BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD15f02.sg.3.2
(2357 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE421817.1|BE421817 HWM015cA.05r ITEC HWM Barley Leaf Li... 470 e-130
gb|AV926737.1|AV926737 AV926737 K. Sato unpublished cDNA li... 460 e-127
gb|BF623872.2|BF623872 HVSMEa0007G18f Hordeum vulgare seedl... 428 e-118
gb|AV926738.1|AV926738 AV926738 K. Sato unpublished cDNA li... 387 e-105
gb|BI950960.1|BI950960 HVSMEl0023N03f Hordeum vulgare spike... 347 1e-093
gb|CA019569.1|CA019569 HV12G15r HV Hordeum vulgare subsp. v... 341 6e-092
gb|BE558814.2|BE558814 HV_CEb0020H08f Hordeum vulgare seedl... 272 5e-071
gb|BF260808.2|BF260808 HVSMEf0022P24f Hordeum vulgare seedl... 238 7e-061
gb|BM817362.1|BM817362 HC111C03_T3.ab1 HC Hordeum vulgare s... 212 4e-053
gb|BQ464411.1|BQ464411 HF02D07r HF Hordeum vulgare subsp. v... 190 1e-046
gb|AV931636.1|AV931636 AV931636 K. Sato unpublished cDNA li... 178 6e-043
gb|BF263284.2|BF263284 HV_CEa0006F12f Hordeum vulgare seedl... 167 2e-039
gb|AV909169.1|AV909169 AV909169 K. Sato unpublished cDNA li... 153 3e-035
gb|BM375072.2|BM375072 EBem06_SQ002_E07_R embryo, 21 DPA, n... 149 5e-034
gb|BQ768564.1|BQ768564 EBro08_SQ012_F04_R root, 3 week, dro... 129 5e-028
gb|AL505480.1|AL505480 AL505480 Hordeum vulgare Barke roots... 115 7e-024
gb|AL506007.1|AL506007 AL506007 Hordeum vulgare Barke devel... 101 1e-019
gb|BJ462606.1|BJ462606 BJ462606 K. Sato unpublished cDNA li... 86 6e-015
gb|BQ459933.1|BQ459933 HA07K21r HA Hordeum vulgare subsp. v... 86 6e-015
gb|BU987679.1|BU987679 HF15H06r HF Hordeum vulgare subsp. v... 86 6e-015
gb|AV931635.1|AV931635 AV931635 K. Sato unpublished cDNA li... 78 1e-012
gb|CA015716.1|CA015716 HV12G15u HV Hordeum vulgare subsp. v... 72 9e-011
gb|BI949968.1|BI949968 HVSMEl0017F18f Hordeum vulgare spike... 70 4e-010
gb|BJ462700.1|BJ462700 BJ462700 K. Sato unpublished cDNA li... 66 6e-009
gb|AL502745.1|AL502745 AL502745 Hordeum vulgare Barke roots... 60 4e-007
gb|BF616784.2|BF616784 HVSMEc0012L03f Hordeum vulgare seedl... 58 1e-006
gb|AL509318.1|AL509318 AL509318 Hordeum vulgare Barke devel... 50 3e-004
gb|AV833071.1|AV833071 AV833071 K. Sato unpublished cDNA li... 50 3e-004
gb|BG414701.1|BG414701 HVSMEk0003G16f Hordeum vulgare testa... 50 3e-004
gb|BJ449403.1|BJ449403 BJ449403 K. Sato unpublished cDNA li... 50 3e-004
gb|BJ449404.1|BJ449404 BJ449404 K. Sato unpublished cDNA li... 50 3e-004
gb|BJ452401.1|BJ452401 BJ452401 K. Sato unpublished cDNA li... 50 3e-004
gb|BJ456861.1|BJ456861 BJ456861 K. Sato unpublished cDNA li... 50 3e-004
gb|BJ456862.1|BJ456862 BJ456862 K. Sato unpublished cDNA li... 50 3e-004
gb|BJ448210.1|BJ448210 BJ448210 K. Sato unpublished cDNA li... 48 0.001
gb|BJ450755.1|BJ450755 BJ450755 K. Sato unpublished cDNA li... 48 0.001
gb|BQ762906.1|BQ762906 EBro02_SQ006_B14 _R root, 3 week, hy... 48 0.001
gb|BI956670.1|BI956670 HVSMEn0004K24f Hordeum vulgare rachi... 46 0.005
gb|BF259062.2|BF259062 HVSMEf0017J03f Hordeum vulgare seedl... 44 0.021
gb|BG345066.1|BG345066 HVSMEg0018I11f Hordeum vulgare pre-a... 44 0.021
gb|BG415502.1|BG415502 HVSMEk0006L23f Hordeum vulgare testa... 44 0.021
gb|BJ450068.1|BJ450068 BJ450068 K. Sato unpublished cDNA li... 44 0.021
gb|BJ462701.1|BJ462701 BJ462701 K. Sato unpublished cDNA li... 44 0.021
gb|BU972817.1|BU972817 HB22M24r BC Hordeum vulgare subsp. v... 44 0.021
gb|CA026538.1|CA026538 HZ56D06r HZ Hordeum vulgare subsp. v... 44 0.021
gb|CA026848.1|CA026848 HZ57C10r HZ Hordeum vulgare subsp. v... 44 0.021
gb|AL500976.1|AL500976 AL500976 Hordeum vulgare Barke roots... 42 0.082
gb|AV914773.1|AV914773 AV914773 K. Sato unpublished cDNA li... 42 0.082
gb|AV915859.1|AV915859 AV915859 K. Sato unpublished cDNA li... 42 0.082
gb|AV916735.1|AV916735 AV916735 K. Sato unpublished cDNA li... 42 0.082
gb|BQ470813.1|BQ470813 HX04B21r HX Hordeum vulgare subsp. v... 42 0.082
gb|BU969924.1|BU969924 HB13B01r BC Hordeum vulgare subsp. v... 42 0.082
gb|BI960062.1|BI960062 HVSMEn0023A16f Hordeum vulgare rachi... 40 0.33
gb|BQ657609.1|BQ657609 HA07K21u HA Hordeum vulgare subsp. v... 40 0.33
gb|BM376859.2|BM376859 EBem05_SQ003_G24_R embryo, 14 DPA, n... 40 0.33
gb|BM100877.2|BM100877 EBpi01_SQ002_E03_R pistil, 1 DPA, no... 40 0.33
gb|BQ768810.1|BQ768810 EBro08_SQ012_A24_R root, 3 week, dro... 40 0.33
gb|BU969004.1|BU969004 HB10D20r BC Hordeum vulgare subsp. v... 40 0.33
gb|CA000228.1|CA000228 HS09F21u HS Hordeum vulgare subsp. v... 40 0.33
>gb|BE421817.1|BE421817 HWM015cA.05r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM015cA.05, mRNA sequence
Length = 735
Score = 470 bits (237), Expect = e-130
Identities = 512/604 (84%), Gaps = 6/604 (0%)
Strand = Plus / Plus
Query: 724 aaataccatgtcaaagaatttgagaagtgcttccagatgaaatttccagcttgcaccatt 783
||||| |||||||| || |||||||| || |||||||||| ||||||||||||| | |||
Sbjct: 132 aaatatcatgtcaaggagtttgagaaatgtttccagatgagatttccagcttgctcaatt 191
Query: 784 gctgctaaaaagcacatagattcgtccactactattttggatgtgcaaggcgtgggtttc 843
||||| ||| |||| | || || | |||||||||| ||||||||||||||||||| ||
Sbjct: 192 gctgcaaaacggcacctggactcatgcactactattctggatgtgcaaggcgtgggattg 251
Query: 844 aagaacttctcgaaatctgccagagaattaatcacacgattacagaagatcgacagtgat 903
||||||||| | |||| ||| || ||| ||||||| ||| | |||||||| |||||||||
Sbjct: 252 aagaacttcgcaaaatgtgcaagggaactaatcacccgactgcagaagattgacagtgat 311
Query: 904 aactacccagagacactgtgccggatgtatataattaatgctggccaaggcttcaagatg 963
||||||||||||||| | ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 312 aactacccagagacattatgccggatgtacataattaacgctggtcaaggcttcaagatg 371
Query: 964 ttatggagcacaataaaatcattcctcgatccaaaaactgcttccaagatccatgttctt 1023
|||||| |||||||||| || || || ||||| ||||||||||| |||||||||||||||
Sbjct: 372 ttatggggcacaataaagtcttttcttgatccgaaaactgcttcaaagatccatgttctt 431
Query: 1024 gggaataagtatcaacataagttgctcgaaataattgacgagtgtgaactgccagaattt 1083
|| | ||||||||| ||||| | || |||||||| || ||| ||||| |||||||||||
Sbjct: 432 ggaaccaagtatcaaaataagctccttgaaataatcgatgagagtgaattgccagaattt 491
Query: 1084 cttggtggcaaatgcaattgt------attgaaggttgccaaagatctgacaaaggtcct 1137
|||||||||||||||| ||| || |||||| || ||||| || |||||||||
Sbjct: 492 tttggtggcaaatgcaagtgtgaagaacatggaggttgtcagagatcagataaaggtcct 551
