BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9232502.2.1
(560 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF618071.3|BF618071 HVSMEc0003K24f Hordeum vulgare seedl... 200 3e-050
gb|BI959765.1|BI959765 HVSMEn0021F16f Hordeum vulgare rachi... 192 8e-048
gb|BI957520.1|BI957520 HVSMEn0009P14f Hordeum vulgare rachi... 186 5e-046
gb|BI960243.1|BI960243 HVSMEn0023O08f Hordeum vulgare rachi... 167 5e-040
gb|CA019501.1|CA019501 HV12C24r HV Hordeum vulgare subsp. v... 157 5e-037
gb|CA024360.1|CA024360 HZ49B12r HZ Hordeum vulgare subsp. v... 141 3e-032
gb|BG310062.1|BG310062 HVSMEc0016D20f Hordeum vulgare seedl... 135 2e-030
gb|BQ467896.1|BQ467896 HR01E10r HR Hordeum vulgare subsp. v... 82 2e-014
gb|BU982053.1|BU982053 HA25G06r HA Hordeum vulgare subsp. v... 56 1e-006
gb|BU995187.1|BU995187 HM09H18r HM Hordeum vulgare subsp. v... 56 1e-006
gb|BF257375.3|BF257375 HVSMEf0012L13f Hordeum vulgare seedl... 54 5e-006
gb|BU996177.1|BU996177 HM12L12r HM Hordeum vulgare subsp. v... 44 0.005
gb|BI960507.1|BI960507 HVSMEn0024N13f Hordeum vulgare rachi... 42 0.019
gb|AL450976.1|AL450976 AL450976 Hordeum vulgare Barke etiol... 38 0.30
gb|BF065743.2|BF065743 HV_CEb0013L22f Hordeum vulgare seedl... 38 0.30
gb|BG415732.2|BG415732 HVSMEk0007K04f Hordeum vulgare testa... 38 0.30
gb|BQ765055.1|BQ765055 EBca01_SQ005_M16_R carpel, pre-anthe... 38 0.30
gb|CA015472.1|CA015472 HT14G17r HT Hordeum vulgare subsp. v... 38 0.30
gb|CA026849.1|CA026849 HZ57C11r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CB882256.1|CB882256 HL01F15w HL Hordeum vulgare subsp. v... 38 0.30
gb|CB883175.1|CB883175 HQ01H03w HQ Hordeum vulgare subsp. v... 38 0.30
>gb|BF618071.3|BF618071 HVSMEc0003K24f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0003K24f, mRNA sequence
Length = 771
Score = 200 bits (101), Expect = 3e-050
Identities = 194/225 (86%)
Strand = Plus / Minus
Query: 119 gtggccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgta 178
|||||||||| | |||||| | ||||||||| ||||||||||||||||||| || |||
Sbjct: 517 gtggccggacgcttgcgtgctcaccttgccgttgagggtgccgagcatggagagcgagta 458
Query: 179 gaaccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgtt 238
||| | |||||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct: 457 gaagctcggcagcacgcagtagagcaccatctggatctgctcctgcgacgtcagcgtgtt 398
Query: 239 cagcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagccc 298
| ||| ||||| | | |||||||||||||| |||||| || | ||||||||||||
Sbjct: 397 gaaggtgccggccttgagcccgtcgaaggcggcgtcggtgggggcgaagatggtcagccc 338
Query: 299 gttgtagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 337 gttgtagctgtccgtcagctgcgcgttgatctgcgtctccacgcg 293
>gb|BI959765.1|BI959765 HVSMEn0021F16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021F16f, mRNA sequence
Length = 662
Score = 192 bits (97), Expect = 8e-048
Identities = 202/237 (85%)
Strand = Plus / Minus
Query: 107 gtagggcccgtcgtggccggacccctgcgtgttgaccttgccgctgagggtgccgagcat 166
|||||||||| ||||| |||| | |||||| | |||| |||| | ||||||||||||||
Sbjct: 567 gtagggcccggagtggcgggacgcgtgcgtgctcacctggccgttaagggtgccgagcat 508
Query: 167 ggacaggctgtagaaccggggcagcacgcagtagagcaccatctggatctgctcctgcgg 226
||| || |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggagagcgagtagaagcgcggcagcacgcagtagagcaccatctggatctgctcctgcga 448
Query: 227 cgacagcccgttcagcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccat 286
|| |||| ||| | ||| ||||| | | |||||||||||||| |||||| || |
Sbjct: 447 cgtcagcgtgttgaaggtgccggccttgagcccgtcgaaggcggcgtcggtgggggcgaa 388
Query: 287 gatggtcagcccgttgtagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 387 gatggtcagcccgttgtagctgtccgtcagctgcgcgttgatctgcgtctccacgcg 331
>gb|BI957520.1|BI957520 HVSMEn0009P14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009P14f, mRNA sequence
Length = 671
Score = 186 bits (94), Expect = 5e-046
Identities = 192/225 (85%)
Strand = Plus / Minus
Query: 119 gtggccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgta 178
||||| |||| |||||||| | ||||| ||| ||||||||||||||||| | || |||
Sbjct: 544 gtggcgggacgcctgcgtgctcaccttcccgttgagggtgccgagcatgtagagcgagta 485
Query: 179 gaaccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgtt 238
|| || |||||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct: 484 naagcgcggcagcacgcagtagagcaccatctggatctgctcctgcgacgtcagcgtgtt 425
Query: 239 cagcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagccc 298
| ||| ||||| | | |||||||||||||| |||||| || | ||||||||||||
Sbjct: 424 gaaggtgccggccttgagcccgtcgaaggcggcgtcggtgggggcgaagatggtcagccc 365
Query: 299 gttgtagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 364 gttgtagctgtccgtcagctgcgcgttgatctgcgtctccacgcg 320
>gb|BI960243.1|BI960243 HVSMEn0023O08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023O08f, mRNA sequence
Length = 492
Score = 167 bits (84), Expect = 5e-040
Identities = 147/168 (87%)
Strand = Plus / Minus
Query: 176 gtagaaccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagccc 235
|||||| || |||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 488 gtagaagcgcggcagcacgcagtagagcaccatctggatctgctcctgcgacgtcagcgt 429
Query: 236 gttcagcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcag 295
||| | ||| ||||| | | |||||||||||||| |||||| || | |||||||||
Sbjct: 428 gttgaaggtgccggccttgagcccgtcgaaggcggcgtcggtgggggcgaagatggtcag 369
Query: 296 cccgttgtagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 368 cccgttgtagctgtccgtcagctgcgcgttgatctgcgtctccacgcg 321
>gb|CA019501.1|CA019501 HV12C24r HV Hordeum vulgare subsp. vulgare cDNA clone HV12C24
5-PRIME, mRNA sequence
Length = 494
Score = 157 bits (79), Expect = 5e-037
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 189 agcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcagcacgccc 248
||||||||||||||||||||||||||||||||||||| || |||| ||| | |||
Sbjct: 494 agcacgcagtagagcaccatctggatctgctcctgcgacgtcagcgtgttgaaggtgccg 435
Query: 249 gccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgttgtagctg 308
||||| | | |||||||||||||| |||||| || | ||||||||||||||||||||||
Sbjct: 434 gccttgagcccgtcgaaggcggcgtcggtgggggcgaagatggtcagcccgttgtagctg 375
Query: 309 tccgtcagctgcgcgttgatctgcgtgtccacgcg 343
|||||||||||||||||||||||||| ||||||||
Sbjct: 374 tccgtcagctgcgcgttgatctgcgtctccacgcg 340
>gb|CA024360.1|CA024360 HZ49B12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49B12
5-PRIME, mRNA sequence
Length = 571
Score = 141 bits (71), Expect = 3e-032
Identities = 140/163 (85%)
Strand = Plus / Minus
Query: 63 gtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtgg 122
||||| |||||||||||||| | || ||||||| | ||| ||||||| ||| ||||
Sbjct: 241 gtggagacgttgacgttgttggcggagggcttgatcttgtaggtgtaggggccggagtgg 182
Query: 123 ccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaac 182
|||||| |||||||| | ||||||||| ||||||||||||||||||| || ||||||
Sbjct: 181 ccggacgcctgcgtgctcaccttgccgttgagggtgccgagcatggagagcgagtagaag 122
Query: 183 cggggcagcacgcagtagagcaccatctggatctgctcctgcg 225
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgcggcagcacgcagtagagcaccatctggatctgctcctgcg 79
Score = 56.0 bits (28), Expect = 1e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcat 49
||||| ||||||||||||||||||||||||| |||||| || |||||
Sbjct: 308 gtagacggcgagcgggaagtccttgctgacgacgctgccgaggagcat 261
>gb|BG310062.1|BG310062 HVSMEc0016D20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016D20f, mRNA sequence
Length = 823
Score = 135 bits (68), Expect = 2e-030
Identities = 143/168 (85%)
Strand = Plus / Minus
Query: 176 gtagaaccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagccc 235
|||||| || ||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct: 472 gtagaagcgcggcagcacgcagtagagcaccatgtggatctgctcctgcgacgtcagcgt 413
Query: 236 gttcagcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcag 295
||||| || ||||| | | ||||||| |||||| |||| | || | |||||||||
Sbjct: 412 gttcaaggtaccggccttgagcccgtcgaagccggcgtcggtgtgggcgaagatggtcag 353
Query: 296 cccgttgtagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 352 cccgtagtagctgtccgtcagctgcgcgttgatctgcgtctccacgcg 305
>gb|BQ467896.1|BQ467896 HR01E10r HR Hordeum vulgare subsp. vulgare cDNA clone HR01E10
5-PRIME, mRNA sequence
Length = 386
Score = 81.8 bits (41), Expect = 2e-014
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 299 gttgtagctgtccgtcagctgcgcgttgatctgcgtgtccacgcg 343
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 386 gttgtagctgtccgtcagctgcgcgttgatctgcgtctccacgcg 342
