BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8636641.2.1
(1326 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM370254.2|BM370254 EBro08_SQ003_K01_R root, 3 week, dro... 242 2e-062
gb|BQ768515.1|BQ768515 EBro08_SQ011_N19_R root, 3 week, dro... 131 6e-029
gb|BE216610.2|BE216610 HV_CEb0010P06f Hordeum vulgare seedl... 78 8e-013
gb|BI959295.1|BI959295 HVSMEn0019C06f Hordeum vulgare rachi... 78 8e-013
gb|CA019377.1|CA019377 HV11M17r HV Hordeum vulgare subsp. v... 78 8e-013
gb|BI959702.1|BI959702 HVSMEn0020N23f Hordeum vulgare rachi... 74 1e-011
gb|BF625544.2|BF625544 HVSMEa0011C20f Hordeum vulgare seedl... 72 5e-011
gb|BQ765641.1|BQ765641 EBro03_SQ007_B24_R root, 3 week, wat... 70 2e-010
gb|BQ768278.1|BQ768278 EBro08_SQ011_C09_R root, 3 week, dro... 70 2e-010
gb|BI958538.1|BI958538 HVSMEn0015H22f Hordeum vulgare rachi... 68 8e-010
gb|BI779458.2|BI779458 EBro01_SQ004_B16_R root, 3 week, hyd... 68 8e-010
gb|BF260878.3|BF260878 HVSMEf0023C22f Hordeum vulgare seedl... 64 1e-008
gb|BF259479.2|BF259479 HVSMEf0019D14f Hordeum vulgare seedl... 62 5e-008
gb|AL504319.1|AL504319 AL504319 Hordeum vulgare Barke roots... 58 8e-007
gb|AL504856.1|AL504856 AL504856 Hordeum vulgare Barke roots... 58 8e-007
gb|AL507993.1|AL507993 AL507993 Hordeum vulgare Barke devel... 58 8e-007
gb|BG416384.1|BG416384 HVSMEk0011O17f Hordeum vulgare testa... 58 8e-007
gb|BM442969.2|BM442969 EBro02_SQ002_B10_R root, 3 week, hyd... 58 8e-007
gb|BM443023.2|BM443023 EBro02_SQ002_D14_R root, 3 week, hyd... 58 8e-007
gb|BQ758548.1|BQ758548 EBma07_SQ002_G06_R maternal, 21 DPA,... 58 8e-007
gb|BU985389.1|BU985389 HF06P23r HF Hordeum vulgare subsp. v... 58 8e-007
gb|CB882520.1|CB882520 HL02B17w HL Hordeum vulgare subsp. v... 58 8e-007
gb|AL503474.1|AL503474 AL503474 Hordeum vulgare Barke roots... 56 3e-006
gb|AL503641.1|AL503641 AL503641 Hordeum vulgare Barke roots... 56 3e-006
gb|BQ465796.1|BQ465796 HU04L10r HU Hordeum vulgare subsp. v... 56 3e-006
gb|BM374414.2|BM374414 EBpi03_SQ003_I23_R pistil, 4 DPA, no... 56 3e-006
gb|BU998705.1|BU998705 HI11O16r HI Hordeum vulgare subsp. v... 56 3e-006
gb|CB859888.1|CB859888 HI11O16w HI Hordeum vulgare subsp. v... 56 3e-006
gb|CK125378.1|CK125378 BES1824107n11 BES1824 Hordeum vulgar... 56 3e-006
gb|BF254185.2|BF254185 HVSMEf0003E03f Hordeum vulgare seedl... 54 1e-005
gb|BM817184.1|BM817184 HC109E09_T3.ab1 HC Hordeum vulgare s... 54 1e-005
gb|BI777214.2|BI777214 EBro03_SQ002_H09_R root, 3 week, wat... 54 1e-005
gb|BE455929.2|BE455929 HVSMEg0017J22f Hordeum vulgare pre-a... 52 5e-005
gb|BQ664493.1|BQ664493 HV03J07u HV Hordeum vulgare subsp. v... 52 5e-005
gb|BF258381.2|BF258381 HVSMEf0015J04f Hordeum vulgare seedl... 50 2e-004
gb|BI952379.1|BI952379 HVSMEm0006C12f Hordeum vulgare green... 50 2e-004
gb|BI952385.1|BI952385 HVSMEm0006C18f Hordeum vulgare green... 50 2e-004
gb|BI953803.1|BI953803 HVSMEm0014I19f Hordeum vulgare green... 50 2e-004
gb|BI954554.1|BI954554 HVSMEm0018J11f Hordeum vulgare green... 50 2e-004
gb|BE216803.1|BE216803 HV_CEb0011K04f Hordeum vulgare seedl... 50 2e-004
gb|BF263948.2|BF263948 HV_CEa0008C02f Hordeum vulgare seedl... 50 2e-004
gb|BF267910.2|BF267910 HV_CEa0019E05f Hordeum vulgare seedl... 50 2e-004
gb|BE216546.2|BE216546 HV_CEb0010M13f Hordeum vulgare seedl... 50 2e-004
gb|BE558514.2|BE558514 HV_CEb0018B07f Hordeum vulgare seedl... 50 2e-004
gb|BF258593.2|BF258593 HVSMEf0016C14f Hordeum vulgare seedl... 50 2e-004
gb|BF263468.3|BF263468 HV_CEa0006N05f Hordeum vulgare seedl... 50 2e-004
gb|BU987255.1|BU987255 HF14D21r HF Hordeum vulgare subsp. v... 50 2e-004
gb|CA019537.1|CA019537 HV12E17r HV Hordeum vulgare subsp. v... 50 2e-004
gb|CK124503.1|CK124503 BES1824109g06 BES1824 Hordeum vulgar... 50 2e-004
gb|BF260581.1|BF260581 HVSMEf0022G06f Hordeum vulgare seedl... 48 7e-004
gb|BF263830.2|BF263830 HV_CEa0007M16f Hordeum vulgare seedl... 48 7e-004
gb|BF265719.2|BF265719 HV_CEa0013C12f Hordeum vulgare seedl... 48 7e-004
gb|BF065306.2|BF065306 HV_CEb0012B07f Hordeum vulgare seedl... 48 7e-004
gb|BF065721.2|BF065721 HV_CEb0013J24f Hordeum vulgare seedl... 48 7e-004
gb|BF627564.3|BF627564 HVSMEb0005D03f Hordeum vulgare seedl... 48 7e-004
gb|BE215046.2|BE215046 HV_CEb0005K03f Hordeum vulgare seedl... 48 7e-004
gb|AV926145.1|AV926145 AV926145 K. Sato unpublished cDNA li... 48 7e-004
gb|AV926163.1|AV926163 AV926163 K. Sato unpublished cDNA li... 48 7e-004
gb|BJ448641.1|BJ448641 BJ448641 K. Sato unpublished cDNA li... 48 7e-004
gb|BJ449435.1|BJ449435 BJ449435 K. Sato unpublished cDNA li... 48 7e-004
gb|BQ766612.1|BQ766612 EBro08_SQ006_I17_R root, 3 week, dro... 48 7e-004