Query: 1138 tggaaggatcccaacataataaagagagtcctcaatgacgaggcaaactacggcagacaa 1197
||||||||||||| || ||||||||| |||||||| | |||||||||||||| |||||||
Sbjct: 552 tggaaggatcccaccacaataaagagggtcctcaacggcgaggcaaactacgacagacaa 611
Query: 1198 attgtgaccatatccagcattgatggaaaaataatacgttatgctaggccagatcaccca 1257
|| ||||||||||| ||| ||||| || ||||| |||||||||||||| | | ||||
Sbjct: 612 atcgtgaccatatcaggcaccgatggcaagataatcggttatgctaggccacagcgccca 671
Query: 1258 actagaaaagggagtgatgcatctgccgagtctggatctgaagtggaagatgtaacatct 1317
| | ||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct: 672 aatggaaaaggcagtgatgcatctgctgagtctgggtctgaagtggaagatgctacatct 731
Query: 1318 ccta 1321
||||
Sbjct: 732 ccta 735
>gb|AV926737.1|AV926737 AV926737 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd23j10 5', mRNA sequence
Length = 675
Score = 460 bits (232), Expect = e-127
Identities = 555/665 (83%), Gaps = 15/665 (2%)
Strand = Plus / Plus
Query: 668 taggaaaagttgatgcaaacaagctaatacaagtgacaaccctagatcggtatgtaaaat 727
|||||||||||||||| |||||||| | ||||| ||||| |||| |||||||| ||||
Sbjct: 18 taggaaaagttgatgccaacaagctggtgcaagtaacaactatagaccggtatgtgaaat 77
Query: 728 accatgtcaaagaatttgagaagtgcttccagatgaaatttccagcttgcaccattgctg 787
| |||||||| || |||||||| || |||||||||| ||||||||||||| | |||||||
Sbjct: 78 atcatgtcaaggagtttgagaaatgtttccagatgagatttccagcttgctcaattgctg 137
Query: 788 ctaaaaagcacatagattcgtccactactattttggatgtgcaaggcgtgggtttcaaga 847
| ||| |||| | || || | |||||||||| ||||||||||||||||| |
Sbjct: 138 caaaacggcacctggactcatgcactactattctggatgtgcaaggcgtg---------a 188
Query: 848 acttctcgaaatctgccagagaattaatcacacgattacagaagatcgacagtgataact 907
||||| | |||| ||| || ||| ||||||| ||| | |||||||| |||||||||||||
Sbjct: 189 acttcgcaaaatgtgcaagggaactaatcacccgactgcagaagattgacagtgataact 248
Query: 908 acccagagacactgtgccggatgtatataattaatgctggccaaggcttcaagatgttat 967
||||||||||| | ||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 249 acccagagacattatgccggatgtacataattaacgctggtcaaggcttcaagatgttat 308
Query: 968 ggagcacaataaaatcattcctcgatccaaaaactgcttccaagatccatgttcttggga 1027
|| |||||||||| || || || ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 309 ggggcacaataaagtcttttcttgatccgaaaactgcttcaaagatccatgttcttggaa 368
Query: 1028 ataagtatcaacataagttgctcgaaataattgacgagtgtgaactgccagaatttcttg 1087
||||||||| ||||| | || |||||||| || ||| ||||| ||||||||||| |||
Sbjct: 369 ccaagtatcaaaataagctccttgaaataatcgatgagagtgaattgccagaattttttg 428
Query: 1088 gtggcaaatgcaattgt------attgaaggttgccaaagatctgacaaaggtccttgga 1141
||||||||||||| ||| || |||||| || ||||| || |||||||||||||
Sbjct: 429 gtggcaaatgcaagtgtgaagaacatggaggttgtcagagatcagataaaggtccttgga 488
Query: 1142 aggatcccaacataataaagagagtcctcaatgacgaggcaaactacggcagacaaattg 1201
||||||||| || ||||||||| |||||||| | |||||||||||||| ||||||||| |
Sbjct: 489 aggatcccaccacaataaagagggtcctcaacggcgaggcaaactacgacagacaaatcg 548
Query: 1202 tgaccatatccagcattgatggaaaaataatacgttatgctaggccagatcacccaacta 1261
|||||||||| ||| ||||| || || || |||||||||||||| | | ||||| |
Sbjct: 549 tgaccatatcaggcaccgatggcaagatnatcggttatgctaggccacagcgcccaaatg 608
Query: 1262 gaaaagggagtgatgcatctgccgagtctggatctgaagtggaagatgtaacatctccta 1321
||||||| |||||||||||||| |||||||| |||||||||||||||| |||||| |||
Sbjct: 609 gaaaaggcagtgatgcatctgctgagtctgggtctgaagtggaagatgctacatctncta 668
Query: 1322 ctgca 1326
|||||
Sbjct: 669 ctgca 673
>gb|BF623872.2|BF623872 HVSMEa0007G18f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0007G18f, mRNA sequence
Length = 720
Score = 428 bits (216), Expect = e-118
Identities = 451/530 (85%), Gaps = 6/530 (1%)
Strand = Plus / Plus
Query: 810 cactactattttggatgtgcaaggcgtgggtttcaagaacttctcgaaatctgccagaga 869
|||||||||| ||||||||||||||||||| || ||||||||| | |||| ||| || ||
Sbjct: 37 cactactattctggatgtgcaaggcgtgggattgaagaacttcgcaaaatgtgcaaggga 96
Query: 870 attaatcacacgattacagaagatcgacagtgataactacccagagacactgtgccggat 929
| ||||||| ||| | |||||||| |||||||||||||||||||||||| | ||||||||
Sbjct: 97 actaatcacccgactgcagaagattgacagtgataactacccagagacattatgccggat 156
Query: 930 gtatataattaatgctggccaaggcttcaagatgttatggagcacaataaaatcattcct 989
||| |||||||| ||||| ||||||||||||||||||||| |||||||||| || || ||
Sbjct: 157 gtacataattaacgctggtcaaggcttcaagatgttatggggcacaataaagtcttttct 216
Query: 990 cgatccaaaaactgcttccaagatccatgttcttgggaataagtatcaacataagttgct 1049
||||| ||||||||||| ||||||||||||||||| | ||||||||| ||||| | ||
Sbjct: 217 tgatccgaaaactgcttcaaagatccatgttcttggaaccaagtatcaaaataagctcct 276
Query: 1050 cgaaataattgacgagtgtgaactgccagaatttcttggtggcaaatgcaattgt----- 1104
|||||||| || ||| ||||| ||||||||||| |||||||||||||||| |||
Sbjct: 277 tgaaataatcgatgagagtgaattgccagaattttttggtggcaaatgcaagtgtgaaga 336
Query: 1105 -attgaaggttgccaaagatctgacaaaggtccttggaaggatcccaacataataaagag 1163
|| |||||| || ||||| || |||||||||||||||||||||| || |||||||||
Sbjct: 337 acatggaggttgtcagagatcagataaaggtccttggaaggatcccaccacaataaagag 396
Query: 1164 agtcctcaatgacgaggcaaactacggcagacaaattgtgaccatatccagcattgatgg 1223
||||| || | |||||||||||||| ||||||||| ||||||||||| |||| |||||
Sbjct: 397 ggtccttaacggcgaggcaaactacgacagacaaatcgtgaccatatcaagcaccgatgg 456
Query: 1224 aaaaataatacgttatgctaggccagatcacccaactagaaaagggagtgatgcatctgc 1283
|| ||||| ||||||||| |||| | | ||||| | ||||||| ||||||||||||||
Sbjct: 457 caagataatcggttatgctangccacagcgcccaaatggaaaaggcagtgatgcatctgc 516
Query: 1284 cgagtctggatctgaagtggaagatgtaacatctcctactgcatcaagga 1333
|||||||| |||||||||||||||| |||||| |||||||| ||||||
Sbjct: 517 tgagtctgggtctgaagtggaagatgctacatcttctactgcaccaagga 566
>gb|AV926738.1|AV926738 AV926738 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd23j11 5', mRNA sequence
Length = 575
Score = 387 bits (195), Expect = e-105
Identities = 460/550 (83%), Gaps = 15/550 (2%)
Strand = Plus / Plus
Query: 668 taggaaaagttgatgcaaacaagctaatacaagtgacaaccctagatcggtatgtaaaat 727
|||||||||||||||| |||||||| | ||||| ||||| |||| |||||||| ||||
Sbjct: 18 taggaaaagttgatgccaacaagctggtgcaagtaacaactatagaccggtatgtgaaat 77
Query: 728 accatgtcaaagaatttgagaagtgcttccagatgaaatttccagcttgcaccattgctg 787
| |||||||| || |||||||| || |||||||||| ||||||||||||| | |||||||
Sbjct: 78 atcatgtcaaggagtttgagaaatgtttccagatgagatttccagcttgctcaattgctg 137
Query: 788 ctaaaaagcacatagattcgtccactactattttggatgtgcaaggcgtgggtttcaaga 847
| ||| |||| | || || | |||||||||| ||||||||||||||||| |
