BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021175.2.1
(1225 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA018793.1|CA018793 HV09K18r HV Hordeum vulgare subsp. v... 299 1e-079
gb|BF258050.2|BF258050 HVSMEf0014J23f Hordeum vulgare seedl... 260 1e-067
gb|BM370277.2|BM370277 EBro08_SQ003_L08_R root, 3 week, dro... 170 7e-041
gb|CA016225.1|CA016225 HV09K18u HV Hordeum vulgare subsp. v... 135 4e-030
gb|CA016489.1|CA016489 HV08K17u HV Hordeum vulgare subsp. v... 135 4e-030
gb|CB882390.1|CB882390 HL01L20w HL Hordeum vulgare subsp. v... 127 9e-028
gb|BF254580.2|BF254580 HVSMEf0004G18f Hordeum vulgare seedl... 90 2e-016
gb|BM370613.2|BM370613 EBro08_SQ004_L22_R root, 3 week, dro... 68 7e-010
gb|BQ767003.1|BQ767003 EBro08_SQ007_P13_R root, 3 week, dro... 66 3e-009
gb|BF253765.2|BF253765 HVSMEf0002B02f Hordeum vulgare seedl... 52 4e-005
gb|BQ470569.1|BQ470569 HX03F24r HX Hordeum vulgare subsp. v... 42 0.043
gb|AL504187.1|AL504187 AL504187 Hordeum vulgare Barke roots... 40 0.17
gb|AL507327.1|AL507327 AL507327 Hordeum vulgare Barke devel... 40 0.17
gb|AL507381.1|AL507381 AL507381 Hordeum vulgare Barke devel... 40 0.17
gb|BF623263.2|BF623263 HVSMEa0016C17f Hordeum vulgare seedl... 40 0.17
gb|BF630809.2|BF630809 HVSMEb0014B23f Hordeum vulgare seedl... 40 0.17
gb|BI953129.1|BI953129 HVSMEm0011E17f Hordeum vulgare green... 40 0.17
gb|BI956266.1|BI956266 HVSMEn0001M12f Hordeum vulgare rachi... 40 0.17
gb|BE601944.3|BE601944 HVSMEh0100F18f Hordeum vulgare 5-45 ... 40 0.17
gb|BQ458624.1|BQ458624 HA04K16r HA Hordeum vulgare subsp. v... 40 0.17
gb|BQ471514.1|BQ471514 HV02K15r HV Hordeum vulgare subsp. v... 40 0.17
gb|BQ471636.1|BQ471636 HV03A07r HV Hordeum vulgare subsp. v... 40 0.17
gb|BQ472115.1|BQ472115 HV04H07r HV Hordeum vulgare subsp. v... 40 0.17
gb|BQ657258.1|BQ657258 HA09A16u HA Hordeum vulgare subsp. v... 40 0.17
gb|BM442303.2|BM442303 EBan01_SQ002_M14_R anther, yellow st... 40 0.17
gb|BM442548.2|BM442548 EBan01_SQ003_H21_R anther, yellow st... 40 0.17
gb|BI780962.2|BI780962 EBma05_SQ001_L11_R maternal, 12 DPA,... 40 0.17
gb|BM371485.2|BM371485 EBma08_SQ002_O11_R maternal, 28 DPA,... 40 0.17
gb|BI779246.2|BI779246 EBro01_SQ003_H02_R root, 3 week, hyd... 40 0.17
gb|BQ756755.1|BQ756755 EBem09_SQ003_K15_R embryo, 1 Day ger... 40 0.17
gb|BQ764606.1|BQ764606 EBca01_SQ004_J07_R carpel, pre-anthe... 40 0.17
gb|BU976780.1|BU976780 HA10E20r HA Hordeum vulgare subsp. v... 40 0.17
gb|BU976941.1|BU976941 HA10J06r HA Hordeum vulgare subsp. v... 40 0.17
gb|BU977004.1|BU977004 HA10K22r HA Hordeum vulgare subsp. v... 40 0.17
gb|BU978908.1|BU978908 HA14J19r HA Hordeum vulgare subsp. v... 40 0.17
gb|BU979717.1|BU979717 HA17A17r HA Hordeum vulgare subsp. v... 40 0.17
gb|BU980321.1|BU980321 HA20F06r HA Hordeum vulgare subsp. v... 40 0.17
gb|BU980348.1|BU980348 HA20G13r HA Hordeum vulgare subsp. v... 40 0.17
gb|BU994907.1|BU994907 HM08J05r HM Hordeum vulgare subsp. v... 40 0.17
gb|CA003964.1|CA003964 HS16C09r HS Hordeum vulgare subsp. v... 40 0.17
gb|CA017491.1|CA017491 HV05F22r HV Hordeum vulgare subsp. v... 40 0.17
gb|CA024700.1|CA024700 HZ50A24r HZ Hordeum vulgare subsp. v... 40 0.17
gb|CA029021.1|CA029021 HZ63P11r HZ Hordeum vulgare subsp. v... 40 0.17
gb|CA031146.1|CA031146 HX09C10r HX Hordeum vulgare subsp. v... 40 0.17
gb|CB875740.1|CB875740 HX09D13w HX Hordeum vulgare subsp. v... 40 0.17
gb|CV054222.1|CV054222 BNEL108b11 Barley EST endosperm libr... 40 0.17
gb|CV055117.1|CV055117 BNEL117a4 Barley EST endosperm libra... 40 0.17
gb|CV055926.1|CV055926 BNEL12A2 Barley EST endosperm librar... 40 0.17
gb|CV058528.1|CV058528 BNEL39a12 Barley EST endosperm libra... 40 0.17
gb|CV062106.1|CV062106 BNEL76d4 Barley EST endosperm librar... 40 0.17
gb|CV062196.1|CV062196 BNEL77d2 Barley EST endosperm librar... 40 0.17
