BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF36h01.yg.2.1
(689 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-gluc... 549 e-155
gb|BE603205.3|BE603205 HVSMEh0102H23f Hordeum vulgare 5-45 ... 434 e-120
gb|BJ448471.1|BJ448471 BJ448471 K. Sato unpublished cDNA li... 418 e-115
gb|AW982666.3|AW982666 HVSMEg0003O04f Hordeum vulgare pre-a... 355 1e-096
gb|BG418753.1|BG418753 HVSMEk0024E15f Hordeum vulgare testa... 301 2e-080
gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. v... 301 2e-080
gb|AV914917.1|AV914917 AV914917 K. Sato unpublished cDNA li... 285 9e-076
gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA li... 278 2e-073
gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA li... 214 3e-054
gb|AL508501.1|AL508501 AL508501 Hordeum vulgare Barke devel... 204 3e-051
gb|AV909996.1|AV909996 AV909996 K. Sato unpublished cDNA li... 200 4e-050
gb|CK123474.1|CK123474 BES1824104c11 BES1824 Hordeum vulgar... 200 4e-050
gb|BG365744.1|BG365744 HVSMEi0004A10f Hordeum vulgare 20 DA... 186 6e-046
gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-a... 168 2e-040
gb|AV914894.1|AV914894 AV914894 K. Sato unpublished cDNA li... 135 2e-030
gb|BE455799.3|BE455799 HVSMEg0015D01f Hordeum vulgare pre-a... 117 5e-025
gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 ... 103 8e-021
gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, red... 92 3e-017
gb|BI956352.1|BI956352 HVSMEn0002L24f Hordeum vulgare rachi... 76 2e-012
gb|BF260719.2|BF260719 HVSMEf0022M05f Hordeum vulgare seedl... 74 7e-012
gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthe... 74 7e-012
gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa... 66 2e-009
gb|AV925024.1|AV925024 AV925024 K. Sato unpublished cDNA li... 64 6e-009
gb|BU967340.1|BU967340 HB03P20r BC Hordeum vulgare subsp. v... 52 2e-005
gb|BU979160.1|BU979160 HA15F07r HA Hordeum vulgare subsp. v... 42 0.024
gb|AV925017.1|AV925017 AV925017 K. Sato unpublished cDNA li... 38 0.37
gb|AV925025.1|AV925025 AV925025 K. Sato unpublished cDNA li... 38 0.37
gb|BU983204.1|BU983204 HA28O05r HA Hordeum vulgare subsp. v... 38 0.37
>dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-glucanase Cel1, complete cds
Length = 2442
Score = 549 bits (277), Expect = e-155
Identities = 460/521 (88%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 1541 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 1482
Query: 108 attaatcctcctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacg 167
|| | ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1481 atcagtcctcctttagtgaagttgaatgaattgaatactggtaaatatgagcacatgaca 1422
Query: 168 ttgtcggtttggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttagg 227
||||| |||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||
Sbjct: 1421 ttgtcagtttggttgtggaatgtccttaatatttcttcataaggataccctgggcttagg 1362
Query: 228 aagagtcgcagcctgctgagaagaacctgagctcctggaagtttgtcatcccaggtaaac 287
||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct: 1361 aagagccgcaacctgctgagaagaacctgagatcctggaagcttgtcatcccaggtgaac 1302
Query: 288 actccgtagtttggacttccaaaccagtatgctccagcgtgcttcgccattcccggggct 347
||||| ||||||||||| |||| |||| | || || |||||||| ||||| || || ||
Sbjct: 1301 actccatagtttggactaccaatccagaacgcccccgcgtgcttggccatccctggagcg 1242
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 1241 gtggcgatcgtgaggtacgatgtgttccccgtggcgaagtacatccacgcgccaccccac 1182
Query: 408 acgaactcgtcccagtagctggtggagttgtagaagatggcctggtcagatccgttgggg 467
|| ||||| ||||||||||||||||| |||||||| | | ||||||||| || ||||||
Sbjct: 1181 acaaactcatcccagtagctggtggaattgtagaacagcgactggtcagagccattgggg 1122
Query: 468 ctgtatcgcccacgctgcagcctgccgaacttgtacagggccttggcgcccttgacgagc 527
||||||||||| ||||||||||| |||||||||||||| |||||||| || | ||| |||
