BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= M73028.2.3
(1601 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedl... 335 3e-090
gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedl... 135 5e-030
gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedl... 135 5e-030
gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedl... 101 7e-020
gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachi... 101 7e-020
gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedl... 96 4e-018
gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedl... 94 2e-017
gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachi... 94 2e-017
gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedl... 94 2e-017
gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedl... 94 2e-017
gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-a... 94 2e-017
gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, sal... 94 2e-017
gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, sal... 94 2e-017
gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, sal... 94 2e-017
gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, wat... 94 2e-017
gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. v... 94 2e-017
emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcriptio... 94 2e-017
gb|BF619532.3|BF619532 HVSMEc0003P10f Hordeum vulgare seedl... 88 1e-015
gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachi... 84 2e-014
gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare s... 84 2e-014
gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hyd... 84 2e-014
emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA 84 2e-014
emb|X70879.1|HVMYB1G H.vulgare Myb1 gene 84 2e-014
gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. v... 82 6e-014
gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgar... 82 6e-014
gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. v... 80 3e-013
gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike... 76 4e-012
gb|AV914947.1|AV914947 AV914947 K. Sato unpublished cDNA li... 76 4e-012
gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. v... 76 4e-012
gb|CA027463.1|CA027463 HZ59A03r HZ Hordeum vulgare subsp. v... 76 4e-012
gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedl... 74 2e-011
gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. v... 74 2e-011
gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcrip... 74 2e-011
emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA 74 2e-011
gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedl... 72 6e-011
gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. v... 72 6e-011
emb|X70880.1|HVMYB2G H.vulgare Myb2 gene 72 6e-011
gb|BF259477.2|BF259477 HVSMEf0019D12f Hordeum vulgare seedl... 68 1e-009
gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachi... 68 1e-009
gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedl... 68 1e-009
gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, sal... 68 1e-009
gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. v... 68 1e-009
gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm libra... 68 1e-009
gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm librar... 68 1e-009
gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm libra... 68 1e-009
gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm librar... 68 1e-009
gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm libra... 68 1e-009
gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm librar... 68 1e-009
gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm librar... 68 1e-009
emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA 68 1e-009
emb|X70881.1|HVMYB3G H.vulgare myb3 gene 68 1e-009
gb|BQ764651.1|BQ764651 EBca01_SQ004_C14_R carpel, pre-anthe... 66 4e-009
gb|AV920069.1|AV920069 AV920069 K. Sato unpublished cDNA li... 64 2e-008
gb|AV932650.1|AV932650 AV932650 K. Sato unpublished cDNA li... 64 2e-008
gb|AV933832.1|AV933832 AV933832 K. Sato unpublished cDNA li... 64 2e-008
gb|BQ765682.1|BQ765682 EBro03_SQ007_I24_R root, 3 week, wat... 64 2e-008
gb|CV063055.1|CV063055 BNEL86b3 Barley EST endosperm librar... 64 2e-008
gb|BF254573.2|BF254573 HVSMEf0004G11f Hordeum vulgare seedl... 62 6e-008
gb|CK123590.1|CK123590 BES1824104i24 BES1824 Hordeum vulgar... 62 6e-008
gb|BQ466900.1|BQ466900 HS01O24T HS Hordeum vulgare subsp. v... 60 2e-007
gb|BF064941.1|BF064941 HV_CEb0022A15f Hordeum vulgare seedl... 58 9e-007
gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachi... 58 9e-007
gb|BI960298.1|BI960298 HVSMEn0024C09f Hordeum vulgare rachi... 58 9e-007
gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedl... 58 9e-007
gb|CV053597.1|CV053597 BNEL101a5 Barley EST endosperm libra... 58 9e-007
gb|BI954784.1|BI954784 HVSMEm0019M04f Hordeum vulgare green... 56 4e-006
gb|BQ471469.1|BQ471469 HV02I08r HV Hordeum vulgare subsp. v... 56 4e-006
gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. v... 56 4e-006
gb|CA003603.1|CA003603 HS14P22r HS Hordeum vulgare subsp. v... 56 4e-006
gb|CA013607.1|CA013607 HT08P20r HT Hordeum vulgare subsp. v... 56 4e-006
gb|CA014662.1|CA014662 HT11P22r HT Hordeum vulgare subsp. v... 56 4e-006
gb|CA019900.1|CA019900 HV13K14r HV Hordeum vulgare subsp. v... 56 4e-006
gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. v... 56 4e-006
gb|AY008692.1| Hordeum vulgare transcription factor GAMyb (... 56 4e-006
emb|X87690.1|HVRNAGAM1 H.vulgare mRNA for GAMyb protein 56 4e-006
gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke devel... 54 1e-005
