BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD4g02.sg.2.1
(308 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. v... 250 2e-065
gb|BU975384.1|BU975384 HB31F04r BC Hordeum vulgare subsp. v... 250 2e-065
gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Libr... 228 8e-059
gb|BM816328.1|BM816328 HC108D12_SK.ab1 HC Hordeum vulgare s... 182 4e-045
gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. v... 157 3e-037
gb|CA015170.1|CA015170 HT13H22r HT Hordeum vulgare subsp. v... 157 3e-037
gb|CB882476.1|CB882476 HL01P12w HL Hordeum vulgare subsp. v... 153 4e-036
gb|CA013134.1|CA013134 HT07H24r HT Hordeum vulgare subsp. v... 151 2e-035
gb|CK123613.1|CK123613 BES1824104l12 BES1824 Hordeum vulgar... 149 6e-035
gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA,... 137 2e-031
gb|BI952869.1|BI952869 HVSMEm0008B04f Hordeum vulgare green... 133 4e-030
gb|BM816326.1|BM816326 HB02F03_T3.ab1 HB Hordeum vulgare su... 133 4e-030
gb|BM816327.1|BM816327 HB106A04_SK.ab1 HB Hordeum vulgare s... 129 6e-029
gb|BE216452.2|BE216452 HV_CEb0010I13f Hordeum vulgare seedl... 125 9e-028
gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. v... 98 2e-019
gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. v... 76 7e-013
gb|AV934345.1|AV934345 AV934345 K. Sato unpublished cDNA li... 68 2e-010
gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA li... 66 7e-010
gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedl... 56 7e-007
gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA li... 56 7e-007
gb|CA014629.1|CA014629 HT11O08r HT Hordeum vulgare subsp. v... 56 7e-007
gb|BU980650.1|BU980650 HA21E13r HA Hordeum vulgare subsp. v... 42 0.010
>gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. vulgare cDNA clone HB19L11
5-PRIME, mRNA sequence
Length = 569
Score = 250 bits (126), Expect = 2e-065
Identities = 258/302 (85%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||||||
Sbjct: 401 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaa 342
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 341 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 282
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 281 gggactccaagggggtcttccccgatgtagccactcgggtgagcgccaactgggttgaag 222
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtct 242
||||| |||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||
Sbjct: 221 tacctcagcagtatgatcttccagtcggggtccgagcgctggaggtcacggcagatgtct 162
Query: 243 tcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggtg 302
||||| ||||||||||| || || || || ||||| ||| |||||||||| || ||||||
Sbjct: 161 tcaatgacaagctttgttcggccgtacgggttggtcgcggagagcgggaactcctcggtg 102
Query: 303 ca 304
||
Sbjct: 101 ca 100
>gb|BU975384.1|BU975384 HB31F04r BC Hordeum vulgare subsp. vulgare cDNA clone HB31F04
5-PRIME, mRNA sequence
Length = 501
Score = 250 bits (126), Expect = 2e-065
Identities = 258/302 (85%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||||||
Sbjct: 464 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaa 405
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 404 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 345
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 344 gggactccaagggggtcttccccgatgtagccactcgggtgagcgccaactgggttgaag 285
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtct 242
||||| |||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||
Sbjct: 284 tacctcagcagtatgatcttccagtcggggtccgagcgctggaggtcacggcagatgtct 225