Sbjct: 1121 ctgtatcgcccccgctgcagcctaccgaacttgtacagcgccttggcaccgtggacaagc 1062
Query: 528 ttgtcggagtaggtcttgctgtccttgaacactatggaagc 568
||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 1061 ttgtcagagtacgccttgctgtccttgaacactatggaagc 1021
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 989 agatccgagcaggagtggcactc 967
>gb|BE603205.3|BE603205 HVSMEh0102H23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102H23f, mRNA sequence
Length = 726
Score = 434 bits (219), Expect = e-120
Identities = 351/395 (88%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 416 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 357
Query: 108 attaatcctcctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacg 167
|| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 356 atcagtcctcctttagtgaagttgaatgaattgaatactggtaaatacgagcacatgaca 297
Query: 168 ttgtcggtttggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttagg 227
||||| |||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||
Sbjct: 296 ttgtcagtttggttgtggaatgtccttaatatttcttcataaggataccctgggcttagg 237
Query: 228 aagagtcgcagcctgctgagaagaacctgagctcctggaagtttgtcatcccaggtaaac 287
||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct: 236 aagagccgcaacctgctgagaagaacctgagatcctggaagcttgtcatcccaggtgaac 177
Query: 288 actccgtagtttggacttccaaaccagtatgctccagcgtgcttcgccattcccggggct 347
||||| ||||||||||| |||| |||| | || || |||||||| ||||| || || ||
Sbjct: 176 actccatagtttggactaccaatccagaacgcccccgcgtgcttggccatccctggagcg 117
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 116 gtggcgatcgtgaggtacgatgtgttccccgtggcgaagtacatccacgcgccaccccac 57
Query: 408 acgaactcgtcccagtagctggtggagttgtagaa 442
|| ||||| ||||||||||||||||| ||||||||
Sbjct: 56 acaaactcatcccagtagctggtggaattgtagaa 22
>gb|BJ448471.1|BJ448471 BJ448471 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20b09 5', mRNA sequence
Length = 617
Score = 418 bits (211), Expect = e-115
Identities = 349/395 (88%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 411 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 352
Query: 108 attaatcctcctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacg 167
|| | ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 351 atcagtcctcctttagtgaagttgaatgaattgaatactggtaaatatgagcacatgaca 292
Query: 168 ttgtcggtttggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttagg 227
||||| |||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||
Sbjct: 291 ttgtcagtttggttgtggaatgtccttaatatttcttcataaggataccctgggcttagg 232
Query: 228 aagagtcgcagcctgctgagaagaacctgagctcctggaagtttgtcatcccaggtaaac 287
||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct: 231 aagagccgcaacctgctgagaagaacctgagatcctggaagcttgtcatcccaggtgaac 172
Query: 288 actccgtagtttggacttccaaaccagtatgctccagcgtgcttcgccattcccggggct 347
||||| ||||||||||| |||| |||| | || || |||||||| ||||| || || ||
Sbjct: 171 actccatagtttggactaccaatccagaacgcccccgcgtgcttggccatccctggagcg 112
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| |||||||| || |||||||||||||||||||||||||||| || ||||||
Sbjct: 111 gtggcgatcgtgaggtatgatgtgttccccgtggcgaagtacatccacgcgccaccccac 52
Query: 408 acgaactcgtcccagtagctggtggagttgtagaa 442
|| ||||| ||||||||||||||||| ||||||||
Sbjct: 51 acaaactcatcccagtagctggtggaattgtagaa 17
>gb|AW982666.3|AW982666 HVSMEg0003O04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003O04f, mRNA sequence
Length = 898
Score = 355 bits (179), Expect = 1e-096
Identities = 311/355 (87%)
Strand = Plus / Minus
Query: 214 accctggacttaggaagagtcgcagcctgctgagaagaacctgagctcctggaagtttgt 273
||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||| ||||
Sbjct: 487 accctgggcttaggaagagccgcaacctgctgagaagaacctgagatcctggaagcttgt 428