gb|AL507948.1|AL507948 AL507948 Hordeum vulgare Barke devel... 54 1e-005
gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow st... 54 1e-005
gb|CB877704.1|CB877704 HP05O05T HP Hordeum vulgare subsp. v... 54 1e-005
gb|BF629773.1|BF629773 HVSMEb0013M11f Hordeum vulgare seedl... 52 6e-005
gb|BF626054.2|BF626054 HVSMEa0015H17f Hordeum vulgare seedl... 50 2e-004
gb|BG369720.1|BG369720 HVSMEi0025K10f Hordeum vulgare 20 DA... 50 2e-004
gb|BG416961.1|BG416961 HVSMEk0015G09f Hordeum vulgare testa... 50 2e-004
gb|BI779364.2|BI779364 EBro01_SQ003_M18_R root, 3 week, hyd... 50 2e-004
gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm libra... 50 2e-004
gb|BI957930.1|BI957930 HVSMEn0012D18f Hordeum vulgare rachi... 48 0.001
gb|BJ471839.1|BJ471839 BJ471839 K. Sato unpublished cDNA li... 48 0.001
gb|BJ472224.1|BJ472224 BJ472224 K. Sato unpublished cDNA li... 48 0.001
gb|BQ767987.1|BQ767987 EBro08_SQ010_K07_R root, 3 week, dro... 48 0.001
gb|BI956816.1|BI956816 HVSMEn0005H11f Hordeum vulgare rachi... 44 0.014
gb|BM443593.2|BM443593 EBro02_SQ005_M21_R root, 3 week, hyd... 44 0.014
gb|BG344708.2|BG344708 HVSMEg0015E16f Hordeum vulgare pre-a... 42 0.056
gb|BG369102.2|BG369102 HVSMEi0021L15f Hordeum vulgare 20 DA... 42 0.056
gb|BQ460434.1|BQ460434 HA09K10r HA Hordeum vulgare subsp. v... 42 0.056
gb|BM371860.2|BM371860 EBma08_SQ004_D12_R maternal, 28 DPA,... 42 0.056
gb|BU975173.1|BU975173 HB30F02r BC Hordeum vulgare subsp. v... 42 0.056
gb|BU975705.1|BU975705 HB32A20r BC Hordeum vulgare subsp. v... 42 0.056
gb|BF627413.1|BF627413 HVSMEb0004M17f Hordeum vulgare seedl... 40 0.22
gb|CB876695.1|CB876695 HP02B11T HP Hordeum vulgare subsp. v... 40 0.22
>gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E02f, mRNA sequence
Length = 796
Score = 335 bits (169), Expect = 3e-090
Identities = 322/373 (86%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggggctcaagcgagggaggtggacggcgga 378
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 210 gatggggagggcgccgtgctgcgagaaggtggggctgaagcggggaaggtggacggcgga 269
Query: 379 agaggaccagttacttgccaactacattgcggagcacggcgaggggtcctggaggtcgct 438
|||||| | |||| || ||||||||||| ||||||||||||| || |||||||| ||
Sbjct: 270 ggaggacgacatactcgcaaactacattgcccagcacggcgagggctcatggaggtctct 329
Query: 439 gcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatcaacta 498
|||||||||||||| || || |||| |||||||||||| |||| ||||||||||||||
Sbjct: 330 acccaagaatgcagggctactgaggtgtggcaagagctgcaggctgcggtggatcaacta 389
Query: 499 ccttcgggcggacgtcaagagggggaacatctccaaggaggaagaagacatcatcatcaa 558
||| | | | || | |||||| ||||||||||||||||| || ||| ||||| ||||
Sbjct: 390 cctgagagacggggtgaggaggggcaacatctccaaggaggaggacgacctcatcgtcaa 449
Query: 559 gctccacgccaccctcggcaacaggtggtccctgatcgccagccacctccccggccgaac 618
|| || |||||||| |||||||||||||||||||||||||||||||| || || |||||
Sbjct: 450 acttcatgccacccttggcaacaggtggtccctgatcgccagccacctaccaggacgaac 509
Query: 619 agacaacgagatcaagaactactggaactcgcacctcagccggcagatccacacgtaccg 678
|||||||| |||||||||||||||||||| || |||||||||||||||||||| | |||
Sbjct: 510 ggacaacgaaatcaagaactactggaactcccatctcagccggcagatccacaccttccg 569
Query: 679 ccggaaatacacc 691
|||| |||||||
Sbjct: 570 gcggatatacacc 582
>gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019E16f, mRNA sequence
Length = 625
Score = 135 bits (68), Expect = 5e-030
Identities = 197/240 (82%)
Strand = Plus / Plus
Query: 413 cacggcgaggggtcctggaggtcgctgcccaagaatgcaggcctgctccggtgcggcaag 472
||||||||||| | |||| | |||||||||||| || ||||| ||||| |||||||||
Sbjct: 173 cacggcgagggctgctggcgctcgctgcccaaggccgccggcctcctccgctgcggcaag 232
Query: 473 agctgccggctccggtggatcaactaccttcgggcggacgtcaagagggggaacatctcc 532
|||||||| ||||| ||||| |||||||| || | ||| ||||| | || ||| || ||
Sbjct: 233 agctgccgcctccgctggatgaactacctccgccctgacctcaagcgcggcaacttcacc 292
Query: 533 aaggaggaagaagacatcatcatcaagctccacgccaccctcggcaacaggtggtccctg 592
| || || || || |||||||||||||||||||| ||||||||||| |||||| ||
Sbjct: 293 gacgacgacgacgagctcatcatcaagctccacgccctcctcggcaacaagtggtcgttg 352
Query: 593 atcgccagccacctccccggccgaacagacaacgagatcaagaactactggaactcgcac 652
|| || | || ||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 353 atagcggggcagctccccggccggacggacaacgagatcaagaactactggaacacgcac 412
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 320 atggggagggcgccgtgctgcgagaagg 347
||||||||| ||||||||||||||||||
Sbjct: 80 atggggaggtcgccgtgctgcgagaagg 107
>gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019G16f, mRNA sequence
Length = 624
Score = 135 bits (68), Expect = 5e-030
Identities = 197/240 (82%)
Strand = Plus / Plus
Query: 413 cacggcgaggggtcctggaggtcgctgcccaagaatgcaggcctgctccggtgcggcaag 472
||||||||||| | |||| | |||||||||||| || ||||| ||||| |||||||||
Sbjct: 173 cacggcgagggctgctggcgctcgctgcccaaggccgccggcctcctccgctgcggcaag 232
Query: 473 agctgccggctccggtggatcaactaccttcgggcggacgtcaagagggggaacatctcc 532
|||||||| ||||| ||||| |||||||| || | ||| ||||| | || ||| || ||
Sbjct: 233 agctgccgcctccgctggatgaactacctccgccctgacctcaagcgcggcaacttcacc 292
Query: 533 aaggaggaagaagacatcatcatcaagctccacgccaccctcggcaacaggtggtccctg 592
| || || || || |||||||||||||||||||| ||||||||||| |||||| ||
Sbjct: 293 gacgacgacgacgagctcatcatcaagctccacgccctcctcggcaacaagtggtcgttg 352
Query: 593 atcgccagccacctccccggccgaacagacaacgagatcaagaactactggaactcgcac 652
|| || | || ||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 353 atagcggggcagctccccggccggacggacaacgagatcaagaactactggaacacgcac 412
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 320 atggggagggcgccgtgctgcgagaagg 347
||||||||| ||||||||||||||||||
Sbjct: 80 atggggaggtcgccgtgctgcgagaagg 107
>gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017F20f, mRNA sequence
Length = 786
Score = 101 bits (51), Expect = 7e-020
Identities = 153/187 (81%)
Strand = Plus / Plus
Query: 462 ggtgcggcaagagctgccggctccggtggatcaactaccttcgggcggacgtcaagaggg 521
||||||| ||||||||| |||| ||||||| |||||||| || ||||| |||||||||
Sbjct: 256 ggtgcgggaagagctgcaggctgaggtggataaactacctgaggccggacctcaagaggg 315
Query: 522 ggaacatctccaaggaggaagaagacatcatcatcaagctccacgccaccctcggcaaca 581
| | |||| ||||||| || ||| |||||||| | |||||| ||| |||||||||||
Sbjct: 316 gcgccttctcgcaggaggaggaggacctcatcatccacctccactccatcctcggcaaca 375
Query: 582 ggtggtccctgatcgccagccacctccccggccgaacagacaacgagatcaagaactact 641
|||||| | ||||||| || || |||||||| || ||||||||| ||||||||| ||
Sbjct: 376 agtggtctcagatcgccgcgcagctgcccggccgcaccgacaacgaggtcaagaacttct 435
Query: 642 ggaactc 648
|||||||
Sbjct: 436 ggaactc 442
>gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013M24f, mRNA sequence
Length = 471
Score = 101 bits (51), Expect = 7e-020
Identities = 126/151 (83%)
Strand = Plus / Plus
Query: 416 ggcgaggggtcctggaggtcgctgcccaagaatgcaggcctgctccggtgcggcaagagc 475
|||||||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||||
Sbjct: 259 ggcgagggctgctggaggtccctccccaaagccgcagggctgctgcggtgcgggaagagc 318
Query: 476 tgccggctccggtggatcaactaccttcgggcggacgtcaagagggggaacatctccaag 535
||| |||| ||||||||||||||||| || ||||| ||||| |||||||| || || ||
Sbjct: 319 tgcaggctgcggtggatcaactacctgaggccggacctcaagcgggggaacttcaccgag 378
Query: 536 gaggaagaagacatcatcatcaagctccacg 566
||||| || || ||||||||||||||||||
Sbjct: 379 gaggaggacgagctcatcatcaagctccacg 409
>gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002G15f, mRNA sequence
Length = 853
Score = 95.6 bits (48), Expect = 4e-018
Identities = 152/187 (81%)
Strand = Plus / Plus
Query: 462 ggtgcggcaagagctgccggctccggtggatcaactaccttcgggcggacgtcaagaggg 521
||||||| ||||||||| |||| ||||||| |||||||| || ||||| |||||||||
Sbjct: 336 ggtgcgggaagagctgcaggctgaggtggataaactacctgaggccggacctcaagaggg 395
Query: 522 ggaacatctccaaggaggaagaagacatcatcatcaagctccacgccaccctcggcaaca 581
| | |||| ||||||| || ||| |||||||| | || ||| ||| |||||||||||
Sbjct: 396 gcgccttctcgcaggaggaggaggacctcatcatccacctncactccatcctcggcaaca 455
Query: 582 ggtggtccctgatcgccagccacctccccggccgaacagacaacgagatcaagaactact 641
|||||| | ||||||| || || |||||||| || ||||||||| ||||||||| ||
Sbjct: 456 agtggtctcagatcgccgcgcagctgcccggccgcaccgacaacgaggtcaagaacttct 515
Query: 642 ggaactc 648
|||||||
Sbjct: 516 ggaactc 522
>gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018B03f, mRNA sequence
Length = 609
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 245 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 304
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 305 actacctgcggccggacatcaag 327
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggg 351
|||||||||||||||||||||||||||| ||||
Sbjct: 129 gatggggagggcgccgtgctgcgagaagatggg 161
>gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009G13f, mRNA sequence
Length = 673
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 66 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 125
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 126 actacctgcggccggacatcaag 148
>gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024H06f, mRNA sequence
Length = 906
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 240 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 299
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 300 actacctgcggccggacatcaag 322
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggg 351
|||||||||||||||||||||||||||| ||||
Sbjct: 124 gatggggagggcgccgtgctgcgagaagatggg 156
>gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0018A12f, mRNA sequence
Length = 777
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 230 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 289
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 290 actacctgcggccggacatcaag 312
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggg 351
|||||||||||||||||||||||||||| ||||
Sbjct: 114 gatggggagggcgccgtgctgcgagaagatggg 146
>gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005B14f, mRNA sequence
Length = 935
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 244 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 303
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 304 actacctgcggccggacatcaag 326
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggg 351
|||||||||||||||||||||||||||| ||||
Sbjct: 128 gatggggagggcgccgtgctgcgagaagatggg 160
>gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_H14 5', mRNA sequence
Length = 455
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 246 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 305
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 306 actacctgcggccggacatcaag 328
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggg 351
|||||||||||||||||| ||||||||| ||||
Sbjct: 130 gatggggagggcgccgtgttgcgagaagatggg 162
>gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G02 5', mRNA sequence
Length = 604
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 246 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 305
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 306 actacctgcggccggacatcaag 328
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggg 351
|||||||||||||||||| ||||||||| ||||
Sbjct: 130 gatggggagggcgccgtgttgcgagaagatggg 162
>gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G03 5', mRNA sequence
Length = 501
