BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ4a11.xg.3.2
(2249 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ464842.1|BJ464842 BJ464842 K. Sato unpublished cDNA li... 502 e-140
gb|BQ465790.1|BQ465790 HU04L04r HU Hordeum vulgare subsp. v... 496 e-138
gb|CA012277.1|CA012277 HT04P11r HT Hordeum vulgare subsp. v... 468 e-130
gb|CA012050.1|CA012050 HT04E19r HT Hordeum vulgare subsp. v... 301 5e-080
gb|AV922784.1|AV922784 AV922784 K. Sato unpublished cDNA li... 246 3e-063
gb|AV925225.1|AV925225 AV925225 K. Sato unpublished cDNA li... 246 3e-063
gb|AV930376.1|AV930376 AV930376 K. Sato unpublished cDNA li... 194 9e-048
gb|AV927504.1|AV927504 AV927504 K. Sato unpublished cDNA li... 188 5e-046
gb|BQ663940.1|BQ663940 HU04L04u HU Hordeum vulgare subsp. v... 84 2e-014
gb|CA013424.1|CA013424 HT08G16r HT Hordeum vulgare subsp. v... 74 2e-011
gb|AL501779.1|AL501779 AL501779 Hordeum vulgare Barke roots... 54 2e-005
gb|AJ432147.1|AJ432147 AJ432147 S00002 Hordeum vulgare subs... 54 2e-005
gb|BJ467136.1|BJ467136 BJ467136 K. Sato unpublished cDNA li... 40 0.31
>gb|BJ464842.1|BJ464842 BJ464842 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36e10 5', mRNA sequence
Length = 643
Score = 502 bits (253), Expect = e-140
Identities = 532/625 (85%)
Strand = Plus / Plus
Query: 735 ggtgataaagtatttcttgataaggctaaagatattacagatcgactcttacctgcttgg 794
||||| ||||||||||| || ||||| || |||||| | |||||| | |||||||| |||
Sbjct: 19 ggtgacaaagtatttctcgaaaaggcgaaggatattgctgatcgattgttacctgcctgg 78
Query: 795 gatacaacatctggcatcccttataatagaataaacctagctcatggacgagcccataat 854
|||||||||||||| |||||||||||| ||| ||| |||||||||| ||||| ||||||
Sbjct: 79 gatacaacatctggtatcccttataattcaatcaacttagctcatggccgagctcataat 138
Query: 855 cctggatggactaacggtgatagtatccttgcagattctggtacggagcaacttgaattc 914
||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 139 tttggatggaccaacggtgatagtatccttgcggattctggaacggagcaacttgaattt 198
Query: 915 atagctctttcacagaggactggagatcccaaataccagcagaaggcggagaacgtcatt 974
|||||| | || ||||| || |||||||| || || || | ||||| || || ||||||
Sbjct: 199 atagctttgtcccagagaaccggagatcctaagtatcaactaaaggcagaaaatgtcatt 258
Query: 975 aaacagcttcaaaagatatatccaagtgatggtttactgcctatttacataaatcctcat 1034
||||||||| ||||||||||||||||| || ||||| ||||| || |||||||||||
Sbjct: 259 cgacagcttcagaagatatatccaagtgacggcttacttcctatctatataaatcctcag 318
Query: 1035 tctgggacagcatcatactcaactatcacatttggtgctatgggagacagcttctacgaa 1094
|| || ||||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 319 tcaggacaagcatcatactcaacaataacattcggtgctatgggagatagcttctacgag 378
Query: 1095 tatttgctcaaggtctggatccaggggaataaaactgagcatgtaaaacactacagacaa 1154
|| ||||||||||||||||| |||||||||||||| ||| |||||||| |||||||||
Sbjct: 379 tacttgctcaaggtctggattcaggggaataaaaccgagagcgtaaaacattacagacaa 438
Query: 1155 atgtgggagacatcaatggaaggtctattaagtttaaccaagaaaactacaccatctaat 1214
|||||||||||||||||||||||| || |||| || |||| | |||||||||| ||||||
Sbjct: 439 atgtgggagacatcaatggaaggtttaataagcttgaccaggcaaactacaccctctaat 498
Query: 1215 tactactacatttgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgct 1274
||| || || || || || | |||||||||||||||| |||||||||||||||||||
Sbjct: 499 tacacatatatctgcgagaaaagtggtggctcgttgtctcacaagatggatgaacttgca 558
Query: 1275 tgctttgctcctggtatgctggccttaggtgcctctggttacgggccagaaaaatcagag 1334
||||| || |||||||||||||| | || ||||||||||| ||||| |||||| | |
Sbjct: 559 tgcttcgcccctggtatgctggcacttggagcctctggttatgggcctgaaaaagctaaa 618
Query: 1335 caaattatgaatcttgcaaaagagc 1359
|||||||||||||||||| ||||||