Query: 274 catcccaggtaaacactccgtagtttggacttccaaaccagtatgctccagcgtgcttcg 333
|||||||||| |||||||| ||||||||||| |||| |||| | || || |||||||| |
Sbjct: 427 catcccaggtgaacactccatagtttggactaccaatccagaacgcccccgcgtgcttgg 368
Query: 334 ccattcccggggctgtggcgacggtgaggtacgagttgttccccgtggcgaagtacatcc 393
|||| || || || ||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 367 ccatccctggagcggtggcgatcgtgaggtacgatgtgttccccgtggcgaagtacatcc 308
Query: 394 acgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaagatggcctggt 453
|||| || |||||||| ||||| ||||||||||||||||| |||||||| | | ||| |
Sbjct: 307 acgcgccaccccacacaaactcatcccagtagctggtggaattgtagaacagcgactgat 248
Query: 454 cagatccgttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttgg 513
|||| || ||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 247 cagagccattggggctgtatcgcccccgctgcagcctaccgaacttgtacagcgccttgg 188
Query: 514 cgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatggaagc 568
| || | ||| |||||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 187 caccgtggacaagcttgtcagagtacgccttgctgtccttgaacactatggaagc 133
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 101 agatccgagcaggagtggcactc 79
>gb|BG418753.1|BG418753 HVSMEk0024E15f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024E15f, mRNA sequence
Length = 879
Score = 301 bits (152), Expect = 2e-080
Identities = 405/484 (83%), Gaps = 5/484 (1%)
Strand = Plus / Minus
Query: 86 aggccttccatggttgagctgtattaatcctcctttggtgaagttgaatgaattgaatac 145
|||||||||| ||||||| || || | |||| ||| |||||||||||| ||||||||
Sbjct: 821 aggccttccaaggttgagttg-atcagtccttcttaagtgaagttgaat-aattgaattn 764
Query: 146 aggtaaatacgagc-acatgacgttgtcggtttggttgtggaatgtcctcagtatttctt 204
||||||| ||||| ||||||| | ||| ||||||| |||||||||||| | |||| ||
Sbjct: 763 tggtaaat-cgagccacatgacatggtcagtttggt-gtggaatgtccttaatattcctc 706
Query: 205 cgtaagggtaccctggacttaggaagagtcgcagcctgctgagaagaacctgagctcctg 264
| |||| |||| ||| ||||||||||| |||| ||||||||||||| | |||| || ||
Sbjct: 705 cataagaataccttgggcttaggaagagccgcaacctgctgagaagaccttgagatcntg 646
Query: 265 gaagtttgtcatcccaggtaaacactccgtagtttggacttccaaaccagtatgctccag 324
||| | ||||||||||| |||||||| ||||||||||| |||| |||| | || || |
Sbjct: 645 aaagctgntcatcccaggtgaacactccatagtttggactaccaatccagaacgcccccg 586
Query: 325 cgtgcttcgccattcccggggctgtggcgacggtgaggtacgagttgttccccgtggcga 384
||||||| ||||| | | || ||||||| ||||||||||| |||||||||||||||
Sbjct: 585 cgtgcttggccatccttgaagcggtggcgatcgtgaggtacgatgtgttccccgtggcga 526
Query: 385 agtacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaaga 444
||||||||||||| || |||||||| ||||| || |||||||||||||| |||||||| |
Sbjct: 525 agtacatccacgcgccaccccacacaaactcatcncagtagctggtggaattgtagaaca 466
Query: 445 tggcctggtcagatccgttggggctgtatcgcccacgctgcagcctgccgaacttgtaca 504
| ||| ||||| || ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 465 gcgactgatcagagccattggggctgtatcgcccccgctgcagcctaccgaacttgtaca 406
Query: 505 gggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatgg 564
| |||||||| || | ||| |||||||| ||||| | |||||||||||||||||||||||
Sbjct: 405 gcgccttggcaccgtggacaagcttgtcagagtacgccttgctgtccttgaacactatgg 346
Query: 565 aagc 568
||||
Sbjct: 345 aagc 342
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 310 agatccgagcaggagtggcactc 288
>gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. vulgare cDNA clone HF08E02
5-PRIME, mRNA sequence
Length = 583
Score = 301 bits (152), Expect = 2e-080
Identities = 227/252 (90%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 262 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 203
Query: 108 attaatcctcctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacg 167
|| | ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 202 atcagtcctcctttagtgaagttgaatgaattgaatactggtaaatatgagcacatgaca 143