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 246 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 305
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 306 actacctgcggccggacatcaag 328
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggg 351
|||||||||||||||||| ||||||||| ||||
Sbjct: 130 gatggggagggcgccgtgttgcgagaagatggg 162
>gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_C21 5', mRNA sequence
Length = 681
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 234 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 293
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 294 actacctgcggccggacatcaag 316
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggg 351
|||||||||||||||||| ||||||||| ||||
Sbjct: 118 gatggggagggcgccgtgttgcgagaagatggg 150
>gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. vulgare cDNA clone HX13G05
5-PRIME, mRNA sequence
Length = 639
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 247 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 306
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 307 actacctgcggccggacatcaag 329
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggg 351
|||||||||||||||||| ||||||||| ||||
Sbjct: 131 gatggggagggcgccgtgttgcgagaagatggg 163
>emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcription factor
Length = 1180
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||||||||||||||||
Sbjct: 112 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggctccggtggatca 171
Query: 495 actaccttcgggcggacgtcaag 517
||||||| ||| ||||| |||||
Sbjct: 172 actacctgcggccggacatcaag 194
>gb|BF619532.3|BF619532 HVSMEc0003P10f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0003P10f, mRNA sequence
Length = 859
Score = 87.7 bits (44), Expect = 1e-015
Identities = 86/100 (86%)
Strand = Plus / Plus
Query: 435 cgctgcccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatca 494
||||||||||| | || || || || ||||||||||||||||||||| ||||||||||||
Sbjct: 238 cgctgcccaagcaagccgggcttctgcggtgcggcaagagctgccggatccggtggatca 297
Query: 495 actaccttcgggcggacgtcaagagggggaacatctccaa 534
||||||| ||| ||||| ||||| | || ||| |||||||
Sbjct: 298 actacctgcggccggacatcaagcgcggcaacttctccaa 337
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 319 gatggggagggcgccgtgctgcgagaaggtggg 351
|||||||||||||||||||||| ||||| ||||
Sbjct: 122 gatggggagggcgccgtgctgctagaagatggg 154
>gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024E22f, mRNA sequence
Length = 669
Score = 83.8 bits (42), Expect = 2e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 412 gcacggcgaggggtcctggaggtcgctgcccaagaatgcaggcctgctccggtgcggcaa 471
|||||||||||| | |||| | || ||||||||| || ||||||||||| ||||||||
Sbjct: 164 gcacggcgagggctgctggcgctccctgcccaaggccgccggcctgctccgctgcggcaa 223
Query: 472 gagctgccggctccggtggatcaactacct 501
||||||||| ||||| ||||||||||||||
Sbjct: 224 gagctgccgcctccgctggatcaactacct 253
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 620 gacaacgagatcaagaactactggaactcgcac 652
||||||||||||||||||||||||||| |||||
Sbjct: 372 gacaacgagatcaagaactactggaacacgcac 404
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 317 gcgatggggagggcgccgtgctgcgagaagg 347
|||||||||||| ||||||||||||||||||
Sbjct: 69 gcgatggggaggtcgccgtgctgcgagaagg 99
>gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114B11_SK.ab1 similar to myb protein homolog - rice
gi|1946265|emb|CAA72217.1| (Y11414) myb [Oryza sativa],
mRNA sequence
Length = 879
Score = 83.8 bits (42), Expect = 2e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 452 ggcctgctccggtgcggcaagagctgccggctccggtggatcaactaccttcgggcggac 511
|||||||| || |||||||||||||| || |||||||||||||||||||| || | |||
Sbjct: 296 ggcctgctgcgctgcggcaagagctgtcgcctccggtggatcaactacctgcgccccgac 355
Query: 512 gtcaagagggggaacatctccaaggaggaagaagacatcatcatcaagctccacgccacc 571
||||| | || ||| || ||| ||||| || ||| ||||||| ||||||||||||
Sbjct: 356 atcaagcgcggcaacttcaccagcgaggaggaggacgccatcatccagctccacgccatg 415
Query: 572 ctcggcaacaggtggtcc 589
||||||||||| ||||||
Sbjct: 416 ctcggcaacagatggtcc 433
Score = 52.0 bits (26), Expect = 6e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 320 atggggagggcgccgtgctgcgagaaggtggggctcaagcgagggaggtggacggcggaa 379
||||||||| | || |||||||||||| ||||||||||| | ||| |||||| |||||
Sbjct: 164 atggggaggtctccttgctgcgagaagatggggctcaagagggggccgtggacagcggag 223
Query: 380 gaggac 385
||||||
Sbjct: 224 gaggac 229
>gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_P07 5', mRNA sequence
Length = 523
Score = 83.8 bits (42), Expect = 2e-014
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 452 ggcctgctccggtgcggcaagagctgccggctccggtggatcaactaccttcgggcggac 511
|||||||| || |||||||||||||| || |||||||||||||||||||| || | |||
Sbjct: 266 ggcctgctgcgctgcggcaagagctgtcgcctccggtggatcaactacctgcgccccgac 325
Query: 512 gtcaagagggggaacatctccaaggaggaagaagacatcatcatcaagctccacgccacc 571
||||| | || ||| || ||| ||||| || ||| ||||||| ||||||||||||
Sbjct: 326 atcaagcgcggcaacttcaccagcgaggaggaggacgccatcatccagctccacgccatg 385
Query: 572 ctcggcaacaggtggtcc 589
||||||||||| ||||||
Sbjct: 386 ctcggcaacagatggtcc 403
Score = 52.0 bits (26), Expect = 6e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 320 atggggagggcgccgtgctgcgagaaggtggggctcaagcgagggaggtggacggcggaa 379
||||||||| | || |||| ||||||| ||||||||||| | ||| ||||||||||||
Sbjct: 134 atggggaggtctccttgctccgagaagatggggctcaagagggggccgtggacggcggag 193
Query: 380 gaggac 385
||||||
Sbjct: 194 gaggac 199
>emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA
Length = 1284
Score = 83.8 bits (42), Expect = 2e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 412 gcacggcgaggggtcctggaggtcgctgcccaagaatgcaggcctgctccggtgcggcaa 471
|||||||||||| | |||| | || ||||||||| || ||||||||||| ||||||||
Sbjct: 304 gcacggcgagggctgctggcgctccctgcccaaggccgccggcctgctccgctgcggcaa 363
Query: 472 gagctgccggctccggtggatcaactacct 501
||||||||| ||||| ||||||||||||||
Sbjct: 364 gagctgccgcctccgctggatcaactacct 393
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 620 gacaacgagatcaagaactactggaactcgcac 652
||||||||||||||||||||||||||| |||||
Sbjct: 512 gacaacgagatcaagaactactggaacacgcac 544
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 317 gcgatggggagggcgccgtgctgcgagaagg 347
|||||||||||| ||||||||||||||||||
Sbjct: 209 gcgatggggaggtcgccgtgctgcgagaagg 239
>emb|X70879.1|HVMYB1G H.vulgare Myb1 gene
Length = 2587
Score = 83.8 bits (42), Expect = 2e-014
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 412 gcacggcgaggggtcctggaggtcgctgcccaagaatgcaggcctgctccggtgcggcaa 471
|||||||||||| | |||| | || ||||||||| || ||||||||||| ||||||||
Sbjct: 1094 gcacggcgagggctgctggcgctccctgcccaaggccgccggcctgctccgctgcggcaa 1153
Query: 472 gagctgccggctccggtggatcaactacct 501
||||||||| ||||| ||||||||||||||
Sbjct: 1154 gagctgccgcctccgctggatcaactacct 1183
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 620 gacaacgagatcaagaactactggaactcgcac 652
||||||||||||||||||||||||||| |||||
Sbjct: 1448 gacaacgagatcaagaactactggaacacgcac 1480
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 317 gcgatggggagggcgccgtgctgcgagaagg 347
|||||||||||| ||||||||||||||||||
Sbjct: 999 gcgatggggaggtcgccgtgctgcgagaagg 1029
>gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01B16
3-PRIME, mRNA sequence
Length = 535
Score = 81.8 bits (41), Expect = 6e-014
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 558 agctccacgccaccctcggcaacaggtggtccctgatcgccagccacctccccggccgaa 617
|||||||||||| | ||||||||| ||||||| ||||||| || || |||||||| |
Sbjct: 341 agctccacgccatcgtcggcaacaagtggtccatgatcgcggcgcagctgcccggccgga 400
Query: 618 cagacaacgagatcaagaactactggaac 646
| |||||||||||||||||||||||||||
Sbjct: 401 cggacaacgagatcaagaactactggaac 429
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 460 ccggtgcggcaagagctgccggctccggtggatcaactaccttcgggcggacgtcaag 517
|||||||||||||||||||||||| ||||||| |||||||| ||| ||||| |||||
Sbjct: 243 ccggtgcggcaagagctgccggctgcggtggacgaactacctccggccggacatcaag 300
>gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M184 5-PRIME, mRNA sequence
Length = 506
Score = 81.8 bits (41), Expect = 6e-014
Identities = 149/185 (80%)
Strand = Plus / Plus
Query: 462 ggtgcggcaagagctgccggctccggtggatcaactaccttcgggcggacgtcaagaggg 521
||||||| |||||||||||||| |||||| |||||||||| ||| ||| ||||||| |
Sbjct: 167 ggtgcgggaagagctgccggctgcggtggctcaactacctccggccggggatcaagagag 226
Query: 522 ggaacatctccaaggaggaagaagacatcatcatcaagctccacgccaccctcggcaaca 581
| ||||||||| | || || || || ||||| ||| ||||||| || |||||||
Sbjct: 227 gcaacatctccgacgacgaggaggagctcatcgtcaggctccacaggttgctaggcaaca 286
Query: 582 ggtggtccctgatcgccagccacctccccggccgaacagacaacgagatcaagaactact 641
||||||| |||||||| | | || || || ||||||||||| ||||||||||||||||
Sbjct: 287 ggtggtcgctgatcgcggggcggctgccggggcgaacagacaatgagatcaagaactact 346
Query: 642 ggaac 646
|||||
Sbjct: 347 ggaac 351
>gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. vulgare cDNA clone HI10A14
5-PRIME, mRNA sequence
Length = 580
Score = 79.8 bits (40), Expect = 3e-013
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 462 ggtgcggcaagagctgccggctccggtggatcaactaccttcgggcggacgtcaagaggg 521
|||| |||||||||||| |||| ||||||||||||||||| || ||||| |||||||||
Sbjct: 203 ggtgtggcaagagctgcaggctgcggtggatcaactacctgaggccggacctcaagaggg 262
Query: 522 ggaacatctccaaggaggaagaagacatcatcatcaagctccac 565
||| | |||| ||||||| |||| | ||||| || ||||||||
Sbjct: 263 ggagcttctcgcaggaggaggaagccctcatcgtcgagctccac 306
>gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002J21f, mRNA sequence
Length = 845
Score = 75.8 bits (38), Expect = 4e-012
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 464 tgcggcaagagctgccggctccggtggatcaactacct 501
||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tgcggcaagagctgccggctccggtggatcaactacct 226
>gb|AV914947.1|AV914947 AV914947 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9c13 5', mRNA sequence
Length = 506
Score = 75.8 bits (38), Expect = 4e-012
Identities = 113/138 (81%)
Strand = Plus / Plus
Query: 452 ggcctgctccggtgcggcaagagctgccggctccggtggatcaactaccttcgggcggac 511
|||||||| || |||||||||||||| || |||||||||||||||||||| || | |||
Sbjct: 104 ggcctgctgcgctgcggcaagagctgtcgcctccggtggatcaactacctgcgccccgac 163
Query: 512 gtcaagagggggaacatctccaaggaggaagaagacatcatcatcaagctccacgccacc 571
||||| | || ||| || ||| ||||| || | | ||||||| ||||||||||||
Sbjct: 164 atcaagcgcggcaacttcaccagcgaggaggagggcgccatcatccagctccacgccatg 223
Query: 572 ctcggcaacaggtggtcc 589
||||||||||| ||||||
Sbjct: 224 ctcggcaacagatggtcc 241
>gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. vulgare cDNA clone HV11C18
5-PRIME, mRNA sequence
Length = 583
Score = 75.8 bits (38), Expect = 4e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 452 ggcctgctccggtgcggcaagagctgccggctccggtggatcaactacct 501
||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 26 ggcctgctccgctgcggcaagagctgccgcctccgctggatcaactacct 75
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 620 gacaacgagatcaagaactactggaactcgcac 652
||||||||||||||||||||||||||| |||||
Sbjct: 194 gacaacgagatcaagaactactggaacacgcac 226
>gb|CA027463.1|CA027463 HZ59A03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59A03
5-PRIME, mRNA sequence
Length = 436
Score = 75.8 bits (38), Expect = 4e-012
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 575 ggcaacaggtggtccctgatcgccagccacctccccggccgaacagacaacgagatcaag 634
|||||| | |||||| ||||||||| |||||||||||||| || |||||||||||||||
Sbjct: 289 ggcaaccgctggtccaagatcgccaggcacctccccggccggaccgacaacgagatcaag 348
Query: 635 aactactgga 644
|||| |||||
Sbjct: 349 aacttctgga 358
Score = 40.1 bits (20), Expect = 0.22
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 470 aagagctgccggctccggtggatcaactacct 501
|||||||||||||| |||||| | ||||||||
Sbjct: 184 aagagctgccggctgcggtggctgaactacct 215
>gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004H07f, mRNA sequence
Length = 756
Score = 73.8 bits (37), Expect = 2e-011
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 572 ctcggcaacaggtggtccctgatcgccagccacctccccggccgaacagacaacgagatc 631
|||||||||| |||||| || |||||| |||| || || ||| | || ||||||||||||
Sbjct: 304 ctcggcaacaagtggtctctcatcgccggccagctgccgggcaggacggacaacgagatc 363
Query: 632 aagaactactggaactcgcac 652
||||||||||||||| |||||
Sbjct: 364 aagaactactggaacacgcac 384
Score = 71.9 bits (36), Expect = 6e-011
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 414 acggcgaggggtcctggaggtcgctgcccaagaatgcaggcctgctccggtgcggcaaga 473
|||||||||| | |||| | |||||||||||| || |||||||| || ||||||||||
Sbjct: 146 acggcgagggctgctggcgctcgctgcccaaggcggcgggcctgctgcgctgcggcaaga 205
Query: 474 gctgccggctccggtggatcaactacct 501
||||||| ||||| ||||| ||||||||
Sbjct: 206 gctgccgcctccgctggatgaactacct 233
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 320 atggggagggcgccgtgctgcgagaagg 347
||||||||| ||||||||||||||||||
Sbjct: 52 atggggaggtcgccgtgctgcgagaagg 79
>gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. vulgare cDNA clone HS02O24
5-PRIME, mRNA sequence
Length = 363
Score = 73.8 bits (37), Expect = 2e-011
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 572 ctcggcaacaggtggtccctgatcgccagccacctccccggccgaacagacaacgagatc 631
||||||||||||||| || ||||||| | ||||||||| || || |||||||| |||
Sbjct: 230 ctcggcaacaggtgggccgcgatcgcctcctacctccccgagcgcaccgacaacgacatc 289
Query: 632 aagaactactggaactcgcacctca 656
||||||||||||||| |||||||||
Sbjct: 290 aagaactactggaacacgcacctca 314
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 452 ggcctgctccggtgcggcaagagctgccggctccggtggatcaactacct 501
|||||| | |||||| |||||||||||||||||||||||| |||||||||
Sbjct: 110 ggcctgatgcggtgcagcaagagctgccggctccggtggaccaactacct 159
>gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcription factor mRNA,
complete cds
Length = 1542
Score = 73.8 bits (37), Expect = 2e-011
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 461 cggtgcggcaagagctgccggctccggtggatcaactacct 501
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 287 cggtgcggcaagagctgccgcctccggtggatcaactacct 327
Score = 58.0 bits (29), Expect = 9e-007
Identities = 85/101 (84%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 549 tcatcatcaagctccacgccaccctcggcaacaggtggtccctgatcgccagccacctcc 608
||||| |||| |||||||||| |||||||||||| ||||| | |||||| ||||| |
Sbjct: 375 tcatcgtcaacctccacgccatcctcggcaacagatggtctcagatcgc-agccaggtta 433
Query: 609 ccggc-cgaacagacaacgagatcaagaactactggaactc 648
|||| || || ||||||||||||||||||| |||||||||
Sbjct: 434 ccggggcgcaccgacaacgagatcaagaacttctggaactc 474
>emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA
Length = 1102
Score = 73.8 bits (37), Expect = 2e-011
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 572 ctcggcaacaggtggtccctgatcgccagccacctccccggccgaacagacaacgagatc 631
|||||||||| |||||| || |||||| |||| || || ||| | || ||||||||||||
Sbjct: 296 ctcggcaacaagtggtctctcatcgccggccagctgccgggcaggacggacaacgagatc 355
Query: 632 aagaactactggaactcgcac 652
||||||||||||||| |||||
Sbjct: 356 aagaactactggaacacgcac 376
Score = 71.9 bits (36), Expect = 6e-011
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 414 acggcgaggggtcctggaggtcgctgcccaagaatgcaggcctgctccggtgcggcaaga 473
|||||||||| | |||| | |||||||||||| || |||||||| || ||||||||||
Sbjct: 138 acggcgagggctgctggcgctcgctgcccaaggcggcgggcctgctgcgctgcggcaaga 197
Query: 474 gctgccggctccggtggatcaactacct 501
||||||| ||||| ||||| ||||||||
Sbjct: 198 gctgccgcctccgctggatgaactacct 225
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 320 atggggagggcgccgtgctgcgagaagg 347
||||||||| ||||||||||||||||||
Sbjct: 44 atggggaggtcgccgtgctgcgagaagg 71
>gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0014M02f, mRNA sequence
Length = 771
Score = 71.9 bits (36), Expect = 6e-011
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 414 acggcgaggggtcctggaggtcgctgcccaagaatgcaggcctgctccggtgcggcaaga 473
|||||||||| | |||| | |||||||||||| || |||||||| || ||||||||||
Sbjct: 130 acggcgagggctgctggcgctcgctgcccaaggcggcgggcctgctgcgctgcggcaaga 189
Query: 474 gctgccggctccggtggatcaactacct 501
||||||| ||||| ||||| ||||||||
Sbjct: 190 gctgccgcctccgctggatgaactacct 217
Score = 65.9 bits (33), Expect = 4e-009
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 572 ctcggcaacaggtggtccctgatcgccagccacctccccggccgaacagacaacgagatc 631
|||||||||| |||||| || |||||| |||| || || ||| | || ||||||||||||
Sbjct: 288 ctcggcaacaagtggtctctcatcgccggccagctgccgggcaggacggacaacgagatc 347
Query: 632 aagaactactggaactcgcac 652
|| |||||||||||| |||||
Sbjct: 348 aaaaactactggaacacgcac 368
>gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. vulgare cDNA clone HI05J08
5-PRIME, mRNA sequence
Length = 436
Score = 71.9 bits (36), Expect = 6e-011
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 462 ggtgcggcaagagctgccggctccggtggatcaactacct 501
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 249 ggtgcggcaagagctgccggctgcggtggatcaactacct 288
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 611 ggccgaacagacaacgagatcaagaactactggaac 646
||||| || ||||||||||||||||||| |||||||
Sbjct: 398 ggccggacggacaacgagatcaagaacttctggaac 433
>emb|X70880.1|HVMYB2G H.vulgare Myb2 gene
Length = 1093
Score = 71.9 bits (36), Expect = 6e-011
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 414 acggcgaggggtcctggaggtcgctgcccaagaatgcaggcctgctccggtgcggcaaga 473
|||||||||| | |||| | |||||||||||| || |||||||| || ||||||||||
Sbjct: 740 acggcgagggctgctggcgctcgctgcccaaggcggcgggcctgctgcgctgcggcaaga 799
Query: 474 gctgccggctccggtggatcaactacct 501
||||||| ||||| ||||| ||||||||
Sbjct: 800 gctgccgcctccgctggatgaactacct 827
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 320 atggggagggcgccgtgctgcgagaagg 347
||||||||| ||||||||||||||||||
Sbjct: 646 atggggaggtcgccgtgctgcgagaagg 673
>gb|BF259477.2|BF259477 HVSMEf0019D12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019D12f, mRNA sequence
Length = 577
Score = 67.9 bits (34), Expect = 1e-009
Identities = 166/210 (79%)
Strand = Plus / Plus
Query: 448 tgcaggcctgctccggtgcggcaagagctgccggctccggtggatcaactaccttcgggc 507
|||||||||| | |||| || ||||||||| |||| | |||| ||||||||| | |
Sbjct: 212 tgcaggcctgaacaggtgtggtaagagctgcaggctaagatggaccaactacctgaagcc 271
Query: 508 ggacgtcaagagggggaacatctccaaggaggaagaagacatcatcatcaagctccacgc 567
|||| ||||||| ||||| ||||| |||||||||| | | |||| || |||| ||| |
Sbjct: 272 ggacatcaagagagggaagttctcccaggaggaagagcaaaccatcctccagctgcacac 331
Query: 568 caccctcggcaacaggtggtccctgatcgccagccacctccccggccgaacagacaacga 627
| ||| ||||||| |||||| ||||| | |||||||| || || |||||||||||
Sbjct: 332 cgtccttggcaacaagtggtcggctatcgcaaagcacctccctggacggacagacaacga 391
Query: 628 gatcaagaactactggaactcgcacctcag 657
||||||||||| ||||||| | ||||||||
Sbjct: 392 gatcaagaacttctggaacacccacctcag 421
>gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E14f, mRNA sequence
Length = 635
Score = 67.9 bits (34), Expect = 1e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 464 tgcggcaagagctgccggctccggtggatcaactacct 501
||||||||||||||||| ||||||||||||||||||||
Sbjct: 230 tgcggcaagagctgccgcctccggtggatcaactacct 267
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 571 cctcggcaacaggtggtccctgatcgccagccacctccccggccgaacagacaacgagat 630
|||||||||||||||||| | |||||| ||||| || ||||| || |||||||||||
Sbjct: 337 cctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgagat 396
Query: 631 caagaactactggaac 646
|||||||| |||||||
Sbjct: 397 caagaacttctggaac 412
>gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019O20f, mRNA sequence
Length = 528
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 452 ggcctgctccggtgcggcaagagctgccggctccggtggatcaactacct 501
|||||||| || ||||||||||||||||| ||| ||||||||||||||||
Sbjct: 200 ggcctgctgcgctgcggcaagagctgccgcctcaggtggatcaactacct 249
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 620 gacaacgagatcaagaactactggaactcgcac 652
||||||||||||||||||||||||||| |||||
Sbjct: 368 gacaacgagatcaagaactactggaacacgcac 400
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 320 atggggagggcgccgtgctgcgagaagg 347
|||||| || ||||||||||||||||||
Sbjct: 68 atggggcggtcgccgtgctgcgagaagg 95
>gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_O04 5', mRNA sequence
Length = 383
Score = 67.9 bits (34), Expect = 1e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 464 tgcggcaagagctgccggctccggtggatcaactacct 501
||||||||||||||||| ||||||||||||||||||||
Sbjct: 143 tgcggcaagagctgccgcctccggtggatcaactacct 180
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 571 cctcggcaacaggtggtccctgatcgccagccacctccccggccgaacagacaacgagat 630
|||||||||||||||||| | |||||| ||||| || ||||| || |||||||||||
Sbjct: 250 cctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgagat 309
Query: 631 caagaactactggaac 646
|||||||| |||||||
Sbjct: 310 caagaacttctggaac 325
>gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. vulgare cDNA clone HM13L14
5-PRIME, mRNA sequence
Length = 648
Score = 67.9 bits (34), Expect = 1e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 464 tgcggcaagagctgccggctccggtggatcaactacct 501
||||||||||||||||| ||||||||||||||||||||
Sbjct: 239 tgcggcaagagctgccgcctccggtggatcaactacct 276
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 571 cctcggcaacaggtggtccctgatcgccagccacctccccggccgaacagacaacgagat 630
|||||||||||||||||| | |||||| ||||| || ||||| || |||||||||||
Sbjct: 346 cctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgagat 405
Query: 631 caagaactactggaac 646
|||||||| |||||||
Sbjct: 406 caagaacttctggaac 421
>gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL17E10 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 479
Score = 67.9 bits (34), Expect = 1e-009
Identities = 84/98 (85%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 560 ctccacgccaccctcggcaacaggtggtccctgatcgc-cagccacctccccggccgaac 618
||||||||| |||||||||||| |||||| | ||| || |||| |||| || ||||| ||
Sbjct: 298 ctccacgccgccctcggcaacaagtggtctcagatagcgcagc-acctgccgggccggac 356
Query: 619 agacaacgagatcaagaactactggaactcgcacctca 656
||||||||| | |||||||||||||||||| ||||||
Sbjct: 357 ggacaacgaggtgaagaactactggaactcgtacctca 394
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 466 cggcaagagctgccggctccggtggatcaactacct 501
||||||||||||| |||| || ||||||||||||||
Sbjct: 204 cggcaagagctgcaggctgcgatggatcaactacct 239
>gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL20h7 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 514
Score = 67.9 bits (34), Expect = 1e-009
Identities = 84/98 (85%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 560 ctccacgccaccctcggcaacaggtggtccctgatcgc-cagccacctccccggccgaac 618
||||||||| |||||||||||| |||||| | ||| || |||| |||| || ||||| ||