emb|AJ276227.1|HVU276227 Hordeum vulgare partial mRNA for p... 48 7e-004
gb|AL503882.1|AL503882 AL503882 Hordeum vulgare Barke roots... 46 0.003
gb|AL503885.1|AL503885 AL503885 Hordeum vulgare Barke roots... 46 0.003
gb|AL503918.1|AL503918 AL503918 Hordeum vulgare Barke roots... 46 0.003
gb|BF620751.2|BF620751 HVSMEc0020M03f Hordeum vulgare seedl... 46 0.003
gb|BF259360.2|BF259360 HVSMEf0019G04f Hordeum vulgare seedl... 46 0.003
gb|BF260557.2|BF260557 HVSMEf0022F06f Hordeum vulgare seedl... 46 0.003
gb|BI957348.1|BI957348 HVSMEn0009B12f Hordeum vulgare rachi... 46 0.003
gb|BI958706.1|BI958706 HVSMEn0016E19f Hordeum vulgare rachi... 46 0.003
gb|BI960099.1|BI960099 HVSMEn0023D18f Hordeum vulgare rachi... 46 0.003
gb|BF256219.3|BF256219 HVSMEf0009C16f Hordeum vulgare seedl... 46 0.003
gb|AV915449.1|AV915449 AV915449 K. Sato unpublished cDNA li... 46 0.003
gb|BQ461135.1|BQ461135 HE01C07r HE Hordeum vulgare subsp. v... 46 0.003
gb|BU995865.1|BU995865 HM11J22r HM Hordeum vulgare subsp. v... 46 0.003
gb|CA017900.1|CA017900 HV06L11r HV Hordeum vulgare subsp. v... 46 0.003
gb|CA019914.1|CA019914 HV13L06r HV Hordeum vulgare subsp. v... 46 0.003
gb|BF626036.2|BF626036 HVSMEa0015F23f Hordeum vulgare seedl... 44 0.012
gb|BF630279.2|BF630279 HVSMEb0008J07f Hordeum vulgare seedl... 44 0.012
gb|BG300276.1|BG300276 HVSMEb0011O12f Hordeum vulgare seedl... 44 0.012
gb|BF257606.2|BF257606 HVSMEf0013F09f Hordeum vulgare seedl... 44 0.012
gb|BF260448.2|BF260448 HVSMEf0022A08f Hordeum vulgare seedl... 44 0.012
gb|BI955152.1|BI955152 HVSMEm0021K08f Hordeum vulgare green... 44 0.012
gb|BI955736.1|BI955736 HVSMEm0024E14f Hordeum vulgare green... 44 0.012
gb|BE214065.1|BE214065 HV_CEb0002B16f Hordeum vulgare seedl... 44 0.012
gb|BI959359.1|BI959359 HVSMEn0019F21f Hordeum vulgare rachi... 44 0.012
gb|BI960213.1|BI960213 HVSMEn0023M03f Hordeum vulgare rachi... 44 0.012
gb|AV910283.1|AV910283 AV910283 K. Sato unpublished cDNA li... 44 0.012
gb|BQ460256.1|BQ460256 HA06M17r HA Hordeum vulgare subsp. v... 44 0.012
gb|BM377071.2|BM377071 EBem05_SQ004_A13_R embryo, 14 DPA, n... 44 0.012
gb|BM375144.2|BM375144 EBem06_SQ002_H21_R embryo, 21 DPA, n... 44 0.012
gb|BQ763726.1|BQ763726 EBro03_SQ005_B10_R root, 3 week, wat... 44 0.012
gb|BQ766536.1|BQ766536 EBro08_SQ006_J10_R root, 3 week, dro... 44 0.012
gb|CA020055.1|CA020055 HV14D07r HV Hordeum vulgare subsp. v... 44 0.012
gb|CA020728.1|CA020728 HZ37G15r HZ Hordeum vulgare subsp. v... 44 0.012
gb|BE422324.1|BE422324 HWM023cA.10r ITEC HWM Barley Leaf Li... 42 0.046
gb|AL500834.1|AL500834 AL500834 Hordeum vulgare Barke roots... 42 0.046
gb|AL501077.1|AL501077 AL501077 Hordeum vulgare Barke roots... 42 0.046
gb|AL502230.1|AL502230 AL502230 Hordeum vulgare Barke roots... 42 0.046
gb|AL503419.1|AL503419 AL503419 Hordeum vulgare Barke roots... 42 0.046
gb|AL504245.1|AL504245 AL504245 Hordeum vulgare Barke roots... 42 0.046
gb|BF256182.2|BF256182 HVSMEf0009A08f Hordeum vulgare seedl... 42 0.046
gb|BI951493.1|BI951493 HVSMEm0001B21f Hordeum vulgare green... 42 0.046
gb|BI951905.1|BI951905 HVSMEm0003K14f Hordeum vulgare green... 42 0.046
gb|BI955216.1|BI955216 HVSMEm0021O22f Hordeum vulgare green... 42 0.046
gb|BI956874.1|BI956874 HVSMEn0005M13f Hordeum vulgare rachi... 42 0.046
gb|BF267708.2|BF267708 HV_CEa0018K17f Hordeum vulgare seedl... 42 0.046
gb|BE559262.2|BE559262 HV_CEb0023E17f Hordeum vulgare seedl... 42 0.046
gb|BF255916.3|BF255916 HVSMEf0008D04f Hordeum vulgare seedl... 42 0.046
gb|BF256962.3|BF256962 HVSMEf0011H20f Hordeum vulgare seedl... 42 0.046
gb|BF265184.3|BF265184 HV_CEa0011I05f Hordeum vulgare seedl... 42 0.046
gb|AV908995.1|AV908995 AV908995 K. Sato unpublished cDNA li... 42 0.046
gb|AV909158.1|AV909158 AV909158 K. Sato unpublished cDNA li... 42 0.046
gb|AV910877.1|AV910877 AV910877 K. Sato unpublished cDNA li... 42 0.046
gb|AV911041.1|AV911041 AV911041 K. Sato unpublished cDNA li... 42 0.046
gb|AV912438.1|AV912438 AV912438 K. Sato unpublished cDNA li... 42 0.046
gb|AV928497.1|AV928497 AV928497 K. Sato unpublished cDNA li... 42 0.046
gb|AV928836.1|AV928836 AV928836 K. Sato unpublished cDNA li... 42 0.046
gb|AV930523.1|AV930523 AV930523 K. Sato unpublished cDNA li... 42 0.046
gb|AV930598.1|AV930598 AV930598 K. Sato unpublished cDNA li... 42 0.046
gb|AV931027.1|AV931027 AV931027 K. Sato unpublished cDNA li... 42 0.046
gb|AV931045.1|AV931045 AV931045 K. Sato unpublished cDNA li... 42 0.046
gb|AV931611.1|AV931611 AV931611 K. Sato unpublished cDNA li... 42 0.046
gb|BJ456364.1|BJ456364 BJ456364 K. Sato unpublished cDNA li... 42 0.046
gb|BJ456887.1|BJ456887 BJ456887 K. Sato unpublished cDNA li... 42 0.046
