| |
Sbjct: 383 caggggtaccaggcagccatcaccgcacactggtcaaacgtcgggcttccggcatccgcg 324
Query: 941 gctgtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatca 1000
| || || ||||| |||||||||||||||||||| ||||| ||||| || || |||||
Sbjct: 323 tccgtgaccgctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatcc 264
Query: 1001 gcttcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
|| || ||| ||||| |||||||||||||| || ||||||| || |||||
Sbjct: 263 gcatcagtggggcctcatgactgcaagatgtacatcctgacgccaaagtaact 211
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1270 ttgtaacgagagttgcagcaataaaatt 1297
|||||||| ||||||||||||||||||
Sbjct: 63 ttgtaacggaagttgcagcaataaaatt 36
>gb|AV924729.1|AV924729 AV924729 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd16l13 5', mRNA sequence
Length = 405
Score = 83.8 bits (42), Expect = 1e-014
Identities = 165/205 (80%), Gaps = 1/205 (0%)
Strand = Plus / Plus
Query: 850 caacaggaaggccgtggttctctgg-aaccggcagggataccaggcaaccatcaccgcgc 908
|||||| ||||| || ||||| ||| ||| ||||||| |||||||||||||||||||| |
Sbjct: 4 caacagnaaggcggtcgttctatggnaacaggcaggggtaccaggcaaccatcaccgcac 63
Query: 909 agtggtcgagcatcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgc 968
| ||||| | | ||||||| || | ||| | | || || ||||| |||||||||||||
Sbjct: 64 actggtcaaacgtcgggcttccggcatccgcgtccgtgaccgctcgcgatctatgggcgc 123
Query: 969 actcgtcattctcggctcaaggccagctatcagcttcggtgccacctcacgactgcaaga 1028
||||||| ||||| ||||| || || ||||| || || ||| ||||| ||||||||||
Sbjct: 124 actcgtcgttctccgctcaggggcaactatccgcatcagtggggcctcatgactgcaaga 183
Query: 1029 tgtatgtcttgacgccgaactaact 1053
|||| || ||||||| || |||||
Sbjct: 184 tgtacatcctgacgccaaagtaact 208
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1270 ttgtaacgagagttgcagcaataaaatt 1297
|||||||| ||||||||||||||||||
Sbjct: 356 ttgtaacggaagttgcagcaataaaatt 383
>gb|BQ765587.1|BQ765587 EBro03_SQ007_I16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_I16 5', mRNA sequence
Length = 338
Score = 71.9 bits (36), Expect = 5e-011
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 950 gctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcggtg 1009
||||| |||||||||||||||||||| ||||| |||||||| || ||||| || || |||
Sbjct: 47 gctcgcgatctatgggcgcactcgtcgttctccgctcaagggcaactatccgcatcagtg 106
Query: 1010 ccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
||||| |||||||||||||| || ||||||| || |||||
Sbjct: 107 gggcctcatgactgcaagatgtacatcctgacgccaaagtaact 150
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1270 ttgtaacgagagttgcagcaataaaatt 1297
|||||||| ||||||||||||||||||
Sbjct: 298 ttgtaacggaagttgcagcaataaaatt 325
>gb|BF266542.2|BF266542 HV_CEa0015G15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0015G15f, mRNA sequence
Length = 562
Score = 67.9 bits (34), Expect = 8e-010
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 191 aaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagcgatgct 250
||||| |||||||||||||| ||| ||||||||||||||| ||||||||| |||||||
Sbjct: 447 aaggcactcgcggactacgtccacagcaaggggctcaagctcggcatctactccgatgct 506
Query: 251 gg 252
||
Sbjct: 507 gg 508
>gb|BF263757.2|BF263757 HV_CEa0007J08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007J08f, mRNA sequence
Length = 607
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 192 aggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagcgatgctg 251
|||| |||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||
Sbjct: 445 aggcactcgcggactacgtccacagcaaggggctcaagctcggcatctactccgatgctg 504
Query: 252 g 252
|
Sbjct: 505 g 505
>gb|CB879315.1|CB879315 HP11L15T HP Hordeum vulgare subsp. vulgare cDNA clone HP11L15
5-PRIME, mRNA sequence
Length = 600
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 192 aggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagcgatgctg 251
|||| |||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||
Sbjct: 24 aggcactcgcggactacgtccacagcaaggggctcaagctcggcatctactccgatgctg 83
Query: 252 g 252
|
Sbjct: 84 g 84
Score = 54.0 bits (27), Expect = 1e-005
Identities = 99/123 (80%)
Strand = Plus / Plus
