BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF13b04.yg.2.1
(370 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 246 4e-064
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 246 4e-064
gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedl... 182 5e-045
gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. v... 127 3e-028
gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. v... 96 1e-018
gb|BQ134680.1|BQ134680 LP30153 Lemma/palea-enriched cDNA li... 52 1e-005
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 46 8e-004
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 46 8e-004
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 46 8e-004
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 46 8e-004
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 46 8e-004
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 46 8e-004
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 46 8e-004
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 46 8e-004
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 46 8e-004
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 46 8e-004
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 46 8e-004
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 46 8e-004
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 46 8e-004
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 46 8e-004
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 46 8e-004
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 46 8e-004
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 46 8e-004
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 46 8e-004
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 44 0.003
gb|BM371400.1|BM371400 EBma08_SQ002_J07_R maternal, 28 DPA,... 42 0.012
gb|BM371413.1|BM371413 EBma08_SQ002_K05_R maternal, 28 DPA,... 42 0.012
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 42 0.012
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 42 0.012
gb|BQ134691.1|BQ134691 LP30188 Lemma/palea-enriched cDNA li... 42 0.012
gb|BQ134696.1|BQ134696 LP20015 Lemma/palea-enriched cDNA li... 42 0.012
gb|BQ294513.1|BQ294513 LP10226 Lemma/palea-enriched cDNA li... 42 0.012
gb|BQ294528.1|BQ294528 LP10288 Lemma/palea-enriched cDNA li... 42 0.012
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 42 0.012
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.049
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.049
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 40 0.049
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.049
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.049
gb|BQ135350.1|BQ135350 LP10104 Lemma/palea-enriched cDNA li... 40 0.049
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.049
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.049
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.049
gb|BM928830.1|BM928830 LP10002 Lemma/palea-enriched cDNA li... 38 0.19
gb|AJ582221.1|AJ582221 AJ582221 Hordeum vulgare subsp. vulg... 38 0.19
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 246 bits (124), Expect = 4e-064
Identities = 285/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctggccttatctggtgttggagaatcaattca 76
|||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct: 253 gtacatatttctctatggtaaaacctatctggctttatctggtgttggagaatcaattca 312
Query: 77 aaatagagcggatatactgcagaacgcagccttgaatgctgctctgaacactcaatttct 136
|||||| |||||||||| | || | ||| |||| ||||||||||| || |||||
Sbjct: 313 aaatagggcggatatacagggaaatgaagcattgagcatagctctgaacacccagtttct 372
Query: 137 tttccagattggtgtatttactgctgttcccatgattcttggtttcatccttgaatcagg 196
||||||||||||||| |||||||| |||| |||||||| ||||||||||| ||| |||
Sbjct: 373 tttccagattggtgtgtttactgcaattcctatgattctaggtttcatcctggaagaagg 432
Query: 197 tgttttaacggcttttgttcagttt-attacaatgcagttccaaatgtgctctgtatttt 255
||| | ||||||||||| ||| || ||||| |||||||||||| | ||||| |||||||
Sbjct: 433 tgtcctgacggcttttgt-cagcttcattaccatgcagttccaactatgctccgtatttt 491
Query: 256 ttactttctcacttggaacaagaacccactactttggccgtgcaatattacatggaggtg 315
| || ||||| ||||| ||||| || ||||| ||||| || ||||| | ||||||||||
Sbjct: 492 tcacgttctcccttgggacaaggactcactattttggtcgcacaatactgcatggaggtg 551
Query: 316 caaagtatagagcaaccggtagaggttttgtggtac 351
|||||||||||||||| ||||| |||||||||||||
Sbjct: 552 caaagtatagagcaactggtaggggttttgtggtac 587
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 246 bits (124), Expect = 4e-064
Identities = 285/336 (84%), Gaps = 2/336 (0%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctggccttatctggtgttggagaatcaattca 76
|||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct: 4595 gtacatatttctctatggtaaaacctatctggctttatctggtgttggagaatcaattca 4654
Query: 77 aaatagagcggatatactgcagaacgcagccttgaatgctgctctgaacactcaatttct 136
|||||| |||||||||| | || | ||| |||| ||||||||||| || |||||
Sbjct: 4655 aaatagggcggatatacagggaaatgaagcattgagcatagctctgaacacccagtttct 4714
Query: 137 tttccagattggtgtatttactgctgttcccatgattcttggtttcatccttgaatcagg 196
||||||||||||||| |||||||| |||| |||||||| ||||||||||| ||| |||
Sbjct: 4715 tttccagattggtgtgtttactgcaattcctatgattctaggtttcatcctggaagaagg 4774
Query: 197 tgttttaacggcttttgttcagttt-attacaatgcagttccaaatgtgctctgtatttt 255
||| | ||||||||||| ||| || ||||| |||||||||||| | ||||| |||||||
Sbjct: 4775 tgtcctgacggcttttgt-cagcttcattaccatgcagttccaactatgctccgtatttt 4833
Query: 256 ttactttctcacttggaacaagaacccactactttggccgtgcaatattacatggaggtg 315
| || ||||| ||||| ||||| || ||||| ||||| || ||||| | ||||||||||
Sbjct: 4834 tcacgttctcccttgggacaaggactcactattttggtcgcacaatactgcatggaggtg 4893
Query: 316 caaagtatagagcaaccggtagaggttttgtggtac 351
|||||||||||||||| ||||| |||||||||||||
Sbjct: 4894 caaagtatagagcaactggtaggggttttgtggtac 4929
>gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008J21f, mRNA sequence
Length = 504
Score = 182 bits (92), Expect = 5e-045
Identities = 202/236 (85%), Gaps = 2/236 (0%)
Strand = Plus / Plus
Query: 117 gctctgaacactcaatttcttttccagattggtgtatttactgctgttcccatgattctt 176
||||||||||| || |||||||||||||||||||| |||||||| |||| ||||||||
Sbjct: 31 gctctgaacacccagtttcttttccagattggtgtgtttactgcaattcctatgattcta 90
Query: 177 ggtttcatccttgaatcaggtgttttaacggcttttgttcagttt-attacaatgcagtt 235
||||||||||| ||| |||||| | ||||||||||| ||| || ||||| ||||||||
Sbjct: 91 ggtttcatcctggaagaaggtgtcctgacggcttttgt-cagcttcattaccatgcagtt 149
Query: 236 ccaaatgtgctctgtattttttactttctcacttggaacaagaacccactactttggccg 295
|||| | ||||| |||||||| || ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 150 ccaactatgctccgtatttttcacgttctcccttgggacaaggactcactattttggtcg 209
Query: 296 tgcaatattacatggaggtgcaaagtatagagcaaccggtagaggttttgtggtac 351
||||| | |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 210 cacaatactgcatggaggtgcaaagtatagagcaactggtaggggttttgtggtac 265
>gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10J09
5-PRIME, mRNA sequence
Length = 426
Score = 127 bits (64), Expect = 3e-028
Identities = 124/144 (86%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctggccttatctggtgttggagaatcaattca 76
|||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct: 283 gtacatatttctctatggtaaaacctatctggctttatctggtgttggagaatcaattca 342
Query: 77 aaatagagcggatatactgcagaacgcagccttgaatgctgctctgaacactcaatttct 136
|||||| |||||||||| | || | ||| |||| ||||||||||| || |||||
Sbjct: 343 aaatagggcggatatacagggaaatgaagcattgagcatagctctgaacacccagtttct 402
Query: 137 tttccagattggtgtatttactgc 160
||||||||||||||| ||||||||
Sbjct: 403 tttccagattggtgtgtttactgc 426
>gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. vulgare cDNA clone HX10D22
5-PRIME, mRNA sequence
Length = 478
Score = 95.6 bits (48), Expect = 1e-018
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 244 gctctgtattttttactttctcacttggaacaagaacccactactttggccgtgcaatat 303
|||| |||||||| || ||||| ||||| ||||| || ||||| ||||| || |||||
Sbjct: 1 gctccgtatttttcacgttctcccttgggacaaggactcactattttggtcgcacaatac 60
Query: 304 tacatggaggtgcaaagtatagagcaaccggtagaggttttgtggtac 351
| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 61 tgcatggaggtgcaaagtatagagcaactggtaggggttttgtggtac 108
>gb|BQ134680.1|BQ134680 LP30153 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-153
similar to Hexaprenyldihydroxybenzoate
methyltransferase,(S)-scoulerine 9-O-methyltransferase,
mRNA sequence
Length = 255
Score = 52.0 bits (26), Expect = 1e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 345 gtggtacctcggccgcgaccacgcta 370
||||||||||||||||||||||||||
Sbjct: 177 gtggtacctcggccgcgaccacgcta 202
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 101 gtacctcggccgcgaccacgcta 79
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 353 gcggccgcccgggcaggtac 334
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 348 gtacctcggccgcgaccacgcta 370
>gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_J04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 348 gtacctcggccgcgaccacgcta 370
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 348 gtacctcggccgcgaccacgcta 370
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 101 gtacctcggccgcgaccacgcta 79
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 519 gcggccgcccgggcaggtac 500
>gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L03 5', mRNA sequence
Length = 413
Score = 46.1 bits (23), Expect = 8e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 334 gtacctcggccgcgaccacgcta 356
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacat 22
||||||||||||||||||||||
Sbjct: 260 gcggccgcccgggcaggtacat 239
>gb|BM371400.1|BM371400 EBma08_SQ002_J07_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J07 5', mRNA sequence
Length = 379
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 302 acctcggccgcgaccacgcta 322
>gb|BM371413.1|BM371413 EBma08_SQ002_K05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K05 5', mRNA sequence
Length = 379
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 302 acctcggccgcgaccacgcta 322
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 99 acctcggccgcgaccacgcta 79
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 360 gcggccgcccgggcaggtac 341
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 261 gcggccgcccgggcaggtaca 241
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 254 gcggccgcccgggcaggtac 273
>gb|BQ134691.1|BQ134691 LP30188 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-188
similar to Germin, mRNA sequence
Length = 557
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 482 acctcggccgcgaccacgcta 502
>gb|BQ134696.1|BQ134696 LP20015 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-15
similar to S-adenosylmethionine decarboxylase, mRNA
sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 406 acctcggccgcgaccacgcta 426
>gb|BQ294513.1|BQ294513 LP10226 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-226,
mRNA sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 515 acctcggccgcgaccacgcta 535
>gb|BQ294528.1|BQ294528 LP10288 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-288,
mRNA sequence
Length = 310
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 286 acctcggccgcgaccacgcta 306
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 99 acctcggccgcgaccacgcta 79
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 433 gcggccgcccgggcaggtac 414
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage
of kernel Hordeum vulgare subsp. vulgare cDNA clone
1-7, mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 10 gcggccgcccgggcaggtac 29
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 283 gcggccgcccgggcaggtac 302
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 290 gcggccgcccgggcaggtac 271
>gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-20,
mRNA sequence
Length = 216
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtaca 21
||||||||||||||||||||
Sbjct: 212 cggccgcccgggcaggtaca 193
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 347 gcggccgcccgggcaggtac 328
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 281 gcggccgcccgggcaggtac 262
>gb|BQ135350.1|BQ135350 LP10104 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-104
similar to Arabidopsis putative tyrosyl-tRNA synthetase,
Accession No. AY075664, mRNA sequence
Length = 427
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 351 cctcggccgcgaccacgcta 370
||||||||||||||||||||
Sbjct: 356 cctcggccgcgaccacgcta 375
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 103
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 103
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
similar to A. thaliana AtRer1A, Accession No. AY044321,
mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.049
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtac 342
Score = 38.2 bits (19), Expect = 0.19
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 330 gcggccgcccgggcaggta 312
>gb|BM928830.1|BM928830 LP10002 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-2
similar to Chloroplast L1-like ribosomal protein, mRNA
sequence
Length = 575
Score = 38.2 bits (19), Expect = 0.19
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 347 ggtacctcggccgcgacca 365
|||||||||||||||||||
Sbjct: 23 ggtacctcggccgcgacca 5
>gb|AJ582221.1|AJ582221 AJ582221 Hordeum vulgare subsp. vulgare 7 d after germination
Hordeum vulgare subsp. vulgare cDNA clone CJP121, mRNA
sequence
Length = 723
Score = 38.2 bits (19), Expect = 0.19
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 352 ctcggccgcgaccacgcta 370
|||||||||||||||||||
Sbjct: 51 ctcggccgcgaccacgcta 33
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,700
Number of Sequences: 312970
Number of extensions: 26700
Number of successful extensions: 6836
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6758
Number of HSP's gapped (non-prelim): 75
length of query: 370
length of database: 175,134,539
effective HSP length: 18
effective length of query: 352
effective length of database: 169,501,079
effective search space: 59664379808
effective search space used: 59664379808
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)