gb|BQ659588.1|BQ659588 HE01P17u HE Hordeum vulgare subsp. v... 42 0.046
gb|BQ661855.1|BQ661855 HP01I20w HP Hordeum vulgare subsp. v... 42 0.046
gb|BQ763802.1|BQ763802 EBro03_SQ005_O11_R root, 3 week, wat... 42 0.046
gb|BU994276.1|BU994276 HM06H06r HM Hordeum vulgare subsp. v... 42 0.046
gb|CA026596.1|CA026596 HZ56F22r HZ Hordeum vulgare subsp. v... 42 0.046
gb|BJ545250.1|BJ545250 BJ545250 K. Sato unpublished cDNA li... 42 0.046
gb|BJ546030.1|BJ546030 BJ546030 K. Sato unpublished cDNA li... 42 0.046
gb|BJ546733.1|BJ546733 BJ546733 K. Sato unpublished cDNA li... 42 0.046
gb|BJ546788.1|BJ546788 BJ546788 K. Sato unpublished cDNA li... 42 0.046
gb|CB877746.1|CB877746 HP06A12T HP Hordeum vulgare subsp. v... 42 0.046
gb|CB877757.1|CB877757 HP06A24T HP Hordeum vulgare subsp. v... 42 0.046
gb|CB878648.1|CB878648 HP09E24T HP Hordeum vulgare subsp. v... 42 0.046
gb|CB878787.1|CB878787 HP09N04T HP Hordeum vulgare subsp. v... 42 0.046
gb|CB882315.1|CB882315 HL01I08w HL Hordeum vulgare subsp. v... 42 0.046
gb|CD663051.1|CD663051 UCRHV18_04ae10_b1 Drought-stressed D... 42 0.046
gb|AL504948.1|AL504948 AL504948 Hordeum vulgare Barke roots... 40 0.18
gb|BF627946.2|BF627946 HVSMEb0006O05f Hordeum vulgare seedl... 40 0.18
gb|BF620372.2|BF620372 HVSMEc0019K08f Hordeum vulgare seedl... 40 0.18
gb|BF254984.2|BF254984 HVSMEf0005J21f Hordeum vulgare seedl... 40 0.18
gb|BF261063.2|BF261063 HVSMEf0023K15f Hordeum vulgare seedl... 40 0.18
gb|BF261118.2|BF261118 HVSMEf0023M22f Hordeum vulgare seedl... 40 0.18
gb|BI951656.1|BI951656 HVSMEm0001N08f Hordeum vulgare green... 40 0.18
gb|BI951776.1|BI951776 HVSMEm0002L16f Hordeum vulgare green... 40 0.18
gb|BI951997.1|BI951997 HVSMEm0004C12f Hordeum vulgare green... 40 0.18
gb|BI952845.1|BI952845 HVSMEm0007P04f Hordeum vulgare green... 40 0.18
gb|BI953045.1|BI953045 HVSMEm0009I14f Hordeum vulgare green... 40 0.18
gb|BI953202.1|BI953202 HVSMEm0011K02f Hordeum vulgare green... 40 0.18
gb|BI954066.1|BI954066 HVSMEm0016B04f Hordeum vulgare green... 40 0.18
gb|BI954294.1|BI954294 HVSMEm0017A16f Hordeum vulgare green... 40 0.18
gb|BI954451.1|BI954451 HVSMEm0017P19f Hordeum vulgare green... 40 0.18
gb|BI954673.1|BI954673 HVSMEm0019C12f Hordeum vulgare green... 40 0.18
gb|BI954952.1|BI954952 HVSMEm0020J16f Hordeum vulgare green... 40 0.18
gb|BI955203.1|BI955203 HVSMEm0021N22f Hordeum vulgare green... 40 0.18
gb|BI955646.1|BI955646 HVSMEm0023O09f Hordeum vulgare green... 40 0.18
gb|BI955994.1|BI955994 HVSMEm0025F01f Hordeum vulgare green... 40 0.18
gb|BI956180.1|BI956180 HVSMEm0025O19f Hordeum vulgare green... 40 0.18
gb|BE213752.1|BE213752 HV_CEb0001C19f Hordeum vulgare seedl... 40 0.18
gb|BE214929.1|BE214929 HV_CEb0005D11f Hordeum vulgare seedl... 40 0.18
gb|BE215997.1|BE215997 HV_CEb0009A21f Hordeum vulgare seedl... 40 0.18
gb|BE216352.1|BE216352 HV_CEb0010E08f Hordeum vulgare seedl... 40 0.18
gb|BE519980.1|BE519980 HV_CEb0021P01f Hordeum vulgare seedl... 40 0.18
gb|BF264384.2|BF264384 HV_CEa0009E13f Hordeum vulgare seedl... 40 0.18
gb|BF264768.2|BF264768 HV_CEa0010F03f Hordeum vulgare seedl... 40 0.18
gb|BF265004.2|BF265004 HV_CEa0010P24f Hordeum vulgare seedl... 40 0.18
gb|BF266620.2|BF266620 HV_CEa0015J22f Hordeum vulgare seedl... 40 0.18
gb|BF267576.2|BF267576 HV_CEa0018F04f Hordeum vulgare seedl... 40 0.18
gb|BE215250.2|BE215250 HV_CEb0006E13f Hordeum vulgare seedl... 40 0.18
gb|BE215675.2|BE215675 HV_CEb0007N22f Hordeum vulgare seedl... 40 0.18
gb|BF065930.2|BF065930 HV_CEb0014G05f Hordeum vulgare seedl... 40 0.18
gb|BF065954.2|BF065954 HV_CEb0014H05f Hordeum vulgare seedl... 40 0.18
gb|BE558232.2|BE558232 HV_CEb0015J02f Hordeum vulgare seedl... 40 0.18
gb|BE519974.2|BE519974 HV_CEb0021O16f Hordeum vulgare seedl... 40 0.18
gb|BF065109.2|BF065109 HV_CEb0023A20f Hordeum vulgare seedl... 40 0.18
gb|BI958759.1|BI958759 HVSMEn0016H22f Hordeum vulgare rachi... 40 0.18
gb|BF626685.3|BF626685 HVSMEb0001B05f Hordeum vulgare seedl... 40 0.18
gb|BF627973.3|BF627973 HVSMEb0002D13f Hordeum vulgare seedl... 40 0.18
gb|BF260922.3|BF260922 HVSMEf0023E18f Hordeum vulgare seedl... 40 0.18
gb|BF262977.3|BF262977 HV_CEa0005H15f Hordeum vulgare seedl... 40 0.18
gb|BF263705.3|BF263705 HV_CEa0007H04f Hordeum vulgare seedl... 40 0.18
gb|BF267330.3|BF267330 HV_CEa0017J15f Hordeum vulgare seedl... 40 0.18
gb|BF267871.3|BF267871 HV_CEa0019C10f Hordeum vulgare seedl... 40 0.18
gb|BE214775.3|BE214775 HV_CEb0004I22f Hordeum vulgare seedl... 40 0.18
gb|BE559114.2|BE559114 HV_CEb0022O20f Hordeum vulgare seedl... 40 0.18
gb|BJ466505.1|BJ466505 BJ466505 K. Sato unpublished cDNA li... 40 0.18