Sbjct: 138 caaaacggcacctggactcatgcactactattctggatgtgcaaggcgtg---------a 188
Query: 848 acttctcgaaatctgccagagaattaatcacacgattacagaagatcgacagtgataact 907
||||| | |||| ||| || ||| ||||||| ||| | |||||||| |||||||||||||
Sbjct: 189 acttcgcaaaatgtgcaagggaactaatcacccgactgcagaagattgacagtgataact 248
Query: 908 acccagagacactgtgccggatgtatataattaatgctggccaaggcttcaagatgttat 967
||||||||||| | ||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 249 acccagagacattatgccggatgtacataattaacgctggtcaaggcttcaagatgttat 308
Query: 968 ggagcacaataaaatcattcctcgatccaaaaactgcttccaagatccatgttcttggga 1027
|| |||||||||| || || || ||||| ||||||||||| ||||||||||||||||| |
Sbjct: 309 ggggcacaataaagtcttttcttgatccgaaaactgcttcaaagatccatgttcttggaa 368
Query: 1028 ataagtatcaacataagttgctcgaaataattgacgagtgtgaactgccagaatttcttg 1087
||||||||| ||||| | || |||||||| || ||| ||||| ||||||||||| |||
Sbjct: 369 ccaagtatcaaaataagctccttgaaataatcgatgagagtgaattgccagaattttttg 428
Query: 1088 gtggcaaatgcaattgt------attgaaggttgccaaagatctgacaaaggtccttgga 1141
||||||||||||| ||| || |||||| || ||||| || |||||||||||||
Sbjct: 429 gtggcaaatgcaagtgtgaagaacatggaggttgtcagagatcagataaaggtccttgga 488
Query: 1142 aggatcccaacataataaagagagtcctcaatgacgaggcaaactacggcagacaaattg 1201
||||||||| || ||||||||| |||||||| | |||||||||||||| ||||||||| |
Sbjct: 489 aggatcccaccacaataaagagggtcctcaacggcgaggcaaactacgacagacaaatcg 548
Query: 1202 tgaccatatc 1211
||||||||||
Sbjct: 549 tgaccatatc 558
>gb|BI950960.1|BI950960 HVSMEl0023N03f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0023N03f, mRNA sequence
Length = 468
Score = 347 bits (175), Expect = 1e-093
Identities = 387/458 (84%), Gaps = 6/458 (1%)
Strand = Plus / Plus
Query: 710 tagatcggtatgtaaaataccatgtcaaagaatttgagaagtgcttccagatgaaatttc 769
|||| |||||||| ||||| |||||||| || |||||||| || |||||||||| |||||
Sbjct: 11 tagaccggtatgtgaaatatcatgtcaaggagtttgagaaatgtttccagatgagatttc 70
Query: 770 cagcttgcaccattgctgctaaaaagcacatagattcgtccactactattttggatgtgc 829
|||||||| | |||||||| ||| |||| | || || | |||||||||| |||||||||
Sbjct: 71 cagcttgctcaattgctgcaaaacggcacctggactcatgcactactattctggatgtgc 130
Query: 830 aaggcgtgggtttcaagaacttctcgaaatctgccagagaattaatcacacgattacaga 889
|||||||||| || ||||||||| | |||| ||| || ||| ||||||| ||| | ||||
Sbjct: 131 aaggcgtgggattgaagaacttcgcaaaatgtgcaagggaactaatcacccgactgcaga 190
Query: 890 agatcgacagtgataactacccagagacactgtgccggatgtatataattaatgctggcc 949
|||| |||||||||||||||||||||||| | ||||||||||| |||||||| ||||| |
Sbjct: 191 agattgacagtgataactacccagagacattatgccggatgtacataattaacgctggtc 250
Query: 950 aaggcttcaagatgttatggagcacaataaaatcattcctcgatccaaaaactgcttcca 1009
|||||||||||||||||||| |||||||||| || || || ||||| ||||||||||| |
Sbjct: 251 aaggcttcaagatgttatggggcacaataaagtcttttcttgatccgaaaactgcttcaa 310
Query: 1010 agatccatgttcttgggaataagtatcaacataagttgctcgaaataattgacgagtgtg 1069
|||||||||||||||| | ||||||||| ||||| | || |||||||| || ||| |||
Sbjct: 311 agatccatgttcttggaaccaagtatcaaaataagctccttgaaataatcgatgagagtg 370
Query: 1070 aactgccagaatttcttggtggcaaatgcaattgt------attgaaggttgccaaagat 1123
|| ||||||||||| |||||||||||||||| ||| || |||||| || ||||
Sbjct: 371 aattgccagaattttttggtggcaaatgcaagtgtgaagaacatggaggttgtcagagat 430
Query: 1124 ctgacaaaggtccttggaaggatcccaacataataaag 1161
| || |||||||||||||||||||||| || |||||||
Sbjct: 431 cagataaaggtccttggaaggatcccaccacaataaag 468
>gb|CA019569.1|CA019569 HV12G15r HV Hordeum vulgare subsp. vulgare cDNA clone HV12G15
5-PRIME, mRNA sequence
Length = 548
Score = 341 bits (172), Expect = 6e-092
Identities = 394/468 (84%)
Strand = Plus / Plus
Query: 558 cgacaaaatagaggaatttgactacaccgagttagatgaagtgacagagtattacccaca 617
|||||| |||||||||||||| ||| | |||||| | ||||| | ||||||| |||||
Sbjct: 81 cgacaatatagaggaatttgattactctgagttaaacgaagttatgcagtattatccaca 140
Query: 618 attttatcatggagtagataaagagggaagacctgtatacatagaattagtaggaaaagt 677
||||| ||||| || |||||||| || |||||||| || | || || ||||||||||
Sbjct: 141 gttttaccatggggtggataaagatggtagacctgtctatgtggagctaataggaaaagt 200
Query: 678 tgatgcaaacaagctaatacaagtgacaaccctagatcggtatgtaaaataccatgtcaa 737
|||||| |||||||| | ||||| ||||| |||| |||||||| ||||| ||||||||
Sbjct: 201 tgatgccaacaagctggtgcaagtaacaactatagaccggtatgtgaaatatcatgtcaa 260
Query: 738 agaatttgagaagtgcttccagatgaaatttccagcttgcaccattgctgctaaaaagca 797
|| |||||||| || |||||||||| ||||||||||||| | |||||||| ||| |||
Sbjct: 261 ggagtttgagaaatgtttccagatgagatttccagcttgctcaattgctgcaaaacggca 320
Query: 798 catagattcgtccactactattttggatgtgcaaggcgtgggtttcaagaacttctcgaa 857
| | || || | |||||||||| ||||||||||||||||||| || ||||||||| | ||
Sbjct: 321 cctggactcatgcactactattctggatgtgcaaggcgtgggattgaagaacttcgcaaa 380
Query: 858 atctgccagagaattaatcacacgattacagaagatcgacagtgataactacccagagac 917
|| ||| || ||| ||||||| ||| | |||||||| |||||||||||||||||||||||
Sbjct: 381 atgtgcaagggaactaatcacccgactgcagaagattgacagtgataactacccagagac 440
Query: 918 actgtgccggatgtatataattaatgctggccaaggcttcaagatgttatggagcacaat 977
| | ||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct: 441 attatgccggatgtacataattaacgctggtcaaggcttcaagatgttatggggcacaat 500
Query: 978 aaaatcattcctcgatccaaaaactgcttccaagatccatgttcttgg 1025
||| || || || ||||| ||||||||||| |||||||||||||||||
Sbjct: 501 aaagtcttttcttgatccgaaaactgcttcaaagatccatgttcttgg 548
>gb|BE558814.2|BE558814 HV_CEb0020H08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020H08f, mRNA sequence
Length = 829
Score = 272 bits (137), Expect = 5e-071
Identities = 328/392 (83%), Gaps = 6/392 (1%)
Strand = Plus / Plus
Query: 997 aaaactgcttccaagatccatgttcttgggaataagtatcaacataagttgctcgaaata 1056
||||||||||| ||||||||||||||||| | ||||||||| ||||| | || ||||||
Sbjct: 26 aaaactgcttcaaagatccatgttcttggaaccaagtatcaaaataagctccttgaaata 85
Query: 1057 attgacgagtgtgaactgccagaatttcttggtggcaaatgcaattgtattgaa------ 1110
|| || ||| ||||| ||||||||||| |||||||||||||||| ||| |||
Sbjct: 86 atcgatgagagtgaattgccagaattttttggtggcaaatgcaagtgtgaagaacatgga 145
Query: 1111 ggttgccaaagatctgacaaaggtccttggaaggatcccaacataataaagagagtcctc 1170
||||| || ||||| || |||||||||||||||||||||| || ||||||||| |||||
Sbjct: 146 ggttgtcagagatcagataaaggtccttggaaggatcccaccacaataaagagggtcctt 205
Query: 1171 aatgacgaggcaaactacggcagacaaattgtgaccatatccagcattgatggaaaaata 1230
|| | |||||||||||||| ||||||||| ||||||||||| ||| ||||| || |||