Sbjct: 378 ctccacgccgccctcggcaacaagtggtctcagatagcgcagc-acctgccgggccggac 436
Query: 619 agacaacgagatcaagaactactggaactcgcacctca 656
||||||||| | |||||||||||||||||| ||||||
Sbjct: 437 ggacaacgaggtgaagaactactggaactcgtacctca 474
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 466 cggcaagagctgccggctccggtggatcaactacct 501
||||||||||||| |||| || ||||||||||||||
Sbjct: 284 cggcaagagctgcaggctgcgatggatcaactacct 319
>gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL40g12 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 488
Score = 67.9 bits (34), Expect = 1e-009
Identities = 84/98 (85%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 560 ctccacgccaccctcggcaacaggtggtccctgatcgc-cagccacctccccggccgaac 618
||||||||| |||||||||||| |||||| | ||| || |||| |||| || ||||| ||
Sbjct: 378 ctccacgccgccctcggcaacaagtggtctcagatagcgcagc-acctgccgggccggac 436
Query: 619 agacaacgagatcaagaactactggaactcgcacctca 656
||||||||| | |||||||||||||||||| ||||||
Sbjct: 437 ggacaacgaggtgaagaactactggaactcgtacctca 474
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 466 cggcaagagctgccggctccggtggatcaactacct 501
||||||||||||| |||| || ||||||||||||||
Sbjct: 284 cggcaagagctgcaggctgcgatggatcaactacct 319
>gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42d1 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 478
Score = 67.9 bits (34), Expect = 1e-009
Identities = 84/98 (85%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 560 ctccacgccaccctcggcaacaggtggtccctgatcgc-cagccacctccccggccgaac 618
||||||||| |||||||||||| |||||| | ||| || |||| |||| || ||||| ||
Sbjct: 298 ctccacgccgccctcggcaacaagtggtctcagatagcgcagc-acctgccgggccggac 356
Query: 619 agacaacgagatcaagaactactggaactcgcacctca 656
||||||||| | |||||||||||||||||| ||||||
Sbjct: 357 ggacaacgaggtgaagaactactggaactcgtacctca 394
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 466 cggcaagagctgccggctccggtggatcaactacct 501
||||||||||||| |||| || ||||||||||||||
Sbjct: 204 cggcaagagctgcaggctgcgatggatcaactacct 239
>gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL79d11 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 558
Score = 67.9 bits (34), Expect = 1e-009
Identities = 84/98 (85%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 560 ctccacgccaccctcggcaacaggtggtccctgatcgc-cagccacctccccggccgaac 618
||||||||| |||||||||||| |||||| | ||| || |||| |||| || ||||| ||
Sbjct: 378 ctccacgccgccctcggcaacaagtggtctcagatagcgcagc-acctgccgggccggac 436
Query: 619 agacaacgagatcaagaactactggaactcgcacctca 656
||||||||| | |||||||||||||||||| ||||||
Sbjct: 437 ggacaacgaggtgaagaactactggaactcgtacctca 474
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 466 cggcaagagctgccggctccggtggatcaactacct 501
||||||||||||| |||| || ||||||||||||||
Sbjct: 284 cggcaagagctgcaggctgcgatggatcaactacct 319
>gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL83e5 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 588
Score = 67.9 bits (34), Expect = 1e-009
Identities = 84/98 (85%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 560 ctccacgccaccctcggcaacaggtggtccctgatcgc-cagccacctccccggccgaac 618
||||||||| |||||||||||| |||||| | ||| || |||| |||| || ||||| ||
Sbjct: 404 ctccacgccgccctcggcaacaagtggtctcagatagcgcagc-acctgccgggccggac 462
Query: 619 agacaacgagatcaagaactactggaactcgcacctca 656
||||||||| | |||||||||||||||||| ||||||
Sbjct: 463 ggacaacgaggtgaagaactactggaactcgtacctca 500
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 466 cggcaagagctgccggctccggtggatcaactacct 501
||||||||||||| |||| || ||||||||||||||
Sbjct: 310 cggcaagagctgcaggctgcgatggatcaactacct 345
>gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL92e6 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 478
Score = 67.9 bits (34), Expect = 1e-009
Identities = 84/98 (85%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 560 ctccacgccaccctcggcaacaggtggtccctgatcgc-cagccacctccccggccgaac 618
||||||||| |||||||||||| |||||| | ||| || |||| |||| || ||||| ||
Sbjct: 298 ctccacgccgccctcggcaacaagtggtctcagatagcgcagc-acctgccgggccggac 356
Query: 619 agacaacgagatcaagaactactggaactcgcacctca 656
||||||||| | |||||||||||||||||| ||||||
Sbjct: 357 ggacaacgaggtgaagaactactggaactcgtacctca 394
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 466 cggcaagagctgccggctccggtggatcaactacct 501
||||||||||||| |||| || ||||||||||||||
Sbjct: 204 cggcaagagctgcaggctgcgatggatcaactacct 239
>emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA
Length = 1270
Score = 67.9 bits (34), Expect = 1e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 464 tgcggcaagagctgccggctccggtggatcaactacct 501
||||||||||||||||| ||||||||||||||||||||
Sbjct: 215 tgcggcaagagctgccgcctccggtggatcaactacct 252
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 571 cctcggcaacaggtggtccctgatcgccagccacctccccggccgaacagacaacgagat 630
|||||||||||||||||| | |||||| ||||| || ||||| || |||||||||||
Sbjct: 322 cctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgagat 381
Query: 631 caagaactactggaac 646
|||||||| |||||||
Sbjct: 382 caagaacttctggaac 397
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 259,739
Number of Sequences: 312970
Number of extensions: 259739
Number of successful extensions: 79282
Number of sequences better than 0.5: 99
Number of HSP's better than 0.5 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78953
Number of HSP's gapped (non-prelim): 315
length of query: 1601
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1582
effective length of database: 169,188,109
effective search space: 267655588438
effective search space used: 267655588438
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)