Query: 168 ttgtcggtttggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttagg 227
||||| |||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||
Sbjct: 142 ttgtcagtttggttgtggaatgtccttaatatttcttcataaggataccctgggcttagg 83
Query: 228 aagagtcgcagcctgctgagaagaacctgagctcctggaagtttgtcatcccaggtaaac 287
||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct: 82 aagagccgcaacctgctgagaagaacctgagatcctggaagcttgtcatcccaggtgaac 23
Query: 288 actccgtagttt 299
||||| ||||||
Sbjct: 22 actccatagttt 11
>gb|AV914917.1|AV914917 AV914917 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9a10 5', mRNA sequence
Length = 618
Score = 285 bits (144), Expect = 9e-076
Identities = 264/304 (86%)
Strand = Plus / Minus
Query: 265 gaagtttgtcatcccaggtaaacactccgtagtttggacttccaaaccagtatgctccag 324
|||| |||||||||||||| |||||||| ||||||||||| |||| |||| | || || |
Sbjct: 618 gaagcttgtcatcccaggtgaacactccatagtttggactaccaatccagaacgcccccg 559
Query: 325 cgtgcttcgccattcccggggctgtggcgacggtgaggtacgagttgttccccgtggcga 384
||||||| ||||| || || || ||||||| ||||||||||| |||||||||||||||
Sbjct: 558 cgtgcttggccatccctggagcggtggcgatcgtgaggtacgatgtgttccccgtggcga 499
Query: 385 agtacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaaga 444
||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct: 498 agtacatccacgcgccaccccacacaaactcatcccagtagctggtggaattgtagaaca 439
Query: 445 tggcctggtcagatccgttggggctgtatcgcccacgctgcagcctgccgaacttgtaca 504
| ||| ||||| || ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 438 gcgactgatcagagccattggggctgtatcgcccccgctgcagcctaccgaacttgtaca 379
Query: 505 gggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatgg 564
| |||||||| || | ||| |||||||| ||||| | |||||||||||||||||||||||
Sbjct: 378 gcgccttggcaccgtggacaagcttgtcagagtacgccttgctgtccttgaacactatgg 319
Query: 565 aagc 568
||||
Sbjct: 318 aagc 315
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 283 agatccgagcaggagtggcactc 261
>gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d08 5', mRNA sequence
Length = 607
Score = 278 bits (140), Expect = 2e-073
Identities = 219/244 (89%), Gaps = 1/244 (0%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 253 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 194
Query: 108 attaatcctcctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacg 167
|| | ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 193 atcagtcctcctttagtgaagttgaatgaattgaatactggtaaatatgagcacatgaca 134
Query: 168 ttgtcggtttggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttagg 227
||||| |||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||
Sbjct: 133 ttgtcagtttggttgtggaatgtccttaatatttcttcataaggataccctgggcttagg 74
Query: 228 aagagtcgcagcctgctgagaagaacctgagctcctggaagtttgtcat-cccaggtaaa 286
||||| |||| |||||||||||||||||||| ||||||||| ||||||| ||||||| ||
Sbjct: 73 aagagccgcaacctgctgagaagaacctgagatcctggaagcttgtcatncccaggtgaa 14
Query: 287 cact 290
||||
Sbjct: 13 cact 10
>gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 5', mRNA sequence
Length = 507
Score = 214 bits (108), Expect = 3e-054
Identities = 165/184 (89%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 185 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 126
Query: 108 attaatcctcctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacg 167
|| | ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 125 atcagtcctcctttagtgaagttgaatgaattgaatactggtaaatatgagcacatgaca 66
Query: 168 ttgtcggtttggttgtggaatgtcctcagtatttcttcgtaagggtaccctggacttagg 227
||||| |||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||
Sbjct: 65 ttgtcagtttggttgtggaatgtccttaatatttcttcataaggataccctgggcttagg 6
Query: 228 aaga 231
||||
Sbjct: 5 aaga 2
>gb|AL508501.1|AL508501 AL508501 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08P04V 5',