gb|BQ460486.1|BQ460486 HA09G22r HA Hordeum vulgare subsp. v... 40 0.18
gb|BQ468840.1|BQ468840 HM02H24r HM Hordeum vulgare subsp. v... 40 0.18
gb|BM100698.2|BM100698 EBma01_SQ005_P15_R maternal, 4 DPA, ... 40 0.18
gb|BM369932.2|BM369932 EBro08_SQ002_G03_R root, 3 week, dro... 40 0.18
gb|BM370497.2|BM370497 EBro08_SQ004_G12_R root, 3 week, dro... 40 0.18
gb|BQ764110.1|BQ764110 EBro03_SQ006_F08_R root, 3 week, wat... 40 0.18
gb|BQ765441.1|BQ765441 EBro03_SQ007_N01_R root, 3 week, wat... 40 0.18
gb|BU979090.1|BU979090 HA15C02r HA Hordeum vulgare subsp. v... 40 0.18
gb|BU994485.1|BU994485 HM07D18r HM Hordeum vulgare subsp. v... 40 0.18
gb|CA020951.1|CA020951 HZ38I21r HZ Hordeum vulgare subsp. v... 40 0.18
gb|CB876930.1|CB876930 HP02O15T HP Hordeum vulgare subsp. v... 40 0.18
gb|CB877775.1|CB877775 HP06B24T HP Hordeum vulgare subsp. v... 40 0.18
gb|CK122803.1|CK122803 BES1824106a06 BES1824 Hordeum vulgar... 40 0.18
>gb|BM370254.2|BM370254 EBro08_SQ003_K01_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_K01 5', mRNA sequence
Length = 333
Score = 242 bits (122), Expect = 2e-062
Identities = 271/318 (85%), Gaps = 2/318 (0%)
Strand = Plus / Plus
Query: 665 gggattgacccgacgctgagcaaagcctacgcatttctt-ctcaagagcatctgcccggc 723
|||||||| |||| ||||||||| || |||||| ||||| |||||| ||||||||||| |
Sbjct: 17 gggattgatccgaagctgagcaaggcgtacgcagttcttgctcaagggcatctgcccgcc 76
Query: 724 caacaccagccagttcttcccgaacacgacggtgttcatggacctcatcacgccggaaag 783
||||| || |||| ||||||| |||||| |||||||||||||||||||| ||
Sbjct: 77 caacagcaaccagacgttcccgacgacgacgaccctcatggacctcatcacgccgacgag 136
Query: 784 gtttgacaacaagtaatacgtcggcctgaccaacaacctgggcctcttcaagtcagacgt 843
||| ||||||||||| ||||| || ||||||||||||||||| | ||| |||| ||||
Sbjct: 137 gttcgacaacaagtactacgtggggctgaccaacaacctggggc-cttgcagtcggacgc 195
Query: 844 ggcgctgctgaccaacgcgacgatgaaggccctggtcgactccttcgtgcgcagcgaggc 903
|||||||||||||||||| || |||||| | |||||||||||||||||||||||||||||
Sbjct: 196 ggcgctgctgaccaacgccaccatgaagtcgctggtcgactccttcgtgcgcagcgaggc 255
Query: 904 gactttcaggaccaagtttgccaggtccatgatcaagatggggcagatcgaggtgctgac 963
| | ||| |||||| ||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct: 256 ggcgttccggaccaggttcgccaggtccatgctcaagatggggcagatcgaggtgctctc 315
Query: 964 ggggacgcagggcgagat 981
||| | |||||||||||
Sbjct: 316 cggggcacagggcgagat 333
>gb|BQ768515.1|BQ768515 EBro08_SQ011_N19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_N19 5', mRNA sequence
Length = 480
Score = 131 bits (66), Expect = 6e-029
Identities = 164/197 (83%)
Strand = Plus / Plus
Query: 665 gggattgacccgacgctgagcaaagcctacgcatttcttctcaagagcatctgcccggcc 724
|||||||| |||| ||||||||| || ||||| || | |||||| ||||||||||| ||
Sbjct: 284 gggattgatccgaagctgagcaaggcgtacgcgttcttgctcaagggcatctgcccgccc 343
Query: 725 aacaccagccagttcttcccgaacacgacggtgttcatggacctcatcacgccggaaagg 784
|||| || |||| ||||||| |||||| |||||||||||||||||||| |||
Sbjct: 344 aacagcaaccagacgttcccgacgacgacgaccctcatggacctcatcacgccgacgagg 403
Query: 785 tttgacaacaagtaatacgtcggcctgaccaacaacctgggcctcttcaagtcagacgtg 844
|| ||||||||||| ||||| || ||||||||||||||| | |||||| |||| |||| |
Sbjct: 404 ttcgacaacaagtactacgtggggctgaccaacaacctgnggctcttccagtcggacgcg 463
Query: 845 gcgctgctgaccaacgc 861
|||||||||||||||||
Sbjct: 464 gcgctgctgaccaacgc 480
Score = 85.7 bits (43), Expect = 3e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 521 ttcgcctccaagaacctcactatcgaggacctggtcgtgctctcgggcgcgcacaccatc 580
|||||| ||||||||||||| |||||||| | ||||| ||||| ||||| |||||||||
Sbjct: 164 ttcgccgccaagaacctcaccgtcgaggacatcgtcgtcctctccggcgcccacaccatc 223
Query: 581 ggcgtctcgcactgcagcggctt 603
|||||||| ||||||||| ||||
Sbjct: 224 ggcgtctcccactgcagcagctt 246
Score = 73.8 bits (37), Expect = 1e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 358 cgccgacgtgctcgccttcgcggccagggacagcgtcgtgctctccggtggcctcggcta 417
||||||||| |||||||||||||| ||||||||||||| || || || |||||||| ||
Sbjct: 1 cgccgacgtcctcgccttcgcggctcgggacagcgtcgttctgtcgggcggcctcgggta 60
Query: 418 ccaggtgcc 426
|||||||||
Sbjct: 61 ccaggtgcc 69
>gb|BE216610.2|BE216610 HV_CEb0010P06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010P06f, mRNA sequence
Length = 911
Score = 77.8 bits (39), Expect = 8e-013
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 338 tgccccggcgtggtctcctgcgccgacgtgctcgccttcgcggccagggacagcgtcgt 396
||||| ||||| ||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct: 15 tgcccaggcgtcgtctcctgcgccgacgtcctcgccatcgccgccagggacagcgtcgt 73
>gb|BI959295.1|BI959295 HVSMEn0019C06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019C06f, mRNA sequence
Length = 642
Score = 77.8 bits (39), Expect = 8e-013
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 338 tgccccggcgtggtctcctgcgccgacgtgctcgccttcgcggccagggacagcgtcgt 396
||||| ||||| ||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct: 219 tgcccaggcgtcgtctcctgcgccgacgtcctcgccatcgccgccagggacagcgtcgt 277
>gb|CA019377.1|CA019377 HV11M17r HV Hordeum vulgare subsp. vulgare cDNA clone HV11M17
5-PRIME, mRNA sequence
Length = 607
Score = 77.8 bits (39), Expect = 8e-013
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 338 tgccccggcgtggtctcctgcgccgacgtgctcgccttcgcggccagggacagcgtcgt 396
||||| ||||| ||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct: 432 tgcccaggcgtcgtctcctgcgccgacgtcctcgccatcgccgccagggacagcgtcgt 490
>gb|BI959702.1|BI959702 HVSMEn0020N23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020N23f, mRNA sequence
Length = 643
Score = 73.8 bits (37), Expect = 1e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 343 cggcgtggtctcctgcgccgacgtgctcgccttcgcggccagggacagcgtcg 395
|||||| ||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct: 405 cggcgtcgtctcctgcgccgacatcctcgccttcgccgccagggacagcgtcg 457
>gb|BF625544.2|BF625544 HVSMEa0011C20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011C20f, mRNA sequence
Length = 639
Score = 71.9 bits (36), Expect = 5e-011
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 338 tgccccggcgtggtctcctgcgccgacgtgctcgccttcgcggccagggacagcgtcgt 396
||||| ||||| | ||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct: 413 tgcccaggcgtcggctcctgcgccgacgtnctcgccatcgccgccagggacagcgtcgt 471
>gb|BQ765641.1|BQ765641 EBro03_SQ007_B24_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_B24 5', mRNA sequence
Length = 680
Score = 69.9 bits (35), Expect = 2e-010
Identities = 79/93 (84%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 177 tccgcatgcacttccatgactgctttgtcaggggctgcgatggctcggtgctgatcgaca 236
|||| ||||||||||| ||||||||||||||||| ||||| ||||| |||||| | |||
Sbjct: 261 tccggatgcacttccacgactgctttgtcaggggttgcgacggctccgtgctgctggact 320
Query: 237 cggtaggcaacctgacggcggagaaggacgcgc 269
||| | ||| ||||||||||||||||||||
Sbjct: 321 cggca---aacaagacggcggagaaggacgcgc 350
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 350 gtctcctgcgccgacgtgctcgcc 373
||||||||||||||| ||||||||
Sbjct: 428 gtctcctgcgccgacctgctcgcc 451
>gb|BQ768278.1|BQ768278 EBro08_SQ011_C09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_C09 5', mRNA sequence
Length = 541
Score = 69.9 bits (35), Expect = 2e-010
Identities = 79/93 (84%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 177 tccgcatgcacttccatgactgctttgtcaggggctgcgatggctcggtgctgatcgaca 236
|||| ||||||||||| ||||||||||||||||| ||||| ||||| |||||| | |||
Sbjct: 227 tccggatgcacttccacgactgctttgtcaggggttgcgacggctccgtgctgctggact 286
Query: 237 cggtaggcaacctgacggcggagaaggacgcgc 269
||| | ||| ||||||||||||||||||||
Sbjct: 287 cggca---aacaagacggcggagaaggacgcgc 316
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 350 gtctcctgcgccgacgtgctcgcc 373
||||||||||||||| ||||||||
Sbjct: 394 gtctcctgcgccgacctgctcgcc 417
>gb|BI958538.1|BI958538 HVSMEn0015H22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015H22f, mRNA sequence
Length = 655
Score = 67.9 bits (34), Expect = 8e-010
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 343 cggcgtggtctcctgcgccgacgtgctcgccttcgcggccagggacagcgtcg 395
|||||| |||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct: 485 cggcgtcntctcctgcgccgacatcctcgccttcgccgccagggacagcgtcg 537
>gb|BI779458.2|BI779458 EBro01_SQ004_B16_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_B16 5', mRNA sequence
Length = 611
Score = 67.9 bits (34), Expect = 8e-010
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 343 cggcgtggtctcctgcgccgacgtgctcgccttcgcggccag 384
|||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 253 cggcgtcgtctcctgcgccgacgtgctcgccttcgccgccag 294
Score = 42.1 bits (21), Expect = 0.046
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 253 ggcggagaaggacgcgccacccaac 277
|||||||||||||||||| ||||||
Sbjct: 166 ggcggagaaggacgcgccgcccaac 190
>gb|BF260878.3|BF260878 HVSMEf0023C22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023C22f, mRNA sequence
Length = 732
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 552 tggtcgtgctctcgggcgcgcacaccatcggcgtctcgcactgc 595
|||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 311 tggtcgtgctctcgggcgcgcacagcatcggccgctcgcactgc 354
>gb|BF259479.2|BF259479 HVSMEf0019D14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019D14f, mRNA sequence
Length = 574
Score = 61.9 bits (31), Expect = 5e-008
Identities = 78/93 (83%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 177 tccgcatgcacttccatgactgctttgtcaggggctgcgatggctcggtgctgatcgaca 236
|||| ||||||||||| |||||||| |||||||| ||||| || ||||||||| | |||
Sbjct: 214 tccggatgcacttccacgactgcttcgtcagggggtgcgacgggtcggtgctgctggact 273
Query: 237 cggtaggcaacctgacggcggagaaggacgcgc 269
||| | ||| ||||||||||||||||||||
Sbjct: 274 cggca---aacaagacggcggagaaggacgcgc 303
Score = 48.1 bits (24), Expect = 7e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 350 gtctcctgcgccgacgtgctcgcc 373
||||||||||||||||||||||||
Sbjct: 381 gtctcctgcgccgacgtgctcgcc 404
>gb|AL504319.1|AL504319 AL504319 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04O10V 5', mRNA sequence
Length = 700
Score = 58.0 bits (29), Expect = 8e-007
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 552 tggtcgtgctctcgggcgcgcacaccatcggcgtctcgcactgc 595
|||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 576 tggtcgtgctctcgggcgcgcacagcatcggccgntcgcactgc 619
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 187 cttccatgactgctttgtcaggggctgcgatg 218
|||||| |||||||||||| |||| |||||||
Sbjct: 206 cttccacgactgctttgtccggggttgcgatg 237
>gb|AL504856.1|AL504856 AL504856 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06J19V 5', mRNA sequence
Length = 357
Score = 58.0 bits (29), Expect = 8e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 177 tccgcatgcacttccatgactgctttgtcaggggctgcgatggctcggtgctg 229
|||| ||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 179 tccggatgcacttccacgactgcttcgtcagggggtgcgacgggtcggtgctg 231
>gb|AL507993.1|AL507993 AL507993 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07H07V 5',
mRNA sequence
Length = 607
Score = 58.0 bits (29), Expect = 8e-007
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 343 cggcgtggtctcctgcgccgacgtgctcgccttcgc 378
|||||| ||||||||||||||||||||||||||||
Sbjct: 541 cggcgtcntctcctgcgccgacgtgctcgccttcgc 576
Score = 42.1 bits (21), Expect = 0.046
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 253 ggcggagaaggacgcgccacccaac 277
|||||||||||||||||| ||||||
Sbjct: 453 ggcggagaaggacgcgccgcccaac 477
>gb|BG416384.1|BG416384 HVSMEk0011O17f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0011O17f, mRNA sequence
Length = 991
Score = 58.0 bits (29), Expect = 8e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 336 agtgccccggcgtggtctcctgcgccgacgtgctcgccttcgcggccagggacagcgtcg 395
|||| |||||||| ||||||||||||||||| |||||| |||| ||| ||| |||||||
Sbjct: 223 agtgtcccggcgtcgtctcctgcgccgacgtcctcgccgtcgccgccgaggagagcgtcg 282
Query: 396 t 396
|
Sbjct: 283 t 283
>gb|BM442969.2|BM442969 EBro02_SQ002_B10_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_B10 5', mRNA sequence
Length = 308
Score = 58.0 bits (29), Expect = 8e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 177 tccgcatgcacttccatgactgctttgtcaggggctgcgatggctcggtgctg 229
|||| ||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 210 tccggatgcacttccacgactgcttcgtcagggggtgcgacgggtcggtgctg 262
>gb|BM443023.2|BM443023 EBro02_SQ002_D14_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_D14 5', mRNA sequence
Length = 366
Score = 58.0 bits (29), Expect = 8e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 177 tccgcatgcacttccatgactgctttgtcaggggctgcgatggctcggtgctg 229
|||| ||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 232 tccggatgcacttccacgactgcttcgtcagggggtgcgacgggtcggtgctg 284
>gb|BQ758548.1|BQ758548 EBma07_SQ002_G06_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G06 5', mRNA sequence
Length = 337
Score = 58.0 bits (29), Expect = 8e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 336 agtgccccggcgtggtctcctgcgccgacgtgctcgccttcgcggccagggacagcgtcg 395
|||| |||||||| ||||||||||||||||| |||||| |||| ||| ||| |||||||
Sbjct: 1 agtgtcccggcgtcgtctcctgcgccgacgtcctcgccgtcgccgccgaggagagcgtcg 60
Query: 396 t 396
|
Sbjct: 61 t 61
>gb|BU985389.1|BU985389 HF06P23r HF Hordeum vulgare subsp. vulgare cDNA clone HF06P23
5-PRIME, mRNA sequence
Length = 430
Score = 58.0 bits (29), Expect = 8e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 336 agtgccccggcgtggtctcctgcgccgacgtgctcgccttcgcggccagggacagcgtcg 395
|||| |||||||| ||||||||||||||||| |||||| |||| ||| ||| |||||||
Sbjct: 182 agtgtcccggcgtcgtctcctgcgccgacgtcctcgccgtcgccgccgaggagagcgtcg 241
Query: 396 t 396
|
Sbjct: 242 t 242
>gb|CB882520.1|CB882520 HL02B17w HL Hordeum vulgare subsp. vulgare cDNA clone HL02B17
3-PRIME, mRNA sequence
Length = 623
Score = 58.0 bits (29), Expect = 8e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 336 agtgccccggcgtggtctcctgcgccgacgtgctcgccttcgcggccagggacagcgtcg 395
|||| |||||||| ||||||||||||||||| |||||| |||| ||| ||| |||||||
Sbjct: 18 agtgtcccggcgtcgtctcctgcgccgacgtcctcgccgtcgccgccgaggagagcgtcg 77
Query: 396 t 396
|
Sbjct: 78 t 78
>gb|AL503474.1|AL503474 AL503474 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02E09T 5', mRNA sequence
Length = 700
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 556 cgtgctctcgggcgcgcacaccatcggcgtctcgcactgc 595
|||||||||||||||||||| ||||||| ||||||||||
Sbjct: 612 cgtgctctcgggcgcgcacagcatcggccgctcgcactgc 651
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 187 cttccatgactgctttgtcaggggctgcgatg 218
|||||| |||||||||||| |||| |||||||
Sbjct: 235 cttccacgactgctttgtccggggttgcgatg 266
>gb|AL503641.1|AL503641 AL503641 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02O14T 5', mRNA sequence
Length = 700
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 556 cgtgctctcgggcgcgcacaccatcggcgtctcgcactgc 595
|||||||||||||||||||| ||||||| ||||||||||
Sbjct: 591 cgtgctctcgggcgcgcacagcatcggccgctcgcactgc 630
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 187 cttccatgactgctttgtcaggggctgcgatg 218
|||||| |||||||||||| |||| |||||||
Sbjct: 215 cttccacgactgctttgtccggggttgcgatg 246
>gb|BQ465796.1|BQ465796 HU04L10r HU Hordeum vulgare subsp. vulgare cDNA clone HU04L10
5-PRIME, mRNA sequence
Length = 567
Score = 56.0 bits (28), Expect = 3e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 548 gacctggtcgtgctctcgggcgcgcacaccatcggcgtctcgcactgc 595
||||| || |||||||| |||||||||||||||||||| || ||||||
Sbjct: 412 gacctcgtggtgctctccggcgcgcacaccatcggcgtgtcacactgc 459
>gb|BM374414.2|BM374414 EBpi03_SQ003_I23_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_I23 5', mRNA sequence
Length = 391
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 552 tggtcgtgctctcgggcgcgcacaccatcggcgtctcgcactgc 595
|||||| ||||||||||||||||||| ||||| |||| ||||||
Sbjct: 42 tggtcgcgctctcgggcgcgcacaccgtcggcttctcccactgc 85
>gb|BU998705.1|BU998705 HI11O16r HI Hordeum vulgare subsp. vulgare cDNA clone HI11O16
5-PRIME, mRNA sequence
Length = 657
Score = 56.0 bits (28), Expect = 3e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 548 gacctggtcgtgctctcgggcgcgcacaccatcggc 583
||||| |||| |||||||||||||||||||||||||
Sbjct: 262 gacctcgtcgcgctctcgggcgcgcacaccatcggc 297
>gb|CB859888.1|CB859888 HI11O16w HI Hordeum vulgare subsp. vulgare cDNA clone HI11O16
3-PRIME, mRNA sequence
Length = 647
Score = 56.0 bits (28), Expect = 3e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 548 gacctggtcgtgctctcgggcgcgcacaccatcggc 583
||||| |||| |||||||||||||||||||||||||
Sbjct: 639 gacctcgtcgcgctctcgggcgcgcacaccatcggc 604
>gb|CK125378.1|CK125378 BES1824107n11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N117 5-PRIME, mRNA sequence
Length = 738
Score = 56.0 bits (28), Expect = 3e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 548 gacctggtcgtgctctcgggcgcgcacaccatcggc 583
||||| |||| |||||||||||||||||||||||||
Sbjct: 495 gacctcgtcgcgctctcgggcgcgcacaccatcggc 530
>gb|BF254185.2|BF254185 HVSMEf0003E03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003E03f, mRNA sequence
Length = 529
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 336 agtgccccggcgtggtctcctgcgccgacgtgctcgccttcgc 378
|||| |||||||| ||||||||||||||||| |||||| ||||
Sbjct: 381 agtgtcccggcgtcgtctcctgcgccgacgtcctcgccgtcgc 423
>gb|BM817184.1|BM817184 HC109E09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109E09_T3.ab1 similar to Peroxidase,, mRNA sequence
Length = 864
Score = 54.0 bits (27), Expect = 1e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 544 cgaggacctggtcgtgctctcgggcgcgcacaccatcgg 582
||||||||||||| | ||||| |||||||||||||||||
Sbjct: 672 cgaggacctggtcatcctctccggcgcgcacaccatcgg 710
>gb|BI777214.2|BI777214 EBro03_SQ002_H09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_H09 5', mRNA sequence
Length = 324
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcga 216
|||||||||||||||||||| |||||||| |||||
Sbjct: 275 atgcacttccatgactgcttcgtcagggggtgcga 309
>gb|BE455929.2|BE455929 HVSMEg0017J22f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017J22f, mRNA sequence
Length = 802
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgcactgca 596
|||||| || ||||||||||||||| ||||||||||||
Sbjct: 329 gctctcaggggcgcacaccatcggcatctcgcactgca 366
>gb|BQ664493.1|BQ664493 HV03J07u HV Hordeum vulgare subsp. vulgare cDNA clone HV03J07
3-PRIME, mRNA sequence
Length = 506
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 338 tgccccggcgtggtctcctgcgccgacgtgctcgccttcgcggcca 383
||||||||||| ||||||||||||||| | |||||| |||| ||||
Sbjct: 335 tgccccggcgtcgtctcctgcgccgacatactcgccatcgccgcca 290
>gb|BF258381.2|BF258381 HVSMEf0015J04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015J04f, mRNA sequence
Length = 749
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 338 tgccccggcgtggtctcctgcgccgacgtgctc 370
||||||||| | |||||||||||||||||||||
Sbjct: 392 tgccccggcatcgtctcctgcgccgacgtgctc 424
>gb|BI952379.1|BI952379 HVSMEm0006C12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0006C12f, mRNA sequence
Length = 813
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgca 591
|||||| |||||||||||||||||| |||||||
Sbjct: 482 gctctccggcgcgcacaccatcggcttctcgca 514
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 108 cacttccatgactgctttgt 127
>gb|BI952385.1|BI952385 HVSMEm0006C18f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0006C18f, mRNA sequence
Length = 874
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgca 591
|||||| |||||||||||||||||| |||||||
Sbjct: 482 gctctccggcgcgcacaccatcggcttctcgca 514
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 108 cacttccatgactgctttgt 127
>gb|BI953803.1|BI953803 HVSMEm0014I19f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0014I19f, mRNA sequence
Length = 639
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgca 591
|||||| |||||||||||||||||| |||||||
Sbjct: 26 gctctccggcgcgcacaccatcggcttctcgca 58
Score = 42.1 bits (21), Expect = 0.046
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 978 agatcaggcgcaactgcagggtcatcaac 1006
|||| |||||||||||||||||| |||||
Sbjct: 394 agattaggcgcaactgcagggtcgtcaac 422
>gb|BI954554.1|BI954554 HVSMEm0018J11f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0018J11f, mRNA sequence
Length = 658
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgca 591
|||||| |||||||||||||||||| |||||||
Sbjct: 605 gctctccggcgcgcacaccatcggcttctcgca 637
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 231 cacttccatgactgctttgt 250
>gb|BE216803.1|BE216803 HV_CEb0011K04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011K04f, mRNA sequence
Length = 730
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgca 591
|||||| |||||||||||||||||| |||||||
Sbjct: 618 gctctccggcgcgcacaccatcggcttctcgca 650
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 244 cacttccatgactgctttgt 263
>gb|BF263948.2|BF263948 HV_CEa0008C02f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0008C02f, mRNA sequence
Length = 443
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgca 591
|||||| |||||||||||||||||| |||||||
Sbjct: 54 gctctccggcgcgcacaccatcggcttctcgca 86
>gb|BF267910.2|BF267910 HV_CEa0019E05f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0019E05f, mRNA sequence
Length = 803
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgca 591
|||||| |||||||||||||||||| |||||||
Sbjct: 605 gctctccggcgcgcacaccatcggcttctcgca 637
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 231 cacttccatgactgctttgt 250
>gb|BE216546.2|BE216546 HV_CEb0010M13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010M13f, mRNA sequence
Length = 695
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgca 591
|||||| |||||||||||||||||| |||||||
Sbjct: 600 gctctccggcgcgcacaccatcggcttctcgca 632
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 225 cacttccatgactgctttgt 244
>gb|BE558514.2|BE558514 HV_CEb0018B07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0018B07f, mRNA sequence
Length = 698
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgca 591
|||||| |||||||||||||||||| |||||||
Sbjct: 598 gctctccggcgcgcacaccatcggcttctcgca 630
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 224 cacttccatgactgctttgt 243
>gb|BF258593.2|BF258593 HVSMEf0016C14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016C14f, mRNA sequence
Length = 888
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 338 tgccccggcgtggtctcctgcgccgacgtgctcgccttcgcggcc 382
||||| ||||| ||||||||||||||| | ||||||||||||||
Sbjct: 248 tgccctggcgtcgtctcctgcgccgacatcgtcgccttcgcggcc 292
>gb|BF263468.3|BF263468 HV_CEa0006N05f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006N05f, mRNA sequence
Length = 829
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 559 gctctcgggcgcgcacaccatcggcgtctcgca 591
|||||| |||||||||||||||||| |||||||
Sbjct: 469 gctctccggcgcgcacaccatcggcttctcgca 501
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 95 cacttccatgactgctttgt 114
>gb|BU987255.1|BU987255 HF14D21r HF Hordeum vulgare subsp. vulgare cDNA clone HF14D21
5-PRIME, mRNA sequence
Length = 550
Score = 50.1 bits (25), Expect = 2e-004
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 183 tgcacttccatgactgctttgtcaggggctgcgatggctcggtgctgatcgacacggtag 242
|||||||||| ||||| ||||||| ||| || || ||||| || ||||||||| || ||
Sbjct: 206 tgcacttccacgactgttttgtcaagggttgtgacggctcagtcctgatcgactcgacag 265
Query: 243 gcaacctgacggcggagaaggacgcgccacccaacaaccccagcctccg 291
||| || || ||||| |||||||| |||||||| |||||||||||
Sbjct: 266 caaacaacactgctgagaaagacgcