BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF25f04.yg.3.3
(1599 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ469318.1|BJ469318 BJ469318 K. Sato unpublished cDNA li... 404 e-111
gb|BJ470140.1|BJ470140 BJ470140 K. Sato unpublished cDNA li... 392 e-107
gb|AV934080.1|AV934080 AV934080 K. Sato unpublished cDNA li... 359 2e-097
gb|AV915093.1|AV915093 AV915093 K. Sato unpublished cDNA li... 355 3e-096
gb|BJ473588.1|BJ473588 BJ473588 K. Sato unpublished cDNA li... 276 2e-072
gb|BI779104.2|BI779104 EBro01_SQ003_A04_R root, 3 week, hyd... 266 2e-069
gb|AV920227.1|AV920227 AV920227 K. Sato unpublished cDNA li... 262 3e-068
gb|AV936330.1|AV936330 AV936330 K. Sato unpublished cDNA li... 210 1e-052
gb|BJ474628.1|BJ474628 BJ474628 K. Sato unpublished cDNA li... 210 1e-052
gb|AV833703.1|AV833703 AV833703 K. Sato unpublished cDNA li... 186 2e-045
gb|BU995664.1|BU995664 HM10P13r HM Hordeum vulgare subsp. v... 182 2e-044
gb|BJ475245.1|BJ475245 BJ475245 K. Sato unpublished cDNA li... 157 1e-036
gb|AL500314.1|AL500314 AL500314 Hordeum vulgare Barke etiol... 135 5e-030
gb|CB881799.1|CB881799 HM10O14w HM Hordeum vulgare subsp. v... 84 2e-014
gb|AV921668.1|AV921668 AV921668 K. Sato unpublished cDNA li... 40 0.22
>gb|BJ469318.1|BJ469318 BJ469318 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal20e17 5', mRNA sequence
Length = 663
Score = 404 bits (204), Expect = e-111
Identities = 538/652 (82%), Gaps = 6/652 (0%)
Strand = Plus / Plus
Query: 506 atcctgagcaccgcctcaaannnnnnnctttgcttcgtgcaattggcacccattgcttcc 565
||||||||||||||||||| |||| |||||||| || ||||| |||||||||
Sbjct: 18 atcctgagcaccgcctcaagtttttctctttacttcgtgctatcggcactcattgcttca 77
Query: 566 aagcattaatccagctttcaagtcagcaattgaagcttgtgatcgattcaattaattggg 625
|||| ||||| |||||||| || |||||||||||||||||||| ||||| ||||| ||||
Sbjct: 78 aagctttaattcagctttccagccagcaattgaagcttgtgattgattcgattaactggg 137
Query: 626 cgttcagacatacagagagaaatattgcagagactggccttagcctgttgttggagatct 685
| || ||||||||||||||||| ||||| ||||| |||||||| || |||||||| ||
Sbjct: 138 catttagacatacagagagaaacattgccgagaccggccttagtctattgttggaaattc 197
Query: 686 tgaaaaaattccaggcttcaggattccaaaaccaattctacaaaacctactttttgacaa 745
|||| || || |||||||||| |||| || || |||||||| || || ||||||| |
Sbjct: 198 tgaagaattttcaggcttcagaattcacgaatcagttctacaagacatattttttgaata 257
Query: 746 ttgagcaagagatttttgcagtcctcacagacacattccataaacctggtttcaagcttc 805
| ||||| |||||||||||||| |||||||| |||| ||||||||||| ||||| ||||
Sbjct: 258 tagagcaggagatttttgcagttctcacagattcatttcataaacctggattcaaacttc 317
Query: 806 atgtttcggtgctacaacacttgttttgtgcggttgatggtctaacggagcctctatggg 865
|||||| |||||| |||||||||||||| | |||||| | ||||| || ||||||||||
Sbjct: 318 atgttttggtgcttcaacacttgttttgcgtggttgacagcctaactgaacctctatggg 377
Query: 866 acgcgtcttctgtaccatatcaatatacggataatgccatgtttgttcgagattacacca 925
| || || | ||| |||||| || ||||||| ||||||| || || ||||| |
Sbjct: 378 atgcatccacggtatcatatccat------ctaatgccttgtttgtacgggactacacaa 431
Query: 926 taaaactcttaggaacatcatttcctaacatgactgtagctgaggtgaccaagtttgtgg 985
| ||||| | || ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 432 tcaaacttcttggggcatcatttcctaacatgacggtagctgaggtgaccaagtttgttg 491
Query: 986 atggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatattagagatttcc 1045
|||| || ||| |||| | || ||| || || |||||||||||||||||||| || ||||
Sbjct: 492 atgggctccttggttcgagacatgacctcccaagcttcaaaaaccatattagggacttcc 551
Query: 1046 tggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctg 1105
||||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct: 552 tggtgcaatcaaaggagttctcagcccaggataacaaggatctgtatgcggaagaggctg 611
Query: 1106 ctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgat 1157
| | |||||||||| ||| | ||||| ||||||||||| || ||||||||
Sbjct: 612 cggtacaaagagaaaaggaaaggcaacggatgcttgccatcccagggctgat 663
>gb|BJ470140.1|BJ470140 BJ470140 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15i11 5', mRNA sequence
Length = 643
Score = 392 bits (198), Expect = e-107
Identities = 526/638 (82%), Gaps = 6/638 (0%)
Strand = Plus / Plus
Query: 506 atcctgagcaccgcctcaaannnnnnnctttgcttcgtgcaattggcacccattgcttcc 565
||||||||||||||||||| |||| |||||||| || ||||| |||||||||
Sbjct: 12 atcctgagcaccgcctcaagtttttctctttacttcgtgctatcggcactcattgcttca 71
Query: 566 aagcattaatccagctttcaagtcagcaattgaagcttgtgatcgattcaattaattggg 625
|||| ||||| |||||||| || |||||||||||||||||||| ||||| ||||| ||||
Sbjct: 72 aagctttaattcagctttccagccagcaattgaagcttgtgattgattcgattaactggg 131
Query: 626 cgttcagacatacagagagaaatattgcagagactggccttagcctgttgttggagatct 685
| || ||||||||||||||||| ||||| ||||| |||||||| || |||||||| ||
Sbjct: 132 catttagacatacagagagaaacattgccgagaccggccttagtctattgttggaaattc 191
Query: 686 tgaaaaaattccaggcttcaggattccaaaaccaattctacaaaacctactttttgacaa 745
|||| || || |||||||||| |||| || || |||||||| || || ||||||| |
Sbjct: 192 tgaagaattttcaggcttcagaattcacgaatcagttctacaagacatattttttgaata 251
Query: 746 ttgagcaagagatttttgcagtcctcacagacacattccataaacctggtttcaagcttc 805
| ||||| |||||||||||||| |||||||| |||| ||||||||||| ||||| ||||
Sbjct: 252 tagagcaggagatttttgcagttctcacagattcatttcataaacctggattcaaacttc 311
Query: 806 atgtttcggtgctacaacacttgttttgtgcggttgatggtctaacggagcctctatggg 865
|||||| |||||| |||||||||||||| | |||||| | ||||| || ||||||||||
Sbjct: 312 atgttttggtgcttcaacacttgttttgcgtggttgacagcctaactgaacctctatggg 371
Query: 866 acgcgtcttctgtaccatatcaatatacggataatgccatgtttgttcgagattacacca 925
| || || | ||| |||||| || ||||||| ||||||| || || ||||| |
Sbjct: 372 atgcatccacggtatcatatccat------ctaatgccttgtttgtacgggactacacaa 425
Query: 926 taaaactcttaggaacatcatttcctaacatgactgtagctgaggtgaccaagtttgtgg 985
| ||||| | || ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 426 tcaaacttcttggggcatcatttcctaacatgacggtagctgaggtgaccaagtttgttg 485
Query: 986 atggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatattagagatttcc 1045
|||| || ||| |||| | || ||| || || |||||||||||||||||||| || ||||
Sbjct: 486 atgggctccttggttcgagacatgacctcccaagcttcaaaaaccatattagggacttcc 545
Query: 1046 tggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctg 1105
||||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct: 546 tggtgcaatcaaaggagttctcagcccaggataacaaggatctgtatgcggaagaggctg 605