mRNA sequence
Length = 692
Score = 204 bits (103), Expect = 3e-051
Identities = 195/223 (87%), Gaps = 2/223 (0%)
Strand = Plus / Minus
Query: 348 gtggcgacggtgaggtacgagttgttcccc-gtggcgaagtacatccacgca-ccgcccc 405
||||||| ||||||||||| |||||||| |||||||||||||||||||| || ||||
Sbjct: 691 gtggcgatcgtgaggtacgatgtgttcccccgtggcgaagtacatccacgcggccacccc 632
Query: 406 acacgaactcgtcccagtagctggtggagttgtagaagatggcctggtcagatccgttgg 465
|||| ||||| ||||||||||||||||| |||||||| | | ||| ||||| || ||||
Sbjct: 631 acacaaactcatcccagtagctggtggaattgtagaacagcgactgatcagagccattgg 572
Query: 466 ggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttggcgcccttgacga 525
||||||||||||| ||||||||||| |||||||||||||| |||||||| || | ||| |
Sbjct: 571 ggctgtatcgcccccgctgcagcctaccgaacttgtacagcgccttggcaccgtggacaa 512
Query: 526 gcttgtcggagtaggtcttgctgtccttgaacactatggaagc 568
||||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 511 gcttgtcagagtacgccttgctgtccttgaacactatggaagc 469
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 437 agatccgagcaggagtggcactc 415
>gb|AV909996.1|AV909996 AV909996 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2l16 5', mRNA sequence
Length = 253
Score = 200 bits (101), Expect = 4e-050
Identities = 155/173 (89%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 176 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 117
Query: 108 attaatcctcctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacg 167
|| | ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 116 atcagtcctcctttagtgaagttgaatgaattgaatactggtaaatatgagcacatgaca 57
Query: 168 ttgtcggtttggttgtggaatgtcctcagtatttcttcgtaagggtaccctgg 220
||||| |||||||||||||||||||| | ||||||||| ||||| ||||||||
Sbjct: 56 ttgtcagtttggttgtggaatgtccttaatatttcttcataaggataccctgg 4
>gb|CK123474.1|CK123474 BES1824104c11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C114 5-PRIME, mRNA sequence
Length = 780
Score = 200 bits (101), Expect = 4e-050
Identities = 184/211 (87%), Gaps = 1/211 (0%)
Strand = Plus / Minus
Query: 359 gaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtc 418
||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct: 779 gaggtacgatgngttccccgtggcgaagtacatccacgngccaccccacacaaactcatc 720
Query: 419 ccagtagctggtggagttgtagaagatggcctggtcagatccgttggggctgtatcg-cc 477
||||||||||||||| |||||||| | | ||| ||||| || |||||||||||||| ||
Sbjct: 719 ccagtagctggtggaattgtagaacagcgactgatcagagccattggggctgtatcgccc 660
Query: 478 cacgctgcagcctgccgaacttgtacagggccttggcgcccttgacgagcttgtcggagt 537
| ||||||||||| |||||||||||||| |||||||| || | ||| |||||||| ||||
Sbjct: 659 cccgctgcagcctaccgaacttgtacagcgccttggcaccgtggacaagcttgtcagagt 600
Query: 538 aggtcttgctgtccttgaacactatggaagc 568
| | |||||||||||||||||||||||||||
Sbjct: 599 acgccttgctgtccttgaacactatggaagc 569
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 537 agatccgagcaggagtggcactc 515
>gb|BG365744.1|BG365744 HVSMEi0004A10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004A10f, mRNA sequence
Length = 484
Score = 186 bits (94), Expect = 6e-046
Identities = 191/222 (86%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
||||||| ||||||||| | ||||| | ||| ||||||||||||||| |||||||||
Sbjct: 380 gtggcgatcgtgaggtactatgtgttctctgtgtcgaagtacatccacgtgccgccccac 321
Query: 408 acgaactcgtcccagtagctggtggagttgtagaagatg-gcctggtcagatccgttggg 466
|| ||||| ||||||||||||||||| |||||||| | | ||| ||||| || |||||
Sbjct: 320 acaaactcatcccagtagctggtggaattgtagaacagctgactgatcagagccattggg 261
Query: 467 gctgtatcgcccacgctgcagcctgccgaacttgtacagggccttggcgcccttgacgag 526
|||||||||||| ||||||||||| |||||||||||||| |||||||| || | ||| ||
Sbjct: 260 gctgtatcgcccccgctgcagcctaccgaacttgtacagcgccttggcaccgtggacaag 201
Query: 527 cttgtcggagtaggtcttgctgtccttgaacactatggaagc 568