emb|AJ534446.1|HVU534446 Hordeum vulgare mRNA for sugar tra... 40 0.17
>gb|CA018793.1|CA018793 HV09K18r HV Hordeum vulgare subsp. vulgare cDNA clone HV09K18
5-PRIME, mRNA sequence
Length = 647
Score = 299 bits (151), Expect = 1e-079
Identities = 235/263 (89%)
Strand = Plus / Plus
Query: 276 gtgcccaagctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcga 335
||||||| |||||||||| | |||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 320 gtgcccaggctgcaagacctactgcatgtgcgacttctaccccggcgtgtcctgcggtga 379
Query: 336 cccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaaggaccggga 395
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 380 cccccgcttcaccggcgccgacggcaacaacttctacttccacggcaagaaggaccagag 439
Query: 396 cttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaa 455
||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||
Sbjct: 440 cttctgcgtcgtctccgacaccgacctccacatcaacgcccacttcatcggcaagcgtaa 499
Query: 456 cccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcacca 515
||| |||||||||| |||||||||||||||||||| || |||||||||||||| ||||
Sbjct: 500 ccctaccatgagccgagacttcacctggatccaggccctcggcatccgcttcgccgacca 559
Query: 516 ccacctctacgtcgccgcccaga 538
|| ||| ||| | | ||||||||
Sbjct: 560 ccgcctttacatgggcgcccaga 582
>gb|BF258050.2|BF258050 HVSMEf0014J23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014J23f, mRNA sequence
Length = 574
Score = 260 bits (131), Expect = 1e-067
Identities = 206/231 (89%)
Strand = Plus / Plus
Query: 276 gtgcccaagctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcga 335
||||||| |||||||||| | |||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 298 gtgcccaggctgcaagacctactgcatgtgcgacttctaccccggcgtgtcctgcggtga 357
Query: 336 cccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaaggaccggga 395
||| ||||| || |||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct: 358 cccccgctttaccggcgccgacggcaacaacttttacttccacggcatgaaggaccagag 417
Query: 396 cttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaa 455
||||||| ||||||||||| ||| ||||||||| ||||| ||||||||||||||||| ||
Sbjct: 418 cttctgcgtcgtctccgacaccgacctccacattaacgcccacttcatcggcaagcgtaa 477
Query: 456 cccggccatgagccgcgacttcacctggatccaggcgctgggcatccgctt 506
||| |||||||||| |||||||||||||||||||| || |||||||||||
Sbjct: 478 ccctaccatgagccgagacttcacctggatccaggcccttggcatccgctt 528
>gb|BM370277.2|BM370277 EBro08_SQ003_L08_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_L08 5', mRNA sequence
Length = 568
Score = 170 bits (86), Expect = 7e-041
Identities = 173/202 (85%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
||||| ||||| |||||||| |||| |||||||||| ||||||||||||||||||||||
Sbjct: 362 tgcggggaccctcgcttcaccggcggggacggcaacaccttctacttccacggcaagaag 421
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
|||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 422 gaccaggacttctgcatcgtctccgacgaggccctccacatcaacgcccacttcatcggc 481
Query: 448 aagcgcaacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttc 507
|| | |||||| ||| | | ||| |||||| ||||||||||| | ||| || |||||
Sbjct: 482 aaccacaaccccgccgtaaagcgcagcttcacgtggatccaggccatcggcgtcagcttc 541
Query: 508 gcgcaccaccacctctacgtcg 529
| || |||| |||||||||||
Sbjct: 542 ggacagcaccgcctctacgtcg 563
>gb|CA016225.1|CA016225 HV09K18u HV Hordeum vulgare subsp. vulgare cDNA clone HV09K18
3-PRIME, mRNA sequence
Length = 553
Score = 135 bits (68), Expect = 4e-030
Identities = 148/172 (86%), Gaps = 2/172 (1%)
Strand = Plus / Minus
Query: 811 gcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctg 870
|||||| ||||| | || ||||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 447 gcgcacttcgacatggggttcaagttccacggcctcaccgacgacgtccacggcgtgctc 388
Query: 871 ggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaacatgcccgtc 930
||||| ||||||||| ||||||||||||||| |||| ||| | ||||||||||| ||
Sbjct: 387 ggccaaacctaccgcacggactacgtcaacaagctcagcgtgagtgccaacatgcccatc 328
Query: 931 atgggaggcg-cgccggactacctctcctccgacctcttctccaccgactgc 981
|||||||||| |||| | |||| | ||||||||| |||||||||||||||||
Sbjct: 327 atgggaggcgccgccag-ctacgtttcctccgacatcttctccaccgactgc 277
>gb|CA016489.1|CA016489 HV08K17u HV Hordeum vulgare subsp. vulgare cDNA clone HV08K17
3-PRIME, mRNA sequence
Length = 555
Score = 135 bits (68), Expect = 4e-030
Identities = 148/172 (86%), Gaps = 2/172 (1%)
Strand = Plus / Minus
Query: 811 gcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctg 870
|||||| ||||| | || ||||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 447 gcgcacttcgacatggggttcaagttccacggcctcaccgacgacgtccacggcgtgctc 388
Query: 871 ggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaacatgcccgtc 930
||||| ||||||||| ||||||||||||||| |||| ||| | ||||||||||| ||
Sbjct: 387 ggccaaacctaccgcacggactacgtcaacaagctcagcgtgagtgccaacatgcccatc 328
Query: 931 atgggaggcg-cgccggactacctctcctccgacctcttctccaccgactgc 981
|||||||||| |||| | |||| | ||||||||| |||||||||||||||||
Sbjct: 327 atgggaggcgccgccag-ctacgtttcctccgacatcttctccaccgactgc 277
>gb|CB882390.1|CB882390 HL01L20w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L20
3-PRIME, mRNA sequence
Length = 562
Score = 127 bits (64), Expect = 9e-028
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 420 cctccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcac 479
||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 20 cctccacatcaacgctcacttcatcggcaagcgcaaccccgctatgagccgtgacttcac 79
Query: 480 ctggatccaggcgctgggcatccg 503
|||||||||||| |||||||||||
Sbjct: 80 ctggatccaggctctgggcatccg 103
Score = 111 bits (56), Expect = 6e-023
Identities = 148/179 (82%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||||||| || ||| |||| ||||| ||||| ||||||||||| || || |||
Sbjct: 384 gacaccctcgcgcatctggacatcgggttcaaattctatgacctcaccgatgatgttcac 443
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|| || || ||||||||||||||| | ||||||||||||| |||| ||| | |||||
Sbjct: 444 ggtgtcctcggccagacctaccgctctgactacgtcaacaagctcagcgtaagcgccaac 503
Query: 922 atgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctccaccgactg 980
||||| || ||||| |||| || |||| ||||||||||| ||||||||||||||||
Sbjct: 504 atgccagtgatgggtggcgtancgagctacatctcctccgacatcttctccaccgactg 562
>gb|BF254580.2|BF254580 HVSMEf0004G18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004G18f, mRNA sequence
Length = 852
Score = 89.7 bits (45), Expect = 2e-016
Identities = 81/93 (87%)
Strand = Plus / Plus
Query: 446 gcaagcgcaacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgct 505
||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 gcaagcgcaaccccactatgagccgcgacttcacctggatccaagctctgggcatccgct 60
Query: 506 tcgcgcaccaccacctctacgtcgccgcccaga 538
|||| | |||| |||||| ||| ||||||||
Sbjct: 61 tcgctgatcaccgactctacatcggcgcccaga 93
Score = 73.8 bits (37), Expect = 1e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 801 cgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgca 860
||||| |||||| || || ||| |||||||||||||| |||||||||||||||| || ||
Sbjct: 338 cgacagcctcgcacatctggacatcggcttcaagttcgacgacctcaccgacgatgttca 397
Query: 861 cggcgtgctgggccagacctaccgcccggactacgtcaaca 901
||| || || || |||||||| ||| | ||||| |||||||
Sbjct: 398 cggtgtcctcggtcagacctatcgctctgactatgtcaaca 438
>gb|BM370613.2|BM370613 EBro08_SQ004_L22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_L22 5', mRNA sequence
Length = 538
Score = 67.9 bits (34), Expect = 7e-010
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 811 gcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctg 870
||||||||||| || | ||||||||| ||| |||||||||||||| ||||| ||| |
Sbjct: 178 gcgcacctcgagctggccttcaagtttaacgcgctcaccgacgacgtccacggtgtggtc 237
Query: 871 ggccagacctaccgcccggactacgtcaac 900
|| |||||||||||| | ||||||||||||
Sbjct: 238 ggacagacctaccgctccgactacgtcaac 267
>gb|BQ767003.1|BQ767003 EBro08_SQ007_P13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_P13 5', mRNA sequence
Length = 460
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 742 gtgcccatcaccgccgaggactcgcggatccacaactacgg 782
||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 27 gtgcccatcaccgacgaggactcccggatccacaactacgg 67
Score = 56.0 bits (28), Expect = 3e-006
Identities = 148/188 (78%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||| ||||| ||||||||||||||| ||||||||| ||| ||| || ||| || ||
Sbjct: 81 gacagcctcgtgcacctcgacctcgggttcaagttccacgcccttactaacggtgtagac 140
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|| ||||| |||||||||||| || | |||||| | | || |||| ||||| ||||
Sbjct: 141 ggtgtgctcggccagacctacagctccgactacattagcaaggtcaatgtcacggccaag 200
Query: 922 atgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctccaccgactgc 981
||||| ||||||| |||||||| | |||| ||| || ||||||||| |||||||||
Sbjct: 201 atgcctatcatgggcggcgcgcctaagtaccactcggccagcctcttctctaccgactgc 260
Query: 982 gccgtcgc 989
|| |||||
Sbjct: 261 gctgtcgc 268
>gb|BF253765.2|BF253765 HVSMEf0002B02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002B02f, mRNA sequence
Length = 875
Score = 52.0 bits (26), Expect = 4e-005
Identities = 92/114 (80%)
Strand = Plus / Plus
Query: 333 cgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaaggaccg 392
|||||| |||||| ||||| |||||||||||| ||| ||||||||| || ||||
Sbjct: 377 cgacccgcgcttcgtgggcggcgacggcaacaagttcctgttccacggccggagggacgc 436
Query: 393 ggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcgg 446
||||||||| | ||||||||||| ||| ||||| ||||||||||| |||||
Sbjct: 437 cgacttctgcctgctctccgacgccaacctgcacataaacgcgcactttatcgg 490
>gb|BQ470569.1|BQ470569 HX03F24r HX Hordeum vulgare subsp. vulgare cDNA clone HX03F24
5-PRIME, mRNA sequence
Length = 484
Score = 42.1 bits (21), Expect = 0.043
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcgg 109
|||||||||||||||||||||
Sbjct: 42 tcgtcatggcggcggcggcgg 22
>gb|AL504187.1|AL504187 AL504187 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04H16V 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 59 tcgtcatggcggcggcggcg 40
>gb|AL507327.1|AL507327 AL507327 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01O22V 5',
mRNA sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 34 tcgtcatggcggcggcggcg 15
>gb|AL507381.1|AL507381 AL507381 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05F07V 5',
mRNA sequence
Length = 512
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 39 tcgtcatggcggcggcggcg 20
>gb|BF623263.2|BF623263 HVSMEa0016C17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0016C17f, mRNA sequence
Length = 851
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 188 tcgtcatggcggcggcggcg 169
>gb|BF630809.2|BF630809 HVSMEb0014B23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0014B23f, mRNA sequence
Length = 769
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 43 tcgtcatggcggcggcggcg 24
>gb|BI953129.1|BI953129 HVSMEm0011E17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0011E17f, mRNA sequence
Length = 842
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 56 tcgtcatggcggcggcggcg 37
>gb|BI956266.1|BI956266 HVSMEn0001M12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001M12f, mRNA sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 66 tcgtcatggcggcggcggcg 47
>gb|BE601944.3|BE601944 HVSMEh0100F18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0100F18f, mRNA sequence
Length = 708
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 72 tcgtcatggcggcggcggcg 53
>gb|BQ458624.1|BQ458624 HA04K16r HA Hordeum vulgare subsp. vulgare cDNA clone HA04K16
5-PRIME, mRNA sequence
Length = 513
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 54 tcgtcatggcggcggcggcg 35
>gb|BQ471514.1|BQ471514 HV02K15r HV Hordeum vulgare subsp. vulgare cDNA clone HV02K15
5-PRIME, mRNA sequence
Length = 486
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 92 tcatggcggcggcggcggcg 111
||||||||||||||||||||
Sbjct: 98 tcatggcggcggcggcggcg 79
>gb|BQ471636.1|BQ471636 HV03A07r HV Hordeum vulgare subsp. vulgare cDNA clone HV03A07
5-PRIME, mRNA sequence
Length = 337
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 92 tcatggcggcggcggcggcg 111
||||||||||||||||||||
Sbjct: 79 tcatggcggcggcggcggcg 60
>gb|BQ472115.1|BQ472115 HV04H07r HV Hordeum vulgare subsp. vulgare cDNA clone HV04H07
5-PRIME, mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 48 tcgtcatggcggcggcggcg 29
>gb|BQ657258.1|BQ657258 HA09A16u HA Hordeum vulgare subsp. vulgare cDNA clone HA09A16
3-PRIME, mRNA sequence
Length = 512
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 tcatggcggcggcggcggcg 111
||||||||||||||||||||
Sbjct: 484 tcatggcggcggcggcggcg 503
>gb|BM442303.2|BM442303 EBan01_SQ002_M14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_M14 5', mRNA sequence
Length = 400
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 79 tcgtcatggcggcggcggcg 60
>gb|BM442548.2|BM442548 EBan01_SQ003_H21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_H21 5', mRNA sequence
Length = 425
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 27 tcgtcatggcggcggcggcg 8
>gb|BI780962.2|BI780962 EBma05_SQ001_L11_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_L11 5', mRNA sequence
Length = 422
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 27 tcgtcatggcggcggcggcg 8
>gb|BM371485.2|BM371485 EBma08_SQ002_O11_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_O11 5', mRNA sequence
Length = 545
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 44 tcgtcatggcggcggcggcg 25
>gb|BI779246.2|BI779246 EBro01_SQ003_H02_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_H02 5', mRNA sequence
Length = 559
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 48 tcgtcatggcggcggcggcg 29
>gb|BQ756755.1|BQ756755 EBem09_SQ003_K15_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ003_K15 5', mRNA sequence
Length = 92
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 27 tcgtcatggcggcggcggcg 8
>gb|BQ764606.1|BQ764606 EBca01_SQ004_J07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_J07 5', mRNA sequence
Length = 676
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 92 tcatggcggcggcggcggcg 111
||||||||||||||||||||
Sbjct: 78 tcatggcggcggcggcggcg 59
>gb|BU976780.1|BU976780 HA10E20r HA Hordeum vulgare subsp. vulgare cDNA clone HA10E20
5-PRIME, mRNA sequence
Length = 502
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 64 tcgtcatggcggcggcggcg 45
>gb|BU976941.1|BU976941 HA10J06r HA Hordeum vulgare subsp. vulgare cDNA clone HA10J06
5-PRIME, mRNA sequence
Length = 585
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 43 tcgtcatggcggcggcggcg 24
>gb|BU977004.1|BU977004 HA10K22r HA Hordeum vulgare subsp. vulgare cDNA clone HA10K22
5-PRIME, mRNA sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 43 tcgtcatggcggcggcggcg 24
>gb|BU978908.1|BU978908 HA14J19r HA Hordeum vulgare subsp. vulgare cDNA clone HA14J19
5-PRIME, mRNA sequence
Length = 552
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 58 tcgtcatggcggcggcggcg 39
>gb|BU979717.1|BU979717 HA17A17r HA Hordeum vulgare subsp. vulgare cDNA clone HA17A17
5-PRIME, mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 58 tcgtcatggcggcggcggcg 39
>gb|BU980321.1|BU980321 HA20F06r HA Hordeum vulgare subsp. vulgare cDNA clone HA20F06
5-PRIME, mRNA sequence
Length = 428