Sbjct: 206 aacggcgaggcaaactacgacagacaaatcgtgaccatatcaggcaccgatggcaagata 265
Query: 1231 atacgttatgctaggccagatcacccaactagaaaagggagtgatgcatctgccgagtct 1290
|| |||||||||||||| | | ||||| | ||||||| |||||||||||||| ||||||
Sbjct: 266 atcggttatgctaggccacagcgcccaaatggaaaaggcagtgatgcatctgctgagtct 325
Query: 1291 ggatctgaagtggaagatgtaacatctcctactgcatcaaggaacctgattacacatcct 1350
|| |||||||||||||||| ||||||||||||||| |||||| ||| || || | |||
Sbjct: 326 gggtctgaagtggaagatgctacatctcctactgcaccaaggaccctcataacgaaccct 385
Query: 1351 attttgacccctgttcacgaagagtcaaaatt 1382
||||||||||||||| || |||||||||||
Sbjct: 386 tctttgacccctgttcatgaggagtcaaaatt 417
Score = 40.1 bits (20), Expect = 0.33
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 1420 attgaagaaaacattcctgttgtagacaaggttgtggatgatggatgg 1467
|||||||| | ||| ||||| || |||||||||||||| || ||||||
Sbjct: 454 attgaagagagcatccctgtcgttgacaaggttgtggacgacggatgg 501
>gb|BF260808.2|BF260808 HVSMEf0022P24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0022P24f, mRNA sequence
Length = 728
Score = 238 bits (120), Expect = 7e-061
Identities = 299/359 (83%), Gaps = 6/359 (1%)
Strand = Plus / Plus
Query: 1030 aagtatcaacataagttgctcgaaataattgacgagtgtgaactgccagaatttcttggt 1089
||||||||| ||||| | || |||||||| || ||| ||||| ||||||||||| |||||
Sbjct: 10 aagtatcaaaataagctccttgaaataatcgatgagagtgaattgccagaattttttggt 69
Query: 1090 ggcaaatgcaattgtattgaa------ggttgccaaagatctgacaaaggtccttggaag 1143
||||||||||| ||| ||| ||||| || ||||| || |||||||||||||||
Sbjct: 70 ggcaaatgcaagtgtgaagaacatggaggttgtcagagatcagataaaggtccttggaag 129
Query: 1144 gatcccaacataataaagagagtcctcaatgacgaggcaaactacggcagacaaattgtg 1203
||||||| || ||||||||| ||||| || | |||||||||||||| ||||||||| |||
Sbjct: 130 gatcccaccacaataaagagggtccttaacggcgaggcaaactacgacagacaaatcgtg 189
Query: 1204 accatatccagcattgatggaaaaataatacgttatgctaggccagatcacccaactaga 1263
|||||||| ||| ||||| || ||||| |||||||||||||| | | ||||| | ||
Sbjct: 190 accatatcaggcaccgatggcaagataatcggttatgctaggccacagcgcccaaatgga 249
Query: 1264 aaagggagtgatgcatctgccgagtctggatctgaagtggaagatgtaacatctcctact 1323
||||| |||||||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct: 250 aaaggcagtgatgcatctgctgagtctgggtctgaagtggaagatgctacatctcctact 309
Query: 1324 gcatcaaggaacctgattacacatcctattttgacccctgttcacgaagagtcaaaatt 1382
||| |||||| ||| || || | ||| ||||||||||||||| || |||||||||||
Sbjct: 310 gcaccaaggaccctcataacgaacccttctttgacccctgttcatgaggagtcaaaatt 368
>gb|BM817362.1|BM817362 HC111C03_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111C03_T3.ab1 similar to (AC006841) putative
phosphatidylinositol/phosphatidylcholine transfer protein
[Arabidopsis thaliana], mRNA sequence
Length = 901
Score = 212 bits (107), Expect = 4e-053
Identities = 215/251 (85%)
Strand = Plus / Plus
Query: 1132 ggtccttggaaggatcccaacataataaagagagtcctcaatgacgaggcaaactacggc 1191
||||||||||||||||||| || ||||||||| |||||||| | |||||||||||||| |
Sbjct: 30 ggtccttggaaggatcccaccacaataaagagggtcctcaacggcgaggcaaactacgac 89
Query: 1192 agacaaattgtgaccatatccagcattgatggaaaaataatacgttatgctaggccagat 1251
|||||||| ||||||||||| ||| ||||| || ||||| |||||||||||||| |
Sbjct: 90 agacaaatcgtgaccatatcaggcaccgatggcaagataatcggttatgctaggccacag 149
Query: 1252 cacccaactagaaaagggagtgatgcatctgccgagtctggatctgaagtggaagatgta 1311
| ||||| | ||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct: 150 cgcccaaatggaaaaggcagtgatgcatctgctgagtctgggtctgaagtggaagatgct 209
Query: 1312 acatctcctactgcatcaaggaacctgattacacatcctattttgacccctgttcacgaa 1371
||||||||||||||| |||||| ||| || || | ||| ||||||||||||||| ||
Sbjct: 210 acatctcctactgcaccaaggaccctcataacgaacccttctttgacccctgttcatgag 269
Query: 1372 gagtcaaaatt 1382
|||||||||||
Sbjct: 270 gagtcaaaatt 280
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 1693 gagcacaaggaggagttccggcctccgtctcctgccccgtcctacacggagaa 1745
|||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 591 gagcacaaagaggaattccgacctccatctcctgccccgtcctacacggagaa 643
Score = 71.9 bits (36), Expect = 9e-011
Identities = 119/144 (82%), Gaps = 2/144 (1%)
Strand = Plus / Plus
Query: 1822 gagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcgctg 1881
|||||||| |||||||||||| |||||||||| || ||| ||||||||| || || ||
Sbjct: 718 gagatgccatttgagaaggag-agctgctcaatgcgtccgcccgccgcgtcgatgccttg 776
Query: 1882 gaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggatgag 1941
|||||| ||||| || || |||||| |||| ||||| || || ||||| |||||||||
Sbjct: 777 gaagcccgactgatttctacaaagaag-ccctctacgaggcgctaatgcgtcaggatgag 835
Query: 1942 ctgctcgcgtacattgacaggcag 1965
|||||||||| ||| |||| ||||
Sbjct: 836 ctgctcgcgttcatcgacaagcag 859
>gb|BQ464411.1|BQ464411 HF02D07r HF Hordeum vulgare subsp. vulgare cDNA clone HF02D07
5-PRIME, mRNA sequence
Length = 319
Score = 190 bits (96), Expect = 1e-046
Identities = 265/319 (83%), Gaps = 8/319 (2%)
Strand = Plus / Plus
Query: 1010 agatccatgttcttgggaataagtatcaaca-taagttgctcgaaataattgacgagtgt 1068
|||||| ||||||||| | ||||||||| | |||| | || |||||||| || ||| ||
Sbjct: 1 agatccctgttcttggaaccaagtatcaaaactaagctccttgaaataatcgatgagagt 60
Query: 1069 gaactgccagaatttctt-ggtggcaaatgcaattgtattgaa------ggttgccaaag 1121
||| ||||||||||| || |||||||||||||| ||| ||| ||||| || ||
Sbjct: 61 gaattgccagaatttttttggtggcaaatgcaagtgtgaagaacatggaggttgtcagag 120
Query: 1122 atctgacaaaggtccttggaaggatcccaacataataaagagagtcctcaatgacgaggc 1181
||| || |||||||||||||||||||||| || ||||||||| |||||||| | ||||||
Sbjct: 121 atcagataaaggtccttggaaggatcccaccacaataaagagggtcctcaacggcgaggc 180
Query: 1182 aaactacggcagacaaattgtgaccatatccagcattgatggaaaaataatacgttatgc 1241
|||||||| ||||||||| ||||||||||| ||| ||||| || ||||| |||||||
Sbjct: 181 aaactacgacagacaaatcgtgaccatatcaggcaccgatggcaagataatcggttatgc 240
Query: 1242 taggccagatcacccaactagaaaagggagtgatgcatctgccgagtctggatctgaagt 1301
||||||| | | ||||| | ||||||| |||||||||||||| |||||||| ||||||||
Sbjct: 241 taggccacagcgcccaaatggaaaaggcagtgatgcatctgctgagtctgggtctgaagt 300
Query: 1302 ggaagatgtaacatctcct 1320
|||||||| |||||||||
Sbjct: 301 ggaagatgctacatctcct 319
>gb|AV931636.1|AV931636 AV931636 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd23j11 3', mRNA sequence
Length = 616
Score = 178 bits (90), Expect = 6e-043
Identities = 255/310 (82%)
Strand = Plus / Minus
Query: 1693 gagcacaaggaggagttccggcctccgtctcctgccccgtcctacacggagaaggacgtg 1752