|||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 200 cttgtcagagtacgccttgctgtccttgaacactatggaagc 159
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 127 agatccgagcaggagtggcactc 105
>gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004M14f, mRNA sequence
Length = 562
Score = 168 bits (85), Expect = 2e-040
Identities = 124/137 (90%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 137 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 78
Query: 108 attaatcctcctttggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacg 167
|| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 77 atcagtcctcctttagtgaagttgaatgaattgaatactggtaaatacgagcacatgaca 18
Query: 168 ttgtcggtttggttgtg 184
||||| |||||||||||
Sbjct: 17 ttgtcagtttggttgtg 1
>gb|AV914894.1|AV914894 AV914894 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8o19 5', mRNA sequence
Length = 562
Score = 135 bits (68), Expect = 2e-030
Identities = 104/116 (89%)
Strand = Plus / Minus
Query: 453 tcagatccgttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttg 512
||||| || ||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 556 tcagagccattggggctgtatcgcccccgctgcagcctaccgaacttgtacagcgccttg 497
Query: 513 gcgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatggaagc 568
|| || | ||| |||||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 496 gcaccgtggacaagcttgtcagagtacgccttgctgtccttgaacactatggaagc 441
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 409 agatccgagcaggagtggcactc 387
>gb|BE455799.3|BE455799 HVSMEg0015D01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015D01f, mRNA sequence
Length = 578
Score = 117 bits (59), Expect = 5e-025
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 463 tggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttggcgcccttga 522
|||| ||||||||||| |||||||||| |||||||||||||| |||||||| || | ||
Sbjct: 555 tgggnctgtatcgccccggctgcagcctaccgaacttgtacagcgccttggcaccgtgga 496
Query: 523 cgagcttgtcggagtaggtcttgctgtccttgaacactatggaagc 568
| |||||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 495 caagcttgtcagagtacgccttgctgtccttgaacactatggaagc 450
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 418 agatccgagcaggagtggcactc 396
>gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098M02f, mRNA sequence
Length = 641
Score = 103 bits (52), Expect = 8e-021
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 92 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 33
Query: 108 attaatcctcctttggtgaagttgaatgaatt 139
|| | ||||||||| |||||||||||||||||
Sbjct: 32 atcagtcctcctttagtgaagttgaatgaatt 1
>gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, reduced light, cv Optic, EBro05
Hordeum vulgare subsp. vulgare cDNA clone
EBro05_SQ003_F03 5', mRNA sequence
Length = 499
Score = 91.7 bits (46), Expect = 3e-017
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 86 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 27
Query: 108 attaatcctcctttggtgaagttgaa 133
|| | ||||||||| |||||||||||
Sbjct: 26 atcagtcctcctttagtgaagttgaa 1
>gb|BI956352.1|BI956352 HVSMEn0002L24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002L24f, mRNA sequence
Length = 831
Score = 75.8 bits (38), Expect = 2e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 95 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 36
Query: 108 attaatcctccttt 121
|| | |||||||||
Sbjct: 35 atcagtcctccttt 22
>gb|BF260719.2|BF260719 HVSMEf0022M05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022M05f, mRNA sequence
Length = 541
Score = 73.8 bits (37), Expect = 7e-012
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 368 gttgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagct 427
|||||| || |||||| |||||||||| | ||| ||||| ||||||||||||||||||