Query: 243 tcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggtg 302
||||| ||||||||||| || || || || ||||| ||| |||||||||| || ||||||
Sbjct: 224 tcaatgacaagctttgttcggccgtacgggttggtcgcggagagcgggaactcctcggtg 165
Query: 303 ca 304
||
Sbjct: 164 ca 163
>gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.H08, mRNA sequence
Length = 1212
Score = 228 bits (115), Expect = 8e-059
Identities = 257/303 (84%), Gaps = 1/303 (0%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| |||||| ||||||||
Sbjct: 345 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtgggtcccgtaa 286
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 285 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 226
Query: 123 gggacaccgcagggg-tcttcgccgatgtacccgcttggatgagcgccaacggggttgaa 181
||||| ||| ||||| ||||| |||||||| || || || ||||||||||| ||||||||
Sbjct: 225 gggactccgaagggggtcttccccgatgtagccactcgggtgagcgccaactgggttgaa 166
Query: 182 gtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtc 241
|||||| |||||||||||||||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 165 gtacctcagcagtatgatcttccagtcggggtccgagcgctggaggtcacggcagatgtc 106
Query: 242 ttcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggt 301
|||||| ||||||||||| || || || || ||||| || ||||||||| || |||||
Sbjct: 105 ttcaatgacaagctttgttcggccgtacgggttggtcccggagagcgggagctcctcggt 46
Query: 302 gca 304
|||
Sbjct: 45 gca 43
>gb|BM816328.1|BM816328 HC108D12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108D12_SK.ab1 similar to UDP-glucose
4-epimerase,Aldose 1-epimerase,, mRNA sequence
Length = 860
Score = 182 bits (92), Expect = 4e-045
Identities = 190/223 (85%)
Strand = Plus / Minus
Query: 82 tcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtctt 141
|||| |||||||||||||| || ||||||||||||||||| ||||| || |||||||
Sbjct: 825 tcccgacagcgacttgctggacatagggcatcaggttgttggggactccaagngggtctt 766
Query: 142 cgccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatct 201
| || ||||| || ||||| || |||||||| |||||||||||||| |||||||||||||
Sbjct: 765 ccccaatgtagccacttgggtgggcgccaaccgggttgaagtacctcagcagtatgatct 706
Query: 202 tccagtcggggtcggagcggtggacgtcgcggcagatgtcttcaatcacaagctttgtcc 261
|||||||||||| || || |||| ||| ||||||||||||||||| ||||||||||| |
Sbjct: 705 cccagtcggggtccgaacgctggaggtcacggcagatgtcttcaatgacaagctttgttc 646
Query: 262 gcccatagggattggtggcgcagagcgggaattcttcggtgca 304
| || || || ||||| ||| |||||||||| || ||||||||
Sbjct: 645 ggccgtacgggttggtcgcggagagcgggaactcctcggtgca 603
>gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. vulgare cDNA clone HT08A11
5-PRIME, mRNA sequence
Length = 646
Score = 157 bits (79), Expect = 3e-037
Identities = 189/223 (84%), Gaps = 2/223 (0%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||||||
Sbjct: 232 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaa 173
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 172 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 113
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| || ||||||||| |||||||| || || || ||||||||||| ||||| |||
Sbjct: 112 gggactccaagggggtcttccccgatgtagccactcgggtgagcgccaactgggtt-aag 54
Query: 183 tacctgagcagtatgatcttccagtcggggtcggagcggtgga 225
||||| |||||||| ||||||||||||||||| ||||| ||||
Sbjct: 53 tacctcagcagtat-atcttccagtcggggtccgagcgctgga 12
>gb|CA015170.1|CA015170 HT13H22r HT Hordeum vulgare subsp. vulgare cDNA clone HT13H22
5-PRIME, mRNA sequence
Length = 640
Score = 157 bits (79), Expect = 3e-037
Identities = 127/143 (88%)
Strand = Plus / Minus
Query: 162 tgagcgccaacggggttgaagtacctgagcagtatgatcttccagtcggggtcggagcgg 221