|||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| || |
Sbjct: 535 gagcacaaagaggaattccgacctccatctcctgccccgtcctacacggagaaagaaatt 476
Query: 1753 ctctcgtcgatgctgagacggctcggtgagctggagggcagggtgcaggtgctcgagacg 1812
|| || | || | |||||||| ||||||||||||| | |||||||| |||||| |
Sbjct: 475 ctttcaactctggtaagacggctaggtgagctggaggagaaggtgcaggcgctcgaagca 416
Query: 1813 aagccgtccgagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtg 1872
||||| || |||||||| ||||||||||||||||||||||| || ||| |||||||||
Sbjct: 415 aagccatctgagatgccatttgagaaggaggagctgctcaatgcgtccgcccgccgcgtc 356
Query: 1873 gacgcgctggaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcga 1932
|| || |||||||||| |||| || || ||||||||||| ||||| || || |||||
Sbjct: 355 gatgccttggaagccgacttgatttctacaaagaaggccctctacgaggcgctaatgcgt 296
Query: 1933 caggatgagctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaagaag 1992
||||||||||||||||||| ||| |||| ||| || || ||||||| || || |||||
Sbjct: 295 caggatgagctgctcgcgttcatcgacaagcaagacatgctcaagtttcgcaagaagaaa 236
Query: 1993 ttctgcttct 2002
||||||||||
Sbjct: 235 ttctgcttct 226
>gb|BF263284.2|BF263284 HV_CEa0006F12f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006F12f, mRNA sequence
Length = 913
Score = 167 bits (84), Expect = 2e-039
Identities = 162/188 (86%)
Strand = Plus / Plus
Query: 146 ggatgtcaggccctctcgaccgatttgctaggccatgctttgaagggtttgtacataacg 205
|||||||||| || ||||||||||| || ||||||| |||||||| ||| |||||| |
Sbjct: 1 ggatgtcagggcccctcgaccgattagccaggccatcttttgaaggatttacacataatg 60
Query: 206 atgaaaggaaagagagcagatctgatgcagacaactcagaaggagataagaagactaaga 265
||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 61 atggaaagaaagagagcagatcggatgcagacaactcagaaggagaaaagaagactaaaa 120
Query: 266 ttgggtctttcaagaaaaaagcaattaatgcggggaacaaattcaggcattccttgagaa 325
| | || ||||||||||| |||||||| || |||||||||||||| |||||| | || |
Sbjct: 121 tagcctccttcaagaaaaaggcaattaacgcagggaacaaattcagacattccctaagga 180
Query: 326 ggagaagc 333
||||||||
Sbjct: 181 ggagaagc 188
Score = 117 bits (59), Expect = 2e-024
Identities = 236/295 (80%)
Strand = Plus / Plus
Query: 397 gttgagacattccgacaatgcttaattgatgaggatttgctgccaccacagcacgatgat 456
|||||| |||| ||||| ||||| |||||||||| ||| |||||| ||| || ||||||
Sbjct: 252 gttgaggcatttcgacagtgcttgcttgatgaggacttgttgccacaacaacatgatgat 311
Query: 457 tatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaagctaagagt 516
|| ||||||||| | |||||||| || |||||||| ||||| |||||||| || ||| |
Sbjct: 312 taccacatgatgctgaggttcctgaaggcacggaagtttgatgttgagaaggcaaagctt 371
Query: 517 atgtggtcagacatgatcaattggaggaaggaattcggagtcgacaaaatagaggaattt 576
|||||||| || ||| | ||||| |||||||| || |||||| ||||||||||||
Sbjct: 372 atgtggtctgatatgcttgcatggagaaaggaatttgggaccgacaatatagaggaattt 431
Query: 577 gactacaccgagttagatgaagtgacagagtattacccacaattttatcatggagtagat 636
|| ||| | |||||| | ||||| | ||||||| ||||| ||||| ||||| || |||
Sbjct: 432 gattactctgagttaaacgaagttatgcagtattatccacagttttaccatggggtggat 491
Query: 637 aaagagggaagacctgtatacatagaattagtaggaaaagttgatgcaaacaagc 691
||||| || |||||||| || | || || ||||||||||||||| |||||||
Sbjct: 492 aaagatggtagacctgtctatgtggagctaataggaaaagttgatggcaacaagc 546
>gb|AV909169.1|AV909169 AV909169 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak11o01 5', mRNA sequence
Length = 627
Score = 153 bits (77), Expect = 3e-035
Identities = 196/236 (83%), Gaps = 6/236 (2%)
Strand = Plus / Plus
Query: 940 aatgctggccaaggcttcaagatgttatggagcacaataaaatcattcctcgatccaaaa 999
|||||||| || |||||||||||||||||| | ||||| |||||||| || |||||| ||
Sbjct: 60 aatgctgggcagggcttcaagatgttatggggtacaattaaatcatttcttgatccacaa 119
Query: 1000 actgcttccaagatccatgttcttgggaataagtatcaacataagttgctcgaaataatt 1059
|||||||| ||||| ||||||||||| | ||||| ||| ||||| |||| |||||||||
Sbjct: 120 actgcttcgaagattcatgttcttggaagcaagtaccaaaataagctgcttgaaataatt 179
Query: 1060 gacgagtgtgaactgccagaatttcttggtggcaaatgcaattgt------attgaaggt 1113
|| || ||||||||||||| |||||||| |||||||||| ||| | || ||||
Sbjct: 180 gatgaaagtgaactgccagattttcttggaggcaaatgcaggtgtgaagagagtggaggt 239
Query: 1114 tgccaaagatctgacaaaggtccttggaaggatcccaacataataaagagagtcct 1169
||| || ||| ||||||||||||||||| ||||| ||||||||| |||| |||||
Sbjct: 240 tgctcaaaatcagacaaaggtccttggaatgatcctaacataatagagagggtcct 295
>gb|BM375072.2|BM375072 EBem06_SQ002_E07_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_E07 5', mRNA sequence
Length = 489
Score = 149 bits (75), Expect = 5e-034
Identities = 195/235 (82%)
Strand = Plus / Plus
Query: 1768 agacggctcggtgagctggagggcagggtgcaggtgctcgagacgaagccgtccgagatg 1827
|||||||| ||||||||||||| | |||||||| |||||| | ||||| || ||||||
Sbjct: 18 agacggctaggtgagctggaggagaaggtgcaggcgctcgaagcaaagccatctgagatg 77
Query: 1828 ccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcgctggaagcc 1887
|| ||||||||||||||||||||||| || ||| ||||||||| || || ||||||||
Sbjct: 78 ccatttgagaaggaggagctgctcaatgcgtccgcccgccgcgtcgatgccttggaagcc 137
Query: 1888 gagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggatgagctgctc 1947
|| |||| || || ||||||||||| ||||| || || ||||| |||||||||||||||
Sbjct: 138 gacttgatttctacaaagaaggccctctacgaggcgctaatgcgtcaggatgagctgctc 197
Query: 1948 gcgtacattgacaggcaggagctgatcaagttccgtaaaaagaagttctgcttct 2002
|||| ||| |||| ||| || || ||||||| || || ||||| ||||||||||
Sbjct: 198 gcgttcatcgacaagcaagacatgctcaagtttcgcaagaagaaattctgcttct 252
>gb|BQ768564.1|BQ768564 EBro08_SQ012_F04_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F04 5', mRNA sequence
Length = 605
Score = 129 bits (65), Expect = 5e-028
Identities = 173/209 (82%)
Strand = Plus / Plus
Query: 1794 ggtgcaggtgctcgagacgaagccgtccgagatgccgtttgagaaggaggagctgctcaa 1853
|||||||| |||||| | ||||| || |||||||| |||||||||||||||||||||||
Sbjct: 12 ggtgcaggcgctcgaagcaaagccatctgagatgccatttgagaaggaggagctgctcaa 71
Query: 1854 cgcagccgtccgccgcgtggacgcgctggaagccgagctgatctccacgaagaaggccct 1913
|| ||| ||||||||| || || |||||||||| |||| || || |||||||||||
Sbjct: 72 tgcgtccgcccgccgcgtcgatgccttggaagccgacttgatttctacaaagaaggccct 131
Query: 1914 ttacgatgctctgatgcgacaggatgagctgctcgcgtacattgacaggcaggagctgat 1973
||||| || || ||||| ||||||||||||||||||| ||| |||| ||| || || |
Sbjct: 132 ctacgaggcgctaatgcgtcaggatgagctgctcgcgttcatcgacaagcaagacatgct 191
Query: 1974 caagttccgtaaaaagaagttctgcttct 2002
|||||| || || ||||| ||||||||||