Sbjct: 190 gttgttgccggtggcgtagtacatccaggaggcgctccacatgaactcgtcccagtagct 131
Query: 428 ggtggagttgtag 440
|||||||||||||
Sbjct: 130 ggtggagttgtag 118
>gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_D16 5', mRNA sequence
Length = 685
Score = 73.8 bits (37), Expect = 7e-012
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 368 gttgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagct 427
|||||| || |||||| |||||||||| | ||| ||||| ||||||||||||||||||
Sbjct: 190 gttgttgccggtggcgtagtacatccaggaggcgctccacatgaactcgtcccagtagct 131
Query: 428 ggtggagttgtag 440
|||||||||||||
Sbjct: 130 ggtggagttgtag 118
>gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0023G06f, mRNA sequence
Length = 815
Score = 65.9 bits (33), Expect = 2e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 48 gcaaggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggttgagctgt 107
|||||||| ||||| ||||| |||||||||| |||||||||| |||||||||||| |||
Sbjct: 61 gcaaggaatgctgcattgacgacgtactgaagtggttgaggccctccatggttgagttgt 2
Query: 108 a 108
|
Sbjct: 1 a 1
>gb|AV925024.1|AV925024 AV925024 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17p11 5', mRNA sequence
Length = 639
Score = 63.9 bits (32), Expect = 6e-009
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 525 agcttgtcggagtaggtcttgctgtccttgaacactatggaagc 568
|||||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 633 agcttgtcagagtacgccttgctgtccttgaacactatggaagc 590
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 558 agatccgagcaggagtggcactc 536
>gb|BU967340.1|BU967340 HB03P20r BC Hordeum vulgare subsp. vulgare cDNA clone HB03P20
5-PRIME, mRNA sequence
Length = 523
Score = 52.0 bits (26), Expect = 2e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 368 gttgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagct 427
|||||| || |||||| |||||||||| | ||| || || ||||||||||||||||||
Sbjct: 85 gttgttgccggtggcgtagtacatccaggaggcgctccccatgaactcgtcccagtagct 26
Query: 428 ggtgga 433
||||||
Sbjct: 25 ggtgga 20
>gb|BU979160.1|BU979160 HA15F07r HA Hordeum vulgare subsp. vulgare cDNA clone HA15F07
5-PRIME, mRNA sequence
Length = 443
Score = 42.1 bits (21), Expect = 0.024
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 1 accacccaggcgtgtcagccgcttcaagatagtcgctgtataaagaagcaaggaaagctg 60
|||||||||| || || || || ||||||||||| ||| | | |||||||||||| || |
Sbjct: 286 accacccaggggtatctgcagcctcaagatagtcactgaacagagaagcaaggaatgcag 227
Query: 61 cgttgacagcgtactgaagcggttg 85
| ||||| | ||||| ||||||||
Sbjct: 226 cattgactacatactggagcggttg 202
>gb|AV925017.1|AV925017 AV925017 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17o24 5', mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 559 agatccgagcaggagtggcactc 537
>gb|AV925025.1|AV925025 AV925025 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17p12 5', mRNA sequence
Length = 566
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 555 agatccgagcaggagtggcactc 533
>gb|BU983204.1|BU983204 HA28O05r HA Hordeum vulgare subsp. vulgare cDNA clone HA28O05
5-PRIME, mRNA sequence
Length = 456
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 600 agatctgagcaggagtggcactc 622
||||| |||||||||||||||||
Sbjct: 456 agatccgagcaggagtggcactc 434
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,358
Number of Sequences: 312970
Number of extensions: 56358
Number of successful extensions: 16477
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16422
Number of HSP's gapped (non-prelim): 50
length of query: 689
length of database: 175,134,539
effective HSP length: 19
effective length of query: 670
effective length of database: 169,188,109
effective search space: 113356033030
effective search space used: 113356033030
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)