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 625 tgagcgccaactgggttgaagtacctcagcagtatgatcttccagtcggggtccgagcgc 566
Query: 222 tggacgtcgcggcagatgtcttcaatcacaagctttgtccgcccatagggattggtggcg 281
|||| ||| ||||||||||||||||| ||||||||||| || || || || ||||| |||
Sbjct: 565 tggaggtcacggcagatgtcttcaatgacaagctttgttcggccgtacgggttggtcgcg 506
Query: 282 cagagcgggaattcttcggtgca 304
|||||||||| || ||||||||
Sbjct: 505 gagagcgggaactcctcggtgca 483
>gb|CB882476.1|CB882476 HL01P12w HL Hordeum vulgare subsp. vulgare cDNA clone HL01P12
3-PRIME, mRNA sequence
Length = 628
Score = 153 bits (77), Expect = 4e-036
Identities = 125/141 (88%)
Strand = Plus / Minus
Query: 164 agcgccaacggggttgaagtacctgagcagtatgatcttccagtcggggtcggagcggtg 223
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 628 agcgccaactgggttgaagtacctcagcagtatgatcttccagtcggggtccgagcgctg 569
Query: 224 gacgtcgcggcagatgtcttcaatcacaagctttgtccgcccatagggattggtggcgca 283
|| ||| ||||||||||||||||| ||||||||||| || || || || ||||| ||| |
Sbjct: 568 gaggtcacggcagatgtcttcaatgacaagctttgttcggccgtacgggttggtcgcgga 509
Query: 284 gagcgggaattcttcggtgca 304
||||||||| || ||||||||
Sbjct: 508 gagcgggaactcctcggtgca 488
>gb|CA013134.1|CA013134 HT07H24r HT Hordeum vulgare subsp. vulgare cDNA clone HT07H24
5-PRIME, mRNA sequence
Length = 566
Score = 151 bits (76), Expect = 2e-035
Identities = 126/143 (88%)
Strand = Plus / Minus
Query: 162 tgagcgccaacggggttgaagtacctgagcagtatgatcttccagtcggggtcggagcgg 221
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 557 tgagcgccaactgggttgaagtacctcagcagtatgatcttccagtcggggtccgagcgc 498
Query: 222 tggacgtcgcggcagatgtcttcaatcacaagctttgtccgcccatagggattggtggcg 281
|||| ||| ||||||||||||||||| ||||||||||| || || || || ||||| |||
Sbjct: 497 tggaggtcacggcagatgtcttcaatgacaagctttgttcggccgtacgggttggtcgcg 438
Query: 282 cagagcgggaattcttcggtgca 304
||||||| || || ||||||||
Sbjct: 437 gagagcggnaactcctcggtgca 415
>gb|CK123613.1|CK123613 BES1824104l12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L124 5-PRIME, mRNA sequence
Length = 791
Score = 149 bits (75), Expect = 6e-035
Identities = 125/142 (88%)
Strand = Plus / Minus
Query: 162 tgagcgccaacggggttgaagtacctgagcagtatgatcttccagtcggggtcggagcgg 221
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 754 tgagcgccaactgggttgaagtacctcagcagtatgatcttccagtcggggtccgagcgc 695
Query: 222 tggacgtcgcggcagatgtcttcaatcacaagctttgtccgcccatagggattggtggcg 281
|||| ||| || |||||||||||||| ||||||||||| || || || || ||||| |||
Sbjct: 694 tggaggtcacgncagatgtcttcaatgacaagctttgttcggccgtacgggttggtcgcg 635
Query: 282 cagagcgggaattcttcggtgc 303
|||||||||| || |||||||
Sbjct: 634 gagagcgggaactcctcggtgc 613
>gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_C16 5', mRNA sequence
Length = 398
Score = 137 bits (69), Expect = 2e-031
Identities = 156/185 (84%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||||||
Sbjct: 188 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaa 129
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 128 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 69
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 68 gggactccaagggggtcttccccgatgtagccactcgggtgagcgccaaccgggttgaag 9
Query: 183 tacct 187
|||||
Sbjct: 8 tacct 4
>gb|BI952869.1|BI952869 HVSMEm0008B04f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0008B04f, mRNA sequence
Length = 744
Score = 133 bits (67), Expect = 4e-030
Identities = 163/195 (83%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||| | ||||| ||||||||||||||| ||||||| ||||||||