Query: 590 ggcgggtggaacgatcctgacatgcttgaggtgggcaacggcggcatgtccgaggcggag 649
||||| |||||||| || |||||||| |||||||||||||| || ||| || | | |||
Sbjct: 422 ggcggctggaacgaccccgacatgctggaggtgggcaacggagggatgaccaacgacgag 481
Query: 650 taccgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcgggtgcgac 709
||| | |||||||||||||||||| || | ||||| || || | ||||||||||||
Sbjct: 482 tacatcgtgcacttcagcatctgggcgatctcaaaggcgcctctgatcatcgggtgcgac 541
Query: 710 gtg 712
|||
Sbjct: 542 gtg 544
>gb|CB879919.1|CB879919 HP11C13T HP Hordeum vulgare subsp. vulgare cDNA clone HP11C13
5-PRIME, mRNA sequence
Length = 598
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 192 aggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctacagcgatgctg 251
|||| |||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||
Sbjct: 25 aggcactcgcggactacgtccacagcaaggggctcaagctcggcatctactccgatgctg 84
Query: 252 g 252
|
Sbjct: 85 g 85
Score = 54.0 bits (27), Expect = 1e-005
Identities = 99/123 (80%)
Strand = Plus / Plus
Query: 590 ggcgggtggaacgatcctgacatgcttgaggtgggcaacggcggcatgtccgaggcggag 649
||||| |||||||| || |||||||| |||||||||||||| || ||| || | | |||
Sbjct: 423 ggcggctggaacgaccccgacatgctggaggtgggcaacggagggatgaccaacgacgag 482
Query: 650 taccgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcgggtgcgac 709
||| | |||||||||||||||||| || | ||||| || || | ||||||||||||
Sbjct: 483 tacatcgtgcacttcagcatctgggcgatctcaaaggcgcctctgatcatcgggtgcgac 542
Query: 710 gtg 712
|||
Sbjct: 543 gtg 545
>gb|BF253410.3|BF253410 HVSMEf0001F14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0001F14f, mRNA sequence
Length = 356
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 950 gctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcggtg 1009
||||| |||||||||||||||||||| ||||| ||||| || || ||||| || || |||
Sbjct: 48 gctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgcatcagtg 107
Query: 1010 ccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
||||| |||||||||||||| || ||||||| || |||||
Sbjct: 108 gggcctcatgactgcaagatgtacatcctgacgccaaagtaact 151
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1270 ttgtaacgagagttgcagcaataaaatt 1297
|||||||| ||||||||||||||||||
Sbjct: 299 ttgtaacggaagttgcagcaataaaatt 326
>gb|AJ435128.1|AJ435128 AJ435128 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200087B09F1, mRNA sequence
Length = 332
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 950 gctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcggtg 1009
||||| |||||||||||||||||||| ||||| ||||| || || ||||| || || |||
Sbjct: 21 gctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgcatcagtg 80
Query: 1010 ccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
||||| |||||||||||||| || ||||||| || |||||
Sbjct: 81 gggcctcatgactgcaagatgtacatcctgacgccaaagtaact 124
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1270 ttgtaacgagagttgcagcaataaaatt 1297
|||||||| ||||||||||||||||||
Sbjct: 272 ttgtaacggaagttgcagcaataaaatt 299
>gb|BJ458546.1|BJ458546 BJ458546 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak32h01 3', mRNA sequence
Length = 261
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 950 gctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcggtg 1009
||||| |||||||||||||||||||| ||||| ||||| || || ||||| || || |||
Sbjct: 250 gctcgcgatctatgggcgcactcgtcgttctccgctcaggggcaactatccgcatcagtg 191
Query: 1010 ccacctcacgactgcaagatgtatgtcttgacgccgaactaact 1053
||||| |||||||||||||| || ||||||| || |||||
Sbjct: 190 gggcctcatgactgcaagatgtacatcctgacgccaaagtaact 147
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 120,836
Number of Sequences: 312970
Number of extensions: 120836
Number of successful extensions: 33374
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33168
Number of HSP's gapped (non-prelim): 168
length of query: 1341
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1322
effective length of database: 169,188,109
effective search space: 223666680098
effective search space used: 223666680098
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)