Sbjct: 619 caaattatgaatcttgcagaagagc 643
>gb|BQ465790.1|BQ465790 HU04L04r HU Hordeum vulgare subsp. vulgare cDNA clone HU04L04
5-PRIME, mRNA sequence
Length = 597
Score = 496 bits (250), Expect = e-138
Identities = 491/570 (86%), Gaps = 11/570 (1%)
Strand = Plus / Plus
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||| ||||| ||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 19 tcgtcctcctcctcgtcgggggcgtggcgctacctcaaccccgcctactacctcaagcgg 78
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 79 cccaagcgcctcgcgctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggac 138
Query: 264 cgccagtcgctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaat 323
||||| |||||||||||||||||||||||||||||||||| |||| || |||| |||||
Sbjct: 139 cgccaatcgctcgtcagcgagtacgagtctgagatttcccaattaaaaaatgaaataaac 198
Query: 324 cggttgcatgaccagctaagaaaggctggagttaatctggatgaaaatccagtagtaagc 383
| |||||||| ||| |||| |||||||| || | ||||| |||||||| |||
Sbjct: 199 cagttgcatggtcagttaaggaaggctggtattcaactggaagaaaatcc-------agc 251
Query: 384 aacaagaattcc-agaaaagatcttgtagtagaaattgatcctgtcaataatgaaaaacg 442
|| ||||||| |||||||||||||||| | ||||||||| | |||||||||| |
Sbjct: 252 aattggaattcccagaaaagatcttgtag---agattgatcctattaataatgaaaggag 308
Query: 443 ggaaaaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggg 502
|||||| || || ||||| ||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 309 ggaaaaggtcaaggaggctatgctccatgcctggaattcctatgtaaagtatgcatgggg 368
Query: 503 aatggacgagcttcagccacaatcgaagaatggtatcaacagctttggtggtcttggagc 562
|||||| ||||||||||| ||||| ||||||||| | || |||||||||||||| || ||
Sbjct: 369 aatggatgagcttcagccgcaatcaaagaatggtgttaatagctttggtggtctcggggc 428
Query: 563 aacccttgttgactcacttgataccctatacataatgggcctgaaagatgaatttcagaa 622
||||||||| ||||| || ||||| || || ||||||||||| | |||||| ||||||||
Sbjct: 429 aacccttgtggactcgctagatacactgtatataatgggcctaagagatgagtttcagaa 488
Query: 623 agctagagactgggtggcggagtcattagactttgacaaggattatgatgcgagtgtttt 682
||| |||||||||||||| ||||||||| |||||||||||||||||| || || |||||
Sbjct: 489 agccagagactgggtggcagagtcattaagctttgacaaggattatgacgcaagcgtttt 548
Query: 683 tgaaacgaccataagggttgttggaggtct 712
||||||||||||||||||||||||||||||
Sbjct: 549 tgaaacgaccataagggttgttggaggtct 578
>gb|CA012277.1|CA012277 HT04P11r HT Hordeum vulgare subsp. vulgare cDNA clone HT04P11
5-PRIME, mRNA sequence
Length = 527
Score = 468 bits (236), Expect = e-130
Identities = 440/508 (86%)
Strand = Plus / Plus
Query: 411 gtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaagaggcaatgctccat 470
||||| ||||||||| | |||||||||| ||||||| || || ||||| |||||||||
Sbjct: 20 gtagagattgatcctattaataatgaaaggagggaaaaggtcaaggaggctatgctccat 79
Query: 471 gcttggaattcttatgttaagtatgcctggggaatggacgagcttcagccacaatcgaag 530
|| |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 80 gcctggaattcctatgtaaagtatgcatggggaatggatgagcttcagccgcaatcaaag 139
Query: 531 aatggtatcaacagctttggtggtcttggagcaacccttgttgactcacttgatacccta 590
|||||| | || |||||||||||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 140 aatggtgttaatagctttggtggtctcggggcaacccttgtggactcgctagatacactg 199
Query: 591 tacataatgggcctgaaagatgaatttcagaaagctagagactgggtggcggagtcatta 650
|| ||||||||||| | |||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 200 tatataatgggcctaagagatgagtttcagaaagccagagactgggtggcagagtcatta 259
Query: 651 gactttgacaaggattatgatgcgagtgtttttgaaacgaccataagggttgttggaggt 710
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct: 260 agctttgacaaggattatgacgcaagcgtttttgaaacgaccataagggttgttggaggt 319
Query: 711 ctgcttagttcatacgatctatctggtgataaagtatttcttgataaggctaaagatatt 770
|| || ||| |||| ||| | || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 320 ctcctcagtgcatatgatatgtccggtgacaaagtatttctcgaaaaggcgaaggatatt 379
Query: 771 acagatcgactcttacctgcttgggatacaacatctggcatcccttataatagaataaac 830
| |||||| | |||||||| ||||||||||||||||| |||||||||||| ||| |||
Sbjct: 380 gctgatcgattgttacctgcctgggatacaacatctggtatcccttataattcaatcaac 439
Query: 831 ctagctcatggacgagcccataatcctggatggactaacggtgatagtatccttgcagat 890
|||||||||| ||||| |||||| ||||||||| |||||||||||||||||||| |||
Sbjct: 440 ttagctcatggccgagctcataattttggatggaccaacggtgatagtatccttgcggat 499
Query: 891 tctggtacggagcaacttgaattcatag 918
||||| ||||||||||||||||| ||||
Sbjct: 500 tctggaacggagcaacttgaatttatag 527
>gb|CA012050.1|CA012050 HT04E19r HT Hordeum vulgare subsp. vulgare cDNA clone HT04E19
5-PRIME, mRNA sequence
Length = 496
Score = 301 bits (152), Expect = 5e-080
Identities = 327/384 (85%), Gaps = 11/384 (2%)
Strand = Plus / Plus
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||| ||||| ||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 123 tcgtcctcctcctcgtcgggggcgtggcgctacctcaaccccgcctactacctcaagcgg 182
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 183 cccaagcgcctcgcgctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggac 242
Query: 264 cgccagtcgctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaat 323
||||| |||||||||||||||||||||||||||||||||| |||| || |||| |||||
Sbjct: 243 cgccaatcgctcgtcagcgagtacgagtctgagatttcccaattaaaaaatgaaataaac 302
Query: 324 cggttgcatgaccagctaagaaaggctggagttaatctggatgaaaatccagtagtaagc 383
| |||||||| ||| |||| |||||||| || | ||||| |||||||| |||
Sbjct: 303 cagttgcatggtcagttaaggaaggctggtattcaactggaagaaaatcc-------agc 355
Query: 384 aacaagaattcc-agaaaagatcttgtagtagaaattgatcctgtcaataatgaaaaacg 442
|| ||||||| |||||||||||| ||||| ||||||||| | |||||||||| |
Sbjct: 356 aattggaattcccagaaaagatctt---gtagagattgatcctattaataatgaaaggag 412
Query: 443 ggaaaaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggg 502
|||||| || || ||||| ||||||||||| |||||||| ||||| |||||||| |||||
Sbjct: 413 ggaaaaggtcaaggaggctatgctccatgcctggaattcctatgtaaagtatgcatgggg 472
Query: 503 aatggacgagcttcagccacaatc 526
|||||| ||||||||||| |||||
Sbjct: 473 aatggatgagcttcagccgcaatc 496
>gb|AV922784.1|AV922784 AV922784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f24 5', mRNA sequence
Length = 643
Score = 246 bits (124), Expect = 3e-063
Identities = 205/232 (88%)
Strand = Plus / Plus
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||| ||||| ||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 146 tcgtcctcctcctcgtcgggggcgtggcgctacctcaaccccgcctactacctcaagcgg 205
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 206 cccaagcgcctcgcgctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggac 265
Query: 264 cgccagtcgctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaat 323
||||| |||||||||||||||||||||||||||||||||| |||| || |||| |||||
Sbjct: 266 cgccaatcgctcgtcagcgagtacgagtctgagatttcccaattaaaaaatgaaataaac 325
Query: 324 cggttgcatgaccagctaagaaaggctggagttaatctggatgaaaatccag 375
| |||||||| ||| |||| |||||||| || | ||||| ||||||||||
Sbjct: 326 cagttgcatggtcagttaaggaaggctggtattcaactggaagaaaatccag 377
Score = 186 bits (94), Expect = 2e-045
Identities = 169/194 (87%)
Strand = Plus / Plus
Query: 1558 aggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaaca 1617
||||||||||||| ||||||||||||| ||||||||| |||||||| || |||||||| |
Sbjct: 450 aggcatttgagaaaaactcccgcatagcatctggatacgtgggactaagggatgtgaata 509
Query: 1618 ctggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgt 1677
||||||||| ||| ||| ||||||||| |||||||| ||||||||||| |||||||| |
Sbjct: 510 gtggtgaaaaggacgacaagatgcagagcttcttcctagcagagacgctcaagtacctct 569
Query: 1678 acctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaag 1737
| || | ||||||||||| |||||| |||| ||||| |||||||| ||||| |||||||
Sbjct: 570 atctgttgttctcccctccgtcagtcgtatctttcgatgagtgggtcttcaacactgaag 629
Query: 1738 ctcacccattgaga 1751
||||||| ||||||
Sbjct: 630 ctcaccctttgaga 643
>gb|AV925225.1|AV925225 AV925225 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e21 5', mRNA sequence
Length = 563
Score = 246 bits (124), Expect = 3e-063
Identities = 205/232 (88%)
Strand = Plus / Plus
Query: 144 tcgtcttcctcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcgg 203
||||| ||||| ||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 135 tcgtcctcctcctcgtcgggggcgtggcgctacctcaaccccgcctactacctcaagcgg 194
Query: 204 cccaagcgcctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggac 263
||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 195 cccaagcgcctcgcgctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggac 254
Query: 264 cgccagtcgctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaat 323
||||| |||||||||||||||||||||||||||||||||| |||| || |||| |||||
Sbjct: 255 cgccaatcgctcgtcagcgagtacgagtctgagatttcccaattaaaaaatgaaataaac 314
Query: 324 cggttgcatgaccagctaagaaaggctggagttaatctggatgaaaatccag 375
| |||||||| ||| |||| |||||||| || | ||||| ||||||||||
Sbjct: 315 cagttgcatggtcagttaaggaaggctggtattcaactggaagaaaatccag 366
Score = 131 bits (66), Expect = 1e-028
Identities = 105/118 (88%)
Strand = Plus / Plus
Query: 1558 aggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaaca 1617
||||||||||||| ||||||||||||| ||||||||| |||||||| || |||||||| |
Sbjct: 439 aggcatttgagaaaaactcccgcatagcatctggatacgtgggactaagggatgtgaata 498
Query: 1618 ctggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacct 1675
||||||||| ||| ||| ||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 499 gtggtgaaaaggacgacaagatgcagagcttcttcctagcagagacgctcaagtacct 556
>gb|AV930376.1|AV930376 AV930376 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd22e21 3', mRNA sequence
Length = 630
Score = 194 bits (98), Expect = 9e-048
Identities = 176/202 (87%)
Strand = Plus / Minus
Query: 1558 aggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaaca 1617
||||||||||||| ||||||||||||| ||||||||| |||||||| || |||||||| |
Sbjct: 621 aggcatttgagaaaaactcccgcatagcatctggatacgtgggactaagggatgtgaata 562
Query: 1618 ctggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgt 1677
||||||||| ||| ||| ||||||||| |||||||| ||||||||||| |||||||| |
Sbjct: 561 gtggtgaaaaggacgacaagatgcagagcttcttcctagcagagacgctcaagtacctct 502
Query: 1678 acctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaag 1737
| || | ||||||||||| |||||| |||| ||||| |||||||| ||||| |||||||
Sbjct: 501 atctgttgttctcccctccgtcagtcgtatctttcgatgagtgggtcttcaacactgaag 442
Query: 1738 ctcacccattgagaattgttcc 1759
||||||| |||||||| |||||
Sbjct: 441 ctcaccctttgagaatcgttcc 420
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 2102 tgtccatatgttgttgctttcctgggg 2128
|||||||||||||||||||||||||||
Sbjct: 51 tgtccatatgttgttgctttcctgggg 25
>gb|AV927504.1|AV927504 AV927504 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd2f24 3', mRNA sequence
Length = 698
Score = 188 bits (95), Expect = 5e-046
Identities = 175/202 (86%)
Strand = Plus / Minus
Query: 1558 aggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaaca 1617