Sbjct: 192 caagtttcgcaagaagaaattctgcttct 220
>gb|AL505480.1|AL505480 AL505480 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08J15V 5', mRNA sequence
Length = 163
Score = 115 bits (58), Expect = 7e-024
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 198 acataacgatgaaaggaaagagagcagatctgatgcagacaactcagaaggagataagaa 257
|||||| |||| || ||||||||||| ||| ||||||||||||||| || |||| |||||
Sbjct: 12 acataatgatggaaagaaagagagcacatcggatgcagacaactcanaangagaaaagaa 71
Query: 258 gactaagattgggtctttcaagaaaaaagcaattaatgcggggaacaaattcaggcattc 317
|||||| || | || ||||||||||| |||||||| || |||||||||||||| |||||
Sbjct: 72 gactaaaatagcctccttcaagaaaaaggcaattaacgcagggaacaaattcagacattc 131
Query: 318 cttgagaaggagaagc 333
| | || |||||||||
Sbjct: 132 cctaaggaggagaagc 147
>gb|AL506007.1|AL506007 AL506007 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01G15T 5',
mRNA sequence
Length = 700
Score = 101 bits (51), Expect = 1e-019
Identities = 165/203 (81%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaagct 510
||||||||| ||| ||||||||||||||| |||||| | || ||||| ||||||| ||
Sbjct: 482 gatgattattacacgatgttaaggttcctgaaagcaagaaagtttgatattgagaaggca 541
Query: 511 aagagtatgtggtcagacatgatcaattggaggaaggaattcggagtcgacaaaatagag 570
|| |||||||||||| ||| | | |||||||| || | || |||||||| ||||||
Sbjct: 542 aaacatatgtggtcagaaatgcttagatggaggaatgagtatggggtcgacaatatagag 601
Query: 571 gaatttgactacaccgagttagatgaagtgacagagtattacccacaattttatcatgga 630
||||| | |||||||| ||| ||||||| | || |||| ||||||||||| ||||||
Sbjct: 602 gaattcaattacaccgaattaaatgaagttaagaagcattatccacaattttaccatgga 661
Query: 631 gtagataaagagggaagacctgt 653
|| |||||||||||||| |||||
Sbjct: 662 gtggataaagagggaaggcctgt 684
Score = 46.1 bits (23), Expect = 0.005
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 268 gggtctttcaagaaaaaagcaattaatgcggggaacaaattcaggcattccttga 322
||||| |||||||||| ||| |||| ||| || || ||||| |||||||||||||
Sbjct: 299 gggtccttcaagaaaagagcgattagtgccggaaataaatttaggcattccttga 353
>gb|BJ462606.1|BJ462606 BJ462606 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29g16 5', mRNA sequence
Length = 661
Score = 85.7 bits (43), Expect = 6e-015
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 960 gatgttatggagcacaataaaatcattcctcgatccaaaaactgcttccaagatccatgt 1019
|||| |||||||||| | ||||| |||||||| |||||||| |||||||||| |||||
Sbjct: 304 gatgctatggagcactgtgaaatctttcctcgacccaaaaaccacttccaagatacatgt 363
Query: 1020 tcttgggaataagtatcaacataagttgctcgaaataattgacgagtgtgaactgccaga 1079
|||||||| |||| ||| ||| |||| ||||||||||| | ||||| |||||||
Sbjct: 364 acttgggaacaagtgtcagagtaaactgcttgaaataattgatgctagtgaattgccaga 423
Query: 1080 atttcttggtggcaa 1094
|||||||||||||||
Sbjct: 424 atttcttggtggcaa 438
Score = 42.1 bits (21), Expect = 0.082
Identities = 99/125 (79%)
Strand = Plus / Plus
Query: 718 tatgtaaaataccatgtcaaagaatttgagaagtgcttccagatgaaatttccagcttgc 777
||||||| |||||||| || ||||| |||| | ||||| ||| ||||||||||| |||
Sbjct: 62 tatgtaaggtaccatgtgaaggaattcgagaggagcttcttgatcaaatttccagcatgc 121
Query: 778 accattgctgctaaaaagcacatagattcgtccactactattttggatgtgcaaggcgtg 837
| |||| ||||||| ||||| ||||| ||| |||||| ||||||| || || |||
Sbjct: 122 tctcttgcggctaaaagacacatcaattcgagcacaactattctggatgttcagggtgtg 181
Query: 838 ggttt 842
|||||
Sbjct: 182 ggttt 186
>gb|BQ459933.1|BQ459933 HA07K21r HA Hordeum vulgare subsp. vulgare cDNA clone HA07K21
5-PRIME, mRNA sequence
Length = 569
Score = 85.7 bits (43), Expect = 6e-015
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 960 gatgttatggagcacaataaaatcattcctcgatccaaaaactgcttccaagatccatgt 1019
|||| |||||||||| | ||||| |||||||| |||||||| |||||||||| |||||
Sbjct: 17 gatgctatggagcactgtgaaatctttcctcgacccaaaaaccacttccaagatacatgt 76
Query: 1020 tcttgggaataagtatcaacataagttgctcgaaataattgacgagtgtgaactgccaga 1079
|||||||| |||| ||| ||| |||| ||||||||||| | ||||| |||||||
Sbjct: 77 acttgggaacaagtgtcagagtaaactgcttgaaataattgatgctagtgaattgccaga 136
Query: 1080 atttcttggtggcaa 1094
|||||||||||||||
Sbjct: 137 atttcttggtggcaa 151
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 346 ctgcggagtctggatctgaagctgaagatgtaac 379
>gb|BU987679.1|BU987679 HF15H06r HF Hordeum vulgare subsp. vulgare cDNA clone HF15H06
5-PRIME, mRNA sequence
Length = 650
Score = 85.7 bits (43), Expect = 6e-015
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 960 gatgttatggagcacaataaaatcattcctcgatccaaaaactgcttccaagatccatgt 1019
|||| |||||||||| | ||||| |||||||| |||||||| |||||||||| |||||
Sbjct: 299 gatgctatggagcactgtgaaatctttcctcgacccaaaaaccacttccaagatacatgt 358
Query: 1020 tcttgggaataagtatcaacataagttgctcgaaataattgacgagtgtgaactgccaga 1079
|||||||| |||| ||| ||| |||| ||||||||||| | ||||| |||||||
Sbjct: 359 acttgggaacaagtgtcagagtaaactgcttgaaataattgatgctagtgaattgccaga 418
Query: 1080 atttcttggtggcaa 1094
|||||||||||||||
Sbjct: 419 atttcttggtggcaa 433
Score = 42.1 bits (21), Expect = 0.082
Identities = 99/125 (79%)
Strand = Plus / Plus
Query: 718 tatgtaaaataccatgtcaaagaatttgagaagtgcttccagatgaaatttccagcttgc 777
||||||| |||||||| || ||||| |||| | ||||| ||| ||||||||||| |||
Sbjct: 57 tatgtaaggtaccatgtgaaggaattcgagaggagcttcttgatcaaatttccagcatgc 116
Query: 778 accattgctgctaaaaagcacatagattcgtccactactattttggatgtgcaaggcgtg 837
| |||| ||||||| ||||| ||||| ||| |||||| ||||||| || || |||
Sbjct: 117 tctcttgcggctaaaagacacatcaattcgagcacaactattctggatgttcagggtgtg 176
Query: 838 ggttt 842
|||||
Sbjct: 177 ggttt 181
>gb|AV931635.1|AV931635 AV931635 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd23j10 3', mRNA sequence
Length = 336
Score = 77.8 bits (39), Expect = 1e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 1880 tggaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggatg 1939
|||||||||| |||| || || ||||||||||| ||||| || || ||||| |||||||
Sbjct: 330 tggaagccgacttgatttctacaaagaaggccctctacgaggcgctaatgcgtcaggatg 271
Query: 1940 agctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaagaagttctgct 1999
|||||||||||| ||| |||| ||| || || ||||||| || || ||||| |||||||
Sbjct: 270 agctgctcgcgttcatcgacaagcaagacatgctcaagtttcgcaagaagaaattctgct 211
Query: 2000 tct 2002
|||
Sbjct: 210 tct 208
>gb|CA015716.1|CA015716 HV12G15u HV Hordeum vulgare subsp. vulgare cDNA clone HV12G15
3-PRIME, mRNA sequence
Length = 466
Score = 71.9 bits (36), Expect = 9e-011
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 1903 aagaaggccctttacgatgctctgatgcgacaggatgagctgctcgcgtacattgacagg 1962
||||||||||| ||||| || || ||||| ||||||||||||||||||| ||| |||| |
Sbjct: 465 aagaaggccctctacgaggcgctaatgcgtcaggatgagctgctcgcgttcatcgacaag 406
Query: 1963 caggagctgatcaagttccgtaaaaagaagttctgcttct 2002
|| || || ||||||| || || ||||| ||||||||||
Sbjct: 405 caagacatgctcaagtttcgcaagaagaaattctgcttct 366
>gb|BI949968.1|BI949968 HVSMEl0017F18f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0017F18f, mRNA sequence
Length = 479
Score = 69.9 bits (35), Expect = 4e-010
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 960 gatgttatggagcacaataaaatcattcctcgatccaaaaactgcttccaagatccatgt 1019
|||| |||||||||| | ||||| |||||||| |||||||| |||||||||| |||||
Sbjct: 9 gatgctatggagcactgtgaaatctttcctcgacccaaaaaccacttccaagatacatgt 68
Query: 1020 tcttgggaataagtatcaacataagttgctcgaaataattgacgagtgtgaactgccaga 1079
|||||||| |||| ||| ||| |||| ||||||||||| | |||| |||||||
Sbjct: 69 acttgggaacaagtgtcagagtaaactgcttgaaataattgatgctaatgaattgccaga 128
Query: 1080 atttcttggtggcaa 1094
|||| ||||||||||
Sbjct: 129 attttttggtggcaa 143
>gb|BJ462700.1|BJ462700 BJ462700 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29p13 5', mRNA sequence
Length = 592
Score = 65.9 bits (33), Expect = 6e-009
Identities = 97/117 (82%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 979 aaatcattcctcgatccaaaaactgcttccaag-atccatgttcttgggaataagtatca 1037
||||| |||||||| |||||||| |||||||| || ||||| |||||||| |||| |||
Sbjct: 4 aaatctttcctcgacccaaaaaccacttccaagnatacatgtacttgggaacaagtgtca 63
Query: 1038 acataagttgctcgaaataattgacgagtgtgaactgccagaatttcttggtggcaa 1094
||| |||| ||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 64 gagtaaactgcttgaaataattgatgctagtgaattgccagaatttcttggtggcaa 120
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 315 ctgcggagtctggatctgaagctgaagatgtaac 348
>gb|AL502745.1|AL502745 AL502745 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08J15u 3', mRNA sequence
Length = 642
Score = 60.0 bits (30), Expect = 4e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 1903 aagaaggccctttacgatgctctgatgcgacaggatgagctgctcgcgtacattgaca 1960
||||||||||| ||||| || || ||||| ||||||||||||||||||| ||| ||||
Sbjct: 507 aagaaggccctctacgaggcgctaatgcgtcaggatgagctgctcgcgttcatcgaca 450
>gb|BF616784.2|BF616784 HVSMEc0012L03f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012L03f, mRNA sequence
Length = 568
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaagct 510
||||||||| ||||||||||||||||||| |||||| | || ||||| ||||||| ||
Sbjct: 420 gatgattattacatgatgttaaggttcctgaaagcaagaaagtttgatattgagaaggca 479
Query: 511 aagagtatgtggtcaga 527
|| ||||||||||||
Sbjct: 480 aaacatatgtggtcaga 496
Score = 46.1 bits (23), Expect = 0.005
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 268 gggtctttcaagaaaaaagcaattaatgcggggaacaaattcaggcattccttga 322
||||| |||||||||| ||| |||| ||| || || ||||| |||||||||||||
Sbjct: 237 gggtccttcaagaaaagagcgattagtgccggaaataaatttaggcattccttga 291
>gb|AL509318.1|AL509318 AL509318 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01G15u 3',
mRNA sequence
Length = 681
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1974 caagttccgtaaaaagaagttctgcttctaagatctg 2010
||||||||| ||||||| |||||||||||||| ||||
Sbjct: 292 caagttccggaaaaagaggttctgcttctaagctctg 256
>gb|AV833071.1|AV833071 AV833071 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp. vulgare
cDNA clone bags11b10, mRNA sequence
Length = 540
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1046 tgctcgaaataattgacgagtgtgaactgccagaatttcttggtggcaa 1094
|||| ||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 23 tgcttgaaataattgatgctagtgaattgccagaatttcttggtggcaa 71
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 266 ctgcggagtctggatctgaagctgaagatgtaac 299
>gb|BG414701.1|BG414701 HVSMEk0003G16f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0003G16f, mRNA sequence
Length = 873
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1046 tgctcgaaataattgacgagtgtgaactgccagaatttcttggtggcaa 1094
|||| ||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 13 tgcttgaaataattgatgctagtgaattgccagaatttcttggtggcaa 61
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 256 ctgcggagtctggatctgaagctgaagatgtaac 289
>gb|BJ449403.1|BJ449403 BJ449403 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak23n11 5', mRNA sequence
Length = 655
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1974 caagttccgtaaaaagaagttctgcttctaagatctg 2010
||||||||| ||||||| |||||||||||||| ||||
Sbjct: 347 caagttccggaaaaagaggttctgcttctaagctctg 383
>gb|BJ449404.1|BJ449404 BJ449404 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak23n12 5', mRNA sequence
Length = 525
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1974 caagttccgtaaaaagaagttctgcttctaagatctg 2010
||||||||| ||||||| |||||||||||||| ||||
Sbjct: 347 caagttccggaaaaagaggttctgcttctaagctctg 383
>gb|BJ452401.1|BJ452401 BJ452401 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak38o04 5', mRNA sequence
Length = 709
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1046 tgctcgaaataattgacgagtgtgaactgccagaatttcttggtggcaa 1094
|||| ||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 6 tgcttgaaataattgatgctagtgaattgccagaatttcttggtggcaa 54
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 249 ctgcggagtctggatctgaagctgaagatgtaac 282
>gb|BJ456861.1|BJ456861 BJ456861 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak23n11 3', mRNA sequence
Length = 633
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1974 caagttccgtaaaaagaagttctgcttctaagatctg 2010
||||||||| ||||||| |||||||||||||| ||||
Sbjct: 287 caagttccggaaaaagaggttctgcttctaagctctg 251
>gb|BJ456862.1|BJ456862 BJ456862 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak23n12 3', mRNA sequence
Length = 563
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1974 caagttccgtaaaaagaagttctgcttctaagatctg 2010
||||||||| ||||||| |||||||||||||| ||||
Sbjct: 285 caagttccggaaaaagaggttctgcttctaagctctg 249
>gb|BJ448210.1|BJ448210 BJ448210 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak19a19 5', mRNA sequence
Length = 574
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1051 gaaataattgacgagtgtgaactgccagaatttcttggtggcaa 1094