Sbjct: 200 acaacatggatgtagtcaggtacccctgtcccatccttggtgttgtagtcggtcccgtaa 141
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 140 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 81
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 80 gggactccaagggggtcttccccgatgtagccactcgggtgagcgccaaccgggttgaag 21
Query: 183 tacctgagcagtatg 197
| ||| | |||||||
Sbjct: 20 tccctcaccagtatg 6
>gb|BM816326.1|BM816326 HB02F03_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02F03_T3.ab1 similar to UDP-glucose 4-epimerase,Aldose
1-epimerase,, mRNA sequence
Length = 815
Score = 133 bits (67), Expect = 4e-030
Identities = 115/131 (87%)
Strand = Plus / Minus
Query: 174 gggttgaagtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcgg 233
|||||||||||||| |||||||||||||||||||||||||| || || |||| ||| |||
Sbjct: 733 gggttgaagtacctcagcagtatgatcttccagtcggggtccgaacgctggaggtcacgg 674
Query: 234 cagatgtcttcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaat 293
|||||||||||||| ||||||||||| || || || || ||||| ||| ||||||||||
Sbjct: 673 cagatgtcttcaatgacaagctttgttcggccgtacgggttggtcgcggagagcgggaac 614
Query: 294 tcttcggtgca 304
|| ||||||||
Sbjct: 613 tcctcggtgca 603
>gb|BM816327.1|BM816327 HB106A04_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106A04_SK.ab1 similar to UDP-glucose
4-epimerase,Aldose 1-epimerase,, mRNA sequence
Length = 883
Score = 129 bits (65), Expect = 6e-029
Identities = 122/140 (87%), Gaps = 1/140 (0%)
Strand = Plus / Minus
Query: 165 gcgccaacggggttgaagtacctgagcagtatgatcttccagtcggggtcggagcggtgg 224
|||||||| |||| ||||||||| |||||||||||||||||||||||||| || || |||
Sbjct: 755 gcgccaacngggt-gaagtacctcagcagtatgatcttccagtcggggtccgaacgctgg 697
Query: 225 acgtcgcggcagatgtcttcaatcacaagctttgtccgcccatagggattggtggcgcag 284
| ||| ||||||||||||||||| ||||||||||| || || || || ||||| ||| ||
Sbjct: 696 aggtcacggcagatgtcttcaatgacaagctttgttcggccgtacgggttggtcgcggag 637
Query: 285 agcgggaattcttcggtgca 304
|||||||| || ||||||||
Sbjct: 636 agcgggaactcctcggtgca 617
>gb|BE216452.2|BE216452 HV_CEb0010I13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010I13f, mRNA sequence
Length = 697
Score = 125 bits (63), Expect = 9e-028
Identities = 108/123 (87%)
Strand = Plus / Minus
Query: 182 gtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgtc 241
|||||| |||||||||||||||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 697 gtacctcagcagtatgatcttccagtcggggtccgagcgctggaggtcacggcagatgtc 638
Query: 242 ttcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggt 301
|||||| ||||||||||| || || || || ||||| ||| |||||||||| || |||||
Sbjct: 637 ttcaatgacaagctttgttcggccgtacgggttggtcgcggagagcgggaactcctcggt 578
Query: 302 gca 304
|||
Sbjct: 577 gca 575
>gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. vulgare cDNA clone HF25N16
5-PRIME, mRNA sequence
Length = 633
Score = 97.6 bits (49), Expect = 2e-019
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||||||
Sbjct: 145 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaa 86
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
||||| || ||| |||||| |||||||||||||| || |||||||||||||||||
Sbjct: 85 accgtcagcgcaggccgcctcccgacagcgacttgctggacatagggcatcaggttgttg 26
Query: 123 gggac 127
|||||
Sbjct: 25 gggac 21
>gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. vulgare cDNA clone HM11A08
5-PRIME, mRNA sequence
Length = 642
Score = 75.8 bits (38), Expect = 7e-013
Identities = 99/118 (83%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||||||
Sbjct: 139 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaa 80