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 41 tcgtcatggcggcggcggcg 22
>gb|BU980348.1|BU980348 HA20G13r HA Hordeum vulgare subsp. vulgare cDNA clone HA20G13
5-PRIME, mRNA sequence
Length = 340
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 85 tcgtcatggcggcggcggcg 66
>gb|BU994907.1|BU994907 HM08J05r HM Hordeum vulgare subsp. vulgare cDNA clone HM08J05
5-PRIME, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 55 tcgtcatggcggcggcggcg 36
>gb|CA003964.1|CA003964 HS16C09r HS Hordeum vulgare subsp. vulgare cDNA clone HS16C09
5-PRIME, mRNA sequence
Length = 316
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcgttg 114
||||||||||||||||||||
Sbjct: 213 tggcggcggcggcggcgttg 232
>gb|CA017491.1|CA017491 HV05F22r HV Hordeum vulgare subsp. vulgare cDNA clone HV05F22
5-PRIME, mRNA sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 92 tcatggcggcggcggcggcg 111
||||||||||||||||||||
Sbjct: 98 tcatggcggcggcggcggcg 79
>gb|CA024700.1|CA024700 HZ50A24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50A24
5-PRIME, mRNA sequence
Length = 490
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 38 tcgtcatggcggcggcggcg 19
>gb|CA029021.1|CA029021 HZ63P11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63P11
5-PRIME, mRNA sequence
Length = 431
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 97 gcggcggcggcggcgttgtt 116
||||||||||||||||||||
Sbjct: 32 gcggcggcggcggcgttgtt 13
>gb|CA031146.1|CA031146 HX09C10r HX Hordeum vulgare subsp. vulgare cDNA clone HX09C10
5-PRIME, mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgtcatggcggcggcggcg 108
||||||||||||||||||||
Sbjct: 47 tcgtcatggcggcggcggcg 28
>gb|CB875740.1|CB875740 HX09D13w HX Hordeum vulgare subsp. vulgare cDNA clone HX09D13
3-PRIME, mRNA sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 96 ggcggcggcggcggcgttgt 115
||||||||||||||||||||
Sbjct: 565 ggcggcggcggcggcgttgt 546
>gb|CV054222.1|CV054222 BNEL108b11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL108b11 5' similar to Unknown
protein, mRNA sequence
Length = 608
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 97 gcggcggcggcggcgttgtt 116
||||||||||||||||||||
Sbjct: 30 gcggcggcggcggcgttgtt 11
>gb|CV055117.1|CV055117 BNEL117a4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL117a4 5' similar to DNA-directed
RNA polymerase II, putative, mRNA sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 92 tcatggcggcggcggcggcg 111
||||||||||||||||||||
Sbjct: 35 tcatggcggcggcggcggcg 16
>gb|CV055926.1|CV055926 BNEL12A2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12A2 5' similar to putative snRNP
protein, mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 92 tcatggcggcggcggcggcg 111
||||||||||||||||||||
Sbjct: 31 tcatggcggcggcggcggcg 12
>gb|CV058528.1|CV058528 BNEL39a12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL39a12 5' similar to putative
snRNP protein, mRNA sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 92 tcatggcggcggcggcggcg 111
||||||||||||||||||||
Sbjct: 31 tcatggcggcggcggcggcg 12
>gb|CV062106.1|CV062106 BNEL76d4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL76d4 5' similar to Oryza sativa,
mRNA sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 92 tcatggcggcggcggcggcg 111
||||||||||||||||||||
Sbjct: 31 tcatggcggcggcggcggcg 12
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 329,495
Number of Sequences: 312970
Number of extensions: 329495
Number of successful extensions: 124322
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124146
Number of HSP's gapped (non-prelim): 149
length of query: 1225
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1206
effective length of database: 169,188,109
effective search space: 204040859454
effective search space used: 204040859454
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)