BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAE37h07.yg.2.1
         (642 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE559011.2|BE559011  HV_CEb0022E12f Hordeum vulgare seedl...   129   1e-028
gb|BF616755.1|BF616755  HVSMEc0012I18f Hordeum vulgare seedl...    46   0.001
gb|BF627189.2|BF627189  HVSMEb0004D01f Hordeum vulgare seedl...    46   0.001
gb|BG369637.1|BG369637  HVSMEi0025E14f Hordeum vulgare 20 DA...    46   0.001
gb|BJ469639.1|BJ469639  BJ469639 K. Sato unpublished cDNA li...    46   0.001
gb|BJ473076.1|BJ473076  BJ473076 K. Sato unpublished cDNA li...    46   0.001
gb|CA027060.1|CA027060  HZ57M12r HZ Hordeum vulgare subsp. v...    46   0.001

>gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedling green leaf EST library
           HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
           vulgare cDNA clone HV_CEb0022E12f, mRNA sequence
          Length = 730

 Score =  129 bits (65), Expect = 1e-028
 Identities = 110/129 (85%)
 Strand = Plus / Minus

                                                                       
Query: 325 aggagagcaacctcaagcgctttgacaaagtgacttnnagaatagagcctataattttca 384
           ||||||||||||||||||||||| |||||||| |||  |||||||||||||||||| |||
Sbjct: 291 aggagagcaacctcaagcgctttcacaaagtggcttcgagaatagagcctataattgtca 232

                                                                       
Query: 385 gcaaacnttatgtgccnnacaacaaaacctctnnnagtagcacgatactttgcancnnna 444
           |||||  ||||||| |  |||||||||||||    ||||||||||| ||||||| |   |
Sbjct: 231 gcaaattttatgtggcgaacaacaaaacctcgtccagtagcacgatgctttgcaccacca 172

                    
Query: 445 tgaaggatt 453
           |||||||||
Sbjct: 171 tgaaggatt 163



>gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedling shoot EST library
           HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
           subsp. vulgare cDNA clone HVSMEc0012I18f, mRNA sequence
          Length = 762

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
           |||| ||||||||||| ||||||||||||||
Sbjct: 348 tcttctgccactcgaacccagaagggttgaa 318



>gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedling shoot EST library
           HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEb0004D01f, mRNA sequence
          Length = 765

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
           |||| ||||||||||| ||||||||||||||
Sbjct: 115 tcttctgccactcgaacccagaagggttgaa 85



>gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
           (20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
           HVSMEi0025E14f, mRNA sequence
          Length = 725

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
           |||||||||||| ||| ||||||||||||||
Sbjct: 269 tcttttgccactggaacccagaagggttgaa 239



>gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal27j14 5', mRNA sequence
          Length = 604

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
           |||| ||||||||||| ||||||||||||||
Sbjct: 454 tcttctgccactcgaacccagaagggttgaa 424



>gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal40n15 5', mRNA sequence
          Length = 614

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
           |||| ||||||||||| ||||||||||||||
Sbjct: 465 tcttctgccactcgaacccagaagggttgaa 435



>gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57M12
           5-PRIME, mRNA sequence
          Length = 384

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
           |||| ||||||||||| ||||||||||||||
Sbjct: 169 tcttctgccactcgaacccagaagggttgaa 139



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,698
Number of Sequences: 312970
Number of extensions: 31698
Number of successful extensions: 6951
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6944
Number of HSP's gapped (non-prelim): 7
length of query: 642
length of database: 175,134,539
effective HSP length: 19
effective length of query: 623
effective length of database: 169,188,109
effective search space: 105404191907
effective search space used: 105404191907
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)