Query: 1106 ctgcccaaagagaaagggagcgccaacgaatgcttgcc 1143
| | |||||||||| ||| | ||||| |||||||||
Sbjct: 606 cggtacaaagagaaaaggaaaggcaacggatgcttgcc 643
>gb|AV934080.1|AV934080 AV934080 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baalp02 5', mRNA sequence
Length = 597
Score = 359 bits (181), Expect = 2e-097
Identities = 475/572 (83%), Gaps = 7/572 (1%)
Strand = Plus / Plus
Query: 533 ctttgcttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcagc 592
|||| |||||||| || ||||| ||||||||| |||| ||||| |||||||| || ||||
Sbjct: 18 ctttacttcgtgctatcggcactcattgcttcaaagctttaattcagctttccagccagc 77
Query: 593 aattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaatattg 652
|||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||
Sbjct: 78 aattgaagcttgtgattgattcgattaactgggcatttagacatacagagagaaacattg 137
Query: 653 cagagactggccttagcctgttgttggagatcttgaaaaaattccaggcttcaggattcc 712
| ||||| |||||||| || |||||||| || |||| || || |||||||||| ||||
Sbjct: 138 ccgagaccggccttagtctattgttggaaattctgaagaattttcaggcttcagaattca 197
Query: 713 aaaaccaattctacaaaacctactttttgacaattgagcaagagatttttgcagtcctca 772
|| || |||||||| || || ||||||| || ||||| |||||||||||||| ||||
Sbjct: 198 cgaatcagttctacaagacatattttttgaatatagagcaggagatttttgcagttctca 257
Query: 773 cagacacattccataaacctggtttcaagcttcatgtttcggtgctacaacacttgtttt 832
|||| |||| ||||||||||| ||||| |||||||||| |||||| |||||||||||||
Sbjct: 258 cagattcatttcataaacctggattcaaacttcatgttttggtgcttcaacacttgtttt 317
Query: 833 gtgcggttgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatata 892
| | |||||| | ||||| || ||||||||||| || || | ||| |||||| ||
Sbjct: 318 gcgtggttgacagcctaactgaacctctatgggatgcatccacggtatcatatccat--- 374
Query: 893 cggataatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttccta 952
||||||| ||||||| || || ||||| || ||||| | || ||||||||||||
Sbjct: 375 ---ctaatgccttgtttgtacgggactacacaatcaaacttcttggggcatcatttccta 431
Query: 953 acatgactgtagctgaggtgaccaagtttgtggatggccttcttagttcaaaacttgatc 1012
||||||| ||||||||||||||||||||||| ||||| || ||| |||| | || ||| |
Sbjct: 432 acatgacggtagctgaggtgaccaagtttgttgatgggctccttggttcgagacatgacc 491
Query: 1013 ttccgagcttcaaaaaccatattagaga-tttcctggtgcagtcgaaggagttctcagct 1071
| || |||||||||||||||||||| || || ||||||||| || ||||||||||||||
Sbjct: 492 tcccaagcttcaaaaaccatattagggacttccctggtgcaatcaaaggagttctcagcc 551
Query: 1072 caggataacaaggatctatacgcggaagaggc 1103
||||||||||||||||| || |||||||||||
Sbjct: 552 caggataacaaggatctgtatgcggaagaggc 583
>gb|AV915093.1|AV915093 AV915093 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9n09 5', mRNA sequence
Length = 532
Score = 355 bits (179), Expect = 3e-096
Identities = 366/431 (84%)
Strand = Plus / Plus
Query: 436 gatgtgcctcgtatatttgaggctgttttccagtgcacccttgagatgattactaagaac 495
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||
Sbjct: 2 gatgtgcctcgtatattcgaggctgttttccagtgtacccttganatgattactaaaaac 61
Query: 496 tttgaagattatcctgagcaccgcctcaaannnnnnnctttgcttcgtgcaattggcacc 555
||||||||||||||||||||||||||||| |||| |||||||| || |||||
Sbjct: 62 tttgaagattatcctgagcaccgcctcaagtttttctctttacttcgtgctatcggcact 121
Query: 556 cattgcttccaagcattaatccagctttcaagtcagcaattgaagcttgtgatcgattca 615
||||||||| |||| ||||| |||||||| || |||||||||||||||||||| |||||
Sbjct: 122 cattgcttcaaagctttaattcagctttccagccagcaattgaagcttgtgattgattcg 181
Query: 616 attaattgggcgttcagacatacagagagaaatattgcagagactggccttagcctgttg 675
||||| ||||| || ||||||||||||||||| ||||| ||||| |||||||| || |||
Sbjct: 182 attaactgggcatttagacatacagagagaaacattgccgagaccggccttagtctattg 241
Query: 676 ttggagatcttgaaaaaattccaggcttcaggattccaaaaccaattctacaaaacctac 735
||||| || |||| || || |||||||||| |||| || || |||||||| || ||
Sbjct: 242 ttggaaattctgaagaattttcaggcttcagaattcacgaatcagttctacaagacatat 301
Query: 736 tttttgacaattgagcaagagatttttgcagtcctcacagacacattccataaacctggt 795
||||||| || ||||| |||||||||||||| |||||||| |||| |||||||||||
Sbjct: 302 tttttgaatatagagcaggagatttttgcagttctcacagattcatttcataaacctgga 361
Query: 796 ttcaagcttcatgtttcggtgctacaacacttgttttgtgcggttgatggtctaacggag 855
||||| |||||||||| |||||| |||||||||||||| | |||||| | ||||| ||
Sbjct: 362 ttcaaacttcatgttttggtgcttcaacacttgttttgcgtggttgacagcctaactgaa 421
Query: 856 cctctatggga 866
|||||||||||
Sbjct: 422 cctctatggga 432
>gb|BJ473588.1|BJ473588 BJ473588 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15i11 3', mRNA sequence
Length = 736
Score = 276 bits (139), Expect = 2e-072
Identities = 229/259 (88%)
Strand = Plus / Minus
Query: 941 catcatttcctaacatgactgtagctgaggtgaccaagtttgtggatggccttcttagtt 1000
||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||| |||
Sbjct: 701 catcatttcctaacatgacggtagctgaggtgaccaagtttgttgatgggctccttggtt 642
Query: 1001 caaaacttgatcttccgagcttcaaaaaccatattagagatttcctggtgcagtcgaagg 1060
| | || ||| || || |||||||||||||||||||| || ||||||||||| || ||||
Sbjct: 641 cgagacatgacctcccaagcttcaaaaaccatattagggacttcctggtgcaatcaaagg 582
Query: 1061 agttctcagctcaggataacaaggatctatacgcggaagaggctgctgcccaaagagaaa 1120
|||||||||| ||||||||||||||||| || |||||||||||||| | ||||||||||
Sbjct: 581 agttctcagcccaggataacaaggatctgtatgcggaagaggctgcggtacaaagagaaa 522
Query: 1121 gggagcgccaacgaatgcttgccattccggggctgattgcccctagcgaattgcaagacg 1180
||| | ||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 521 aggaaaggcaacggatgcttgccatcccagggctgattgcccctagcgaattgcaagacg 462
Query: 1181 agatggtagattcgtagtg 1199
|||||||||| || |||||
Sbjct: 461 agatggtagactcatagtg 443
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1280 gagttttcttccagggtggt 1299
||||||||||||||||||||
Sbjct: 369 gagttttcttccagggtggt 350
>gb|BI779104.2|BI779104 EBro01_SQ003_A04_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_A04 5', mRNA sequence
Length = 638
Score = 266 bits (134), Expect = 2e-069
Identities = 227/258 (87%)
Strand = Plus / Plus
Query: 942 atcatttcctaacatgactgtagctgaggtgaccaagtttgtggatggccttcttagttc 1001
|||||||||||||||||| ||||||||||||||||||||||| ||||| || ||| ||||
Sbjct: 1 atcatttcctaacatgacggtagctgaggtgaccaagtttgttgatgggctccttggttc 60
Query: 1002 aaaacttgatcttccgagcttcaaaaaccatattagagatttcctggtgcagtcgaagga 1061
| || ||| || || |||||||||||||||||||| || ||||||||||| || |||||
Sbjct: 61 gagacatgacctcccaagcttcaaaaaccatattagggacttcctggtgcaatcaaagga 120
Query: 1062 gttctcagctcaggataacaaggatctatacgcggaagaggctgctgcccaaagagaaag 1121
||||||||| ||||||||||||||||| || | |||||||||||| | ||||||||||
Sbjct: 121 gttctcagcccaggataacaaggatctgtatggggaagaggctgcggtacaaagagaaaa 180
Query: 1122 ggagcgccaacgaatgcttgccattccggggctgattgcccctagcgaattgcaagacga 1181
||| | ||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 181 ggaaaggcaacggatgcttgccatcccagggctgattgcccctagcgaattgcaagacga 240
Query: 1182 gatggtagattcgtagtg 1199
||||||||| || |||||
Sbjct: 241 gatggtagactcatagtg 258
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1280 gagttttcttccagggtggt 1299
||||||||||||||||||||
Sbjct: 332 gagttttcttccagggtggt 351
>gb|AV920227.1|AV920227 AV920227 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9n09 3', mRNA sequence
Length = 665
Score = 262 bits (132), Expect = 3e-068
Identities = 229/260 (88%), Gaps = 1/260 (0%)
Strand = Plus / Minus
Query: 941 catcatttcctaacatgactg-tagctgaggtgaccaagtttgtggatggccttcttagt 999
||||||||||||||||||| | |||||||||||||||||||||| ||||| || ||| ||
Sbjct: 661 catcatttcctaacatgaccggtagctgaggtgaccaagtttgttgatgggctccttggt 602
Query: 1000 tcaaaacttgatcttccgagcttcaaaaaccatattagagatttcctggtgcagtcgaag 1059
|| | || ||| || || |||||||||||||||||||| || ||||||||||| || |||
Sbjct: 601 tcgagacatgacctcccaagcttcaaaaaccatattagggacttcctggtgcaatcaaag 542
Query: 1060 gagttctcagctcaggataacaaggatctatacgcggaagaggctgctgcccaaagagaa 1119
||||||||||| ||||||||||||||||| || |||||||||||||| | |||||||||
Sbjct: 541 gagttctcagcccaggataacaaggatctgtatgcggaagaggctgcggtacaaagagaa 482
Query: 1120 agggagcgccaacgaatgcttgccattccggggctgattgcccctagcgaattgcaagac 1179
| ||| | ||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 481 aaggaaaggcaacggatgcttgccatcccagggctgattgcccctagcgaattgcaagac 422
Query: 1180 gagatggtagattcgtagtg 1199
||||||||||| || |||||
Sbjct: 421 gagatggtagactcatagtg 402
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1280 gagttttcttccagggtggt 1299
||||||||||||||||||||
Sbjct: 328 gagttttcttccagggtggt 309
>gb|AV936330.1|AV936330 AV936330 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10p02 3', mRNA sequence
Length = 613
Score = 210 bits (106), Expect = 1e-052
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 1018 agcttcaaaaaccatattagagatttcctggtgcagtcgaaggagttctcagctcaggat 1077
|||||||||||||||||||| || ||||||||||| || |||||||||||||| ||||||
Sbjct: 593 agcttcaaaaaccatattagggacttcctggtgcaatcaaaggagttctcagcccaggat 534
Query: 1078 aacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaacgaatg 1137
||||||||||| || |||||||||||||| | |||||||||| ||| | ||||| |||
Sbjct: 533 aacaaggatctgtatgcggaagaggctgcggtacaaagagaaaaggaaaggcaacggatg 474
Query: 1138 cttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagattcgtag 1197
|||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 473 cttgccatcccagggctgattgcccctagcgaattgcaagacgagatggtagactcatag 414
Query: 1198 tg 1199
||
Sbjct: 413 tg 412
>gb|BJ474628.1|BJ474628 BJ474628 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal20e17 3', mRNA sequence
Length = 643
Score = 210 bits (106), Expect = 1e-052
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 1018 agcttcaaaaaccatattagagatttcctggtgcagtcgaaggagttctcagctcaggat 1077
|||||||||||||||||||| || ||||||||||| || |||||||||||||| ||||||
Sbjct: 623 agcttcaaaaaccatattagggacttcctggtgcaatcaaaggagttctcagcccaggat 564
Query: 1078 aacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaacgaatg 1137
||||||||||| || |||||||||||||| | |||||||||| ||| | ||||| |||
Sbjct: 563 aacaaggatctgtatgcggaagaggctgcggtacaaagagaaaaggaaaggcaacggatg 504
Query: 1138 cttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagattcgtag 1197
|||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 503 cttgccatcccagggctgattgcccctagcgaattgcaagacgagatggtagactcatag 444
Query: 1198 tg 1199
||
Sbjct: 443 tg 442
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1280 gagttttcttccagggtggt 1299
||||||||||||||||||||
Sbjct: 368 gagttttcttccagggtggt 349
>gb|AV833703.1|AV833703 AV833703 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags12e10, mRNA sequence
Length = 211
Score = 186 bits (94), Expect = 2e-045
Identities = 171/197 (86%)
Strand = Plus / Plus
Query: 256 ttgatcgagacttttgtggacaaggcggaagatttgccacatgtaggaaagcagtttgta 315
||||| ||||||||||||||||| || ||||| | ||||| | || |||||||||||
Sbjct: 11 ttgattgagacttttgtggacaaagctgaagacctaccacaccttgggaagcagtttgtt 70
Query: 316 ccaccaatgatggatcctgttcttggtgattatgctagaaatgtacccgatgcaagggag 375
|| ||||||||||||||| |||||||||||||||| |||||||| || |||||||||||
Sbjct: 71 cctccaatgatggatcctattcttggtgattatgcaagaaatgtgcctgatgcaagggaa 130
Query: 376 tctgaagttctgtccttgtttgcaacaatcattaacaagtacaaaggggaaatgcttgag 435
|||||||| |||||| ||||||||||| | || ||||||| ||||| |||||||||||
Sbjct: 131 tctgaagtcctgtccctgtttgcaacagttataaacaagtncaaagctgaaatgcttgat 190
Query: 436 gatgtgcctcgtatatt 452
|||||||||||||||||
Sbjct: 191 gatgtgcctcgtatatt 207
>gb|BU995664.1|BU995664 HM10P13r HM Hordeum vulgare subsp. vulgare cDNA clone HM10P13
5-PRIME, mRNA sequence
Length = 594
Score = 182 bits (92), Expect = 2e-044
Identities = 156/176 (88%), Gaps = 1/176 (0%)
Strand = Plus / Plus
Query: 1024 aaaaaccatattagagatttcctggtgcagtcgaaggagttctcagctcaggataacaag 1083
||||||||||| || || ||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 14 aaaaaccatat-agggacttcctggtgcaatcaaaggagttctcagcccaggataacaag 72
Query: 1084 gatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaacgaatgcttgcc 1143
||||| || |||||||||||||| | |||||||||| ||| | ||||| |||||||||
Sbjct: 73 gatctgtatgcggaagaggctgcggtacaaagagaaaaggaaaggcaacggatgcttgcc 132
Query: 1144 attccggggctgattgcccctagcgaattgcaagacgagatggtagattcgtagtg 1199
|| || ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 133 atcccagggctgattgcccctagcgaattgcaagacgagatggtagactcatagtg 188
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1280 gagttttcttccagggtggt 1299
||||||||||||||||||||
Sbjct: 262 gagttttcttccagggtggt 281
>gb|BJ475245.1|BJ475245 BJ475245 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal24h23 3', mRNA sequence
Length = 583
Score = 157 bits (79), Expect = 1e-036
Identities = 139/158 (87%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 1042 ttcctggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagag 1101
||||||||||| || |||||||| ||||| ||||||||||||||||| || |||||||||
Sbjct: 583 ttcctggtgcaatcaaaggagttntcagcccaggataacaaggatctgtatgcggaagag 524
Query: 1102 gctgctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcc 1161
||| | | |||||||||| ||| | ||||| ||||||||||| || ||||||||||||
Sbjct: 523 gct-cggtacaaagagaaaaggaaaggcaacggatgcttgccatcccagggctgattgcc 465
Query: 1162 cctagcgaattgcaagacgagatggtagattcgtagtg 1199
||||||||||||||||||||||||||||| || |||||
Sbjct: 464 cctagcgaattgcaagacgagatggtagactcatagtg 427
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1280 gagttttcttccagggtggt 1299
||||||||||||||||||||
Sbjct: 353 gagttttcttccagggtggt 334
>gb|AL500314.1|AL500314 AL500314 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06A14r 3', mRNA sequence
Length = 700
Score = 135 bits (68), Expect = 5e-030
Identities = 139/161 (86%), Gaps = 2/161 (1%)
Strand = Plus / Minus
Query: 1041 tttcctggtgcagtcgaa-ggagttctcagctcaggataacaaggatctatacgcggaag 1099
|||||||||||| || || |||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 636 tttcctggtgcaatcaaaaggagttntcagcccaggataacaaggatctgtatgcggaan 577
Query: 1100 aggct-gctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgatt 1158
||||| || | |||||||||| ||| | ||||| ||||||||||| || |||||||||
Sbjct: 576 aggcttgcggtacaaagagaaaaggaaaggcaacggatgcttgccatcccagggctgatt 517
Query: 1159 gcccctagcgaattgcaagacgagatggtagattcgtagtg 1199
|||||||||||||||||| ||||||||||||| || |||||
Sbjct: 516 gcccctagcgaattgcaanacgagatggtagactcatagtg 476
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1280 gagttttcttccagggtggt 1299
||||||||||||||||||||
Sbjct: 402 gagttttcttccagggtggt 383
>gb|CB881799.1|CB881799 HM10O14w HM Hordeum vulgare subsp. vulgare cDNA clone HM10O14
3-PRIME, mRNA sequence
Length = 517
Score = 83.8 bits (42), Expect = 2e-014
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 1150 gggctgattgcccctagcgaattgcaagacgagatggtagattcgtagtg 1199
||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 511 gggctgattgcccctagcgaattgcaagacgagatggtagactcatagtg 462
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1280 gagttttcttccagggtggt 1299
||||||||||||||||||||
Sbjct: 388 gagttttcttccagggtggt 369
>gb|AV921668.1|AV921668 AV921668 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e10 3', mRNA sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1280 gagttttcttccagggtggt 1299
||||||||||||||||||||
Sbjct: 326 gagttttcttccagggtggt 307
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,237
Number of Sequences: 312970
Number of extensions: 131237
Number of successful extensions: 33493
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33436
Number of HSP's gapped (non-prelim): 51
length of query: 1599
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1580
effective length of database: 169,188,109
effective search space: 267317212220
effective search space used: 267317212220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)