>gb|BU982053.1|BU982053 HA25G06r HA Hordeum vulgare subsp. vulgare cDNA clone HA25G06
5-PRIME, mRNA sequence
Length = 571
Score = 56.0 bits (28), Expect = 1e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcat 49
||||| ||||||||||||||||||||||||| |||||| || |||||
Sbjct: 138 gtagacggcgagcgggaagtccttgctgacgacgctgccgaggagcat 91
>gb|BU995187.1|BU995187 HM09H18r HM Hordeum vulgare subsp. vulgare cDNA clone HM09H18
5-PRIME, mRNA sequence
Length = 646
Score = 56.0 bits (28), Expect = 1e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcat 49
||||| ||||||||||||||||||||||||| |||||| || |||||
Sbjct: 96 gtagacggcgagcgggaagtccttgctgacgacgctgccgaggagcat 49
>gb|BF257375.3|BF257375 HVSMEf0012L13f Hordeum vulgare seedling root EST library
HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEf0012L13f, mRNA sequence
Length = 820
Score = 54.0 bits (27), Expect = 5e-006
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacg 32
||||| |||||||||||||||||||||||||
Sbjct: 31 gtagacggcgagcgggaagtccttgctgacg 1
>gb|BU996177.1|BU996177 HM12L12r HM Hordeum vulgare subsp. vulgare cDNA clone HM12L12
5-PRIME, mRNA sequence
Length = 577
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgc 27
||||| ||||||||||||||||||||
Sbjct: 35 gtagacggcgagcgggaagtccttgc 10
>gb|BI960507.1|BI960507 HVSMEn0024N13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024N13f, mRNA sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 425 cgccgcgcccgcgcccgagcc 445
|||||||||||||||||||||
Sbjct: 334 cgccgcgcccgcgcccgagcc 354
>gb|AL450976.1|AL450976 AL450976 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05O05u 5', mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 416 cgccgcgtccgccgcgcccgcgc 438
|||||| ||||||||||||||||
Sbjct: 306 cgccgcctccgccgcgcccgcgc 328
>gb|BF065743.2|BF065743 HV_CEb0013L22f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0013L22f, mRNA sequence
Length = 941
Score = 38.2 bits (19), Expect = 0.30
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 54 ttcacccccgtggacacgttgacgttg 80
||||| ||||||||||| |||||||||
Sbjct: 526 ttcacgcccgtggacaccttgacgttg 500
>gb|BG415732.2|BG415732 HVSMEk0007K04f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007K04f, mRNA sequence
Length = 691
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagccc 446
|||||||||||||||||| ||||
Sbjct: 89 ccgccgcgcccgcgcccgcgccc 111
>gb|BQ765055.1|BQ765055 EBca01_SQ005_M16_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_M16 5', mRNA sequence
Length = 636
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagccc 446
|||||||||||||||||| ||||
Sbjct: 67 ccgccgcgcccgcgcccgcgccc 89
>gb|CA015472.1|CA015472 HT14G17r HT Hordeum vulgare subsp. vulgare cDNA clone HT14G17
5-PRIME, mRNA sequence
Length = 650
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagccc 446
|||||||||||||||||| ||||
Sbjct: 87 ccgccgcgcccgcgcccgcgccc 109
>gb|CA026849.1|CA026849 HZ57C11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57C11
5-PRIME, mRNA sequence
Length = 526
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagccc 446
|||||||||||||||||| ||||
Sbjct: 139 ccgccgcgcccgcgcccgcgccc 161
>gb|CB882256.1|CB882256 HL01F15w HL Hordeum vulgare subsp. vulgare cDNA clone HL01F15
3-PRIME, mRNA sequence
Length = 502
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagccc 446
|||||||||||||||||| ||||
Sbjct: 142 ccgccgcgcccgcgcccgcgccc 164
>gb|CB883175.1|CB883175 HQ01H03w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01H03
3-PRIME, mRNA sequence
Length = 581
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagccc 446
|||||||||||||||||| ||||
Sbjct: 117 ccgccgcgcccgcgcccgcgccc 139
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,311
Number of Sequences: 312970
Number of extensions: 100311
Number of successful extensions: 30289
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30232
Number of HSP's gapped (non-prelim): 48
length of query: 560
length of database: 175,134,539
effective HSP length: 19
effective length of query: 541
effective length of database: 169,188,109
effective search space: 91530766969
effective search space used: 91530766969
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)