||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 16 gaaataattgatgctagtgaattgccagaatttcttggtggcaa 59
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 254 ctgcggagtctggatctgaagctgaagatgtaac 287
>gb|BJ450755.1|BJ450755 BJ450755 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak31a06 5', mRNA sequence
Length = 639
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1067 gtgaactgccagaatttcttggtggcaa 1094
||||| ||||||||||||||||||||||
Sbjct: 4 gtgaattgccagaatttcttggtggcaa 31
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 226 ctgcggagtctggatctgaagctgaagatgtaac 259
>gb|BQ762906.1|BQ762906 EBro02_SQ006_B14 _R root, 3 week, hydroponic grown, low nitrogen,
cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA
clone EBro02_SQ006_B14 5', mRNA sequence
Length = 503
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 886 cagaagatcgacagtgataactacccagagacactgtgccggatgtatataattaatgct 945
|||||||| || ||||||||||||| |||| ||||||||||||| || || |||||
Sbjct: 171 cagaagattgatggtgataactacccttagacgctgtgccggatgttcatcatcaatgcg 230
Query: 946 ggccaagg 953
||||||||
Sbjct: 231 ggccaagg 238
>gb|BI956670.1|BI956670 HVSMEn0004K24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004K24f, mRNA sequence
Length = 914
Score = 46.1 bits (23), Expect = 0.005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagc 485
||||| ||| ||||||||||||||||||| |||||
Sbjct: 414 gatgagtattacatgatgttaaggttcctgaaagc 448
Score = 46.1 bits (23), Expect = 0.005
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 268 gggtctttcaagaaaaaagcaattaatgcggggaacaaattcaggcattccttga 322
||||| |||||||||| ||| |||| ||| || || ||||| |||||||||||||
Sbjct: 231 gggtccttcaagaaaagagcgattagtgccggaaataaatttaggcattccttga 285
>gb|BF259062.2|BF259062 HVSMEf0017J03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0017J03f, mRNA sequence
Length = 796
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 90 ctgcggagtctggatctgaagctgaagatgtaac 123
>gb|BG345066.1|BG345066 HVSMEg0018I11f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018I11f, mRNA sequence
Length = 609
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 109 ctgcggagtctggatctgaagctgaagatgtaac 142
>gb|BG415502.1|BG415502 HVSMEk0006L23f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0006L23f, mRNA sequence
Length = 669
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 206 ctgcggagtctggatctgaagctgaagatgtaac 239
>gb|BJ450068.1|BJ450068 BJ450068 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak27o20 5', mRNA sequence
Length = 566
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 152 ctgcggagtctggatctgaagctgaagatgtaac 185
>gb|BJ462701.1|BJ462701 BJ462701 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29p14 5', mRNA sequence
Length = 121
Score = 44.1 bits (22), Expect = 0.021
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 1046 tgctcgaaataattgacgagtgtgaactgccagaatttcttggtggcaa 1094
|||| ||||||||||| | ||||| |||||||||||||||||||||
Sbjct: 31 tgcttgaaataattgatgctagtgaatngccagaatttcttggtggcaa 79
>gb|BU972817.1|BU972817 HB22M24r BC Hordeum vulgare subsp. vulgare cDNA clone HB22M24
5-PRIME, mRNA sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 65 ctgcggagtctggatctgaagctgaagatgtaac 98
>gb|CA026538.1|CA026538 HZ56D06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56D06
5-PRIME, mRNA sequence
Length = 464
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 126 ctgcggagtctggatctgaagctgaagatgtaac 159
>gb|CA026848.1|CA026848 HZ57C10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57C10
5-PRIME, mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.021
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgtaac 1313
|||| |||||||||||||||| |||||||||||
Sbjct: 126 ctgcggagtctggatctgaagctgaagatgtaac 159
>gb|AL500976.1|AL500976 AL500976 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J18u 3', mRNA sequence
Length = 508
Score = 42.1 bits (21), Expect = 0.082
Identities = 64/77 (83%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 1927 atgcgacaggatgagc-tgctcgcgtacattgacaggcaggagctgatcaagttccgtaa 1985
||||| |||||||||| ||||||||| ||| |||| ||| || || ||||||| || ||
Sbjct: 485 atgcgtcaggatgagcttgctcgcgttcatcgacaagcaagacatgctcaagtttcgcaa 426
Query: 1986 aaagaagttctgcttct 2002
||||| ||||||||||
Sbjct: 425 gaagaaattctgcttct 409
>gb|AV914773.1|AV914773 AV914773 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8a13 5', mRNA sequence
Length = 467
Score = 42.1 bits (21), Expect = 0.082
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 985 ttcctcgatccaaaaactgcttccaagatccatgttcttgg 1025
||||| || ||||||||| | |||||||| |||||||||||
Sbjct: 239 ttccttgacccaaaaacttcatccaagattcatgttcttgg 279
>gb|AV915859.1|AV915859 AV915859 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16f02 5', mRNA sequence
Length = 563
Score = 42.1 bits (21), Expect = 0.082
Identities = 99/125 (79%)
Strand = Plus / Plus
Query: 718 tatgtaaaataccatgtcaaagaatttgagaagtgcttccagatgaaatttccagcttgc 777
||||||| |||||||| || ||||| |||| | ||||| ||| ||||||||||| |||
Sbjct: 289 tatgtaaggtaccatgtgaaggaattcgagaggagcttcttgatcaaatttccagcatgc 348
Query: 778 accattgctgctaaaaagcacatagattcgtccactactattttggatgtgcaaggcgtg 837
| |||| ||||||| ||||| ||||| ||| |||||| ||||||| || || |||
Sbjct: 349 tctcttgcggctaaaagacacatcaattcgagcacaactattctggatgttcagggtgtg 408
Query: 838 ggttt 842
|||||
Sbjct: 409 ggttt 413
>gb|AV916735.1|AV916735 AV916735 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19h09 5', mRNA sequence
Length = 609
Score = 42.1 bits (21), Expect = 0.082
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 985 ttcctcgatccaaaaactgcttccaagatccatgttcttgg 1025
||||| || ||||||||| | |||||||| |||||||||||
Sbjct: 254 ttccttgacccaaaaacttcatccaagattcatgttcttgg 294
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 234,084
Number of Sequences: 312970
Number of extensions: 234084
Number of successful extensions: 70826
Number of sequences better than 0.5: 59
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 70654
Number of HSP's gapped (non-prelim): 162
length of query: 2357
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2337
effective length of database: 168,875,139
effective search space: 394661199843
effective search space used: 394661199843
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)