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
||||| || ||| |||||| |||||||||||| | || ||||||||||||||||
Sbjct: 79 accgtcagcgcaggccgcctcccgacagcgacttgc-ggacatagggcatcaggttgt 23
>gb|AV934345.1|AV934345 AV934345 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8e17 5', mRNA sequence
Length = 595
Score = 67.9 bits (34), Expect = 2e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 231 cggcagatgtcttcaatcacaagctttgtccgcccatagggattggtggcgcagagcggg 290
||||||||||||||||| ||||||||||| || || || || ||||| ||| ||||||||
Sbjct: 595 cggcagatgtcttcaatgacaagctttgttcggccgtacgggttggtcgcggagagcggg 536
Query: 291 aattcttcggtgca 304
|| || ||||||||
Sbjct: 535 aactcctcggtgca 522
>gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8e17 3', mRNA sequence
Length = 719
Score = 65.9 bits (33), Expect = 7e-010
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| |||||||| ||||| ||||| || |||||||||||| ||||||| ||||||||
Sbjct: 648 acaacatggatgtagtcacgtacccctgttccatccttggtgttgtagtcggtcccgtaa 707
Query: 63 accgt 67
|||||
Sbjct: 708 accgt 712
>gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E08f, mRNA sequence
Length = 790
Score = 56.0 bits (28), Expect = 7e-007
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||||||||| |||||||| ||| ||||||| |||||||| || || || | |||||
Sbjct: 153 cctcccaacagcaacttgctgaacgaagggcataaggttgtttggaactccacgtgggtc 94
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || || ||||| ||||| |||||||| |||||
Sbjct: 93 ttcaccaaggtatccactggggtgagccccaaccgggttgaaatacct 46
>gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p11 5', mRNA sequence
Length = 540
Score = 56.0 bits (28), Expect = 7e-007
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||||||||| |||||||| ||| ||||||| |||||||| || || || | |||||
Sbjct: 177 cctcccaacagcaacttgctgaacgaagggcataaggttgtttggaactccacgtgggtc 118
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || || ||||| ||||| |||||||| |||||
Sbjct: 117 ttcaccaaggtatccactggggtgagccccaaccgggttgaaatacct 70
>gb|CA014629.1|CA014629 HT11O08r HT Hordeum vulgare subsp. vulgare cDNA clone HT11O08
5-PRIME, mRNA sequence
Length = 656
Score = 56.0 bits (28), Expect = 7e-007
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 237 atgtcttcaatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattct 296
||||||||||| ||||||||||| || || || || ||||| ||| |||||||||| ||
Sbjct: 656 atgtcttcaatgacaagctttgttcggccgtacgggttggtcgcggagagcgggaactcc 597
Query: 297 tcggtgca 304
||||||||
Sbjct: 596 tcggtgca 589
>gb|BU980650.1|BU980650 HA21E13r HA Hordeum vulgare subsp. vulgare cDNA clone HA21E13
5-PRIME, mRNA sequence
Length = 374
Score = 42.1 bits (21), Expect = 0.010
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 244 caatcacaagctttgtccgcccatagggattggtggcgcagagcgggaattcttcggtgc 303
|||| ||||||||||| || || || || ||||| ||| |||||||||| || |||||||
Sbjct: 374 caatgacaagctttgttcggccgtacgggttggtcgcggagagcgggaactcctcggtgc 315
Query: 304 a 304
|
Sbjct: 314 a 314
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,774
Number of Sequences: 312970
Number of extensions: 23774
Number of successful extensions: 5315
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5279
Number of HSP's gapped (non-prelim): 33
length of query: 308
length of database: 175,134,539
effective HSP length: 18
effective length of query: 290
effective length of database: 169,501,079
effective search space: 49155312910
effective search space used: 49155312910
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)