||||||||||||| ||||||||||||| ||||||||| |||||||| || ||||||| |
Sbjct: 622 aggcatttgagaaaaactcccgcatagcatctggatacgtgggactaaggnatgtgaata 563
Query: 1618 ctggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgt 1677
||||||||| ||| ||| ||||||||| |||||||| ||||||||||| |||||||| |
Sbjct: 562 gtggtgaaaaggacgacaagatgcagagcttcttcctagcagagacgctcaagtacctct 503
Query: 1678 acctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaag 1737
| || | ||||||||||| |||||| |||| ||||| |||||||| ||||| |||||||
Sbjct: 502 atctgttgttctcccctccgtcagtcgtatctttcgatgagtgggtcttcaacactgaag 443
Query: 1738 ctcacccattgagaattgttcc 1759
||||||| |||||||| |||||
Sbjct: 442 ctcaccctttgagaatcgttcc 421
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 2102 tgtccatatgttgttgctttcctgggg 2128
|||||||||||||||||||||||||||
Sbjct: 52 tgtccatatgttgttgctttcctgggg 26
>gb|BQ663940.1|BQ663940 HU04L04u HU Hordeum vulgare subsp. vulgare cDNA clone HU04L04
3-PRIME, mRNA sequence
Length = 559
Score = 83.8 bits (42), Expect = 2e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1686 ttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagctcaccca 1745
||||||||||| |||||| |||| ||||| |||||||| ||||| ||||||||||||||
Sbjct: 537 ttctcccctccgtcagtcgtatctttcgatgagtgggtcttcaacactgaagctcaccct 478
Query: 1746 ttgagaattgttcc 1759
|||||||| |||||
Sbjct: 477 ttgagaatcgttcc 464
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 2102 tgtccatatgttgttgctttcctgggg 2128
|||||||||||||||||||||||||||
Sbjct: 96 tgtccatatgttgttgctttcctgggg 70
>gb|CA013424.1|CA013424 HT08G16r HT Hordeum vulgare subsp. vulgare cDNA clone HT08G16
5-PRIME, mRNA sequence
Length = 534
Score = 73.8 bits (37), Expect = 2e-011
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 1691 ccctccatcagtcatatccttcgacgagtgggttttcaatactgaagctcacccattgag 1750
|||||| |||||| |||| ||||| |||||||| ||||| |||||||||||||| |||||
Sbjct: 534 ccctccgtcagtcgtatctttcgatgagtgggtcttcaacactgaagctcaccctttgag 475
Query: 1751 aattgttcc 1759
||| |||||
Sbjct: 474 aatcgttcc 466
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 2102 tgtccatatgttgttgctttcctgggg 2128
|||||||||||||||||||||||||||
Sbjct: 97 tgtccatatgttgttgctttcctgggg 71
>gb|AL501779.1|AL501779 AL501779 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05F14u 3', mRNA sequence
Length = 494
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 2102 tgtccatatgttgttgctttcctgggg 2128
|||||||||||||||||||||||||||
Sbjct: 111 tgtccatatgttgttgctttcctgggg 85
>gb|AJ432147.1|AJ432147 AJ432147 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200040A07F1, mRNA sequence
Length = 347
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 2102 tgtccatatgttgttgctttcctgggg 2128
|||||||||||||||||||||||||||
Sbjct: 249 tgtccatatgttgttgctttcctgggg 275
>gb|BJ467136.1|BJ467136 BJ467136 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36e10 3', mRNA sequence
Length = 441
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2102 tgtccatatgttgttgcttt 2121
||||||||||||||||||||
Sbjct: 27 tgtccatatgttgttgcttt 8
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,533
Number of Sequences: 312970
Number of extensions: 198533
Number of successful extensions: 51179
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51145
Number of HSP's gapped (non-prelim): 32
length of query: 2249
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2229
effective length of database: 168,875,139
effective search space: 376422684831
effective search space used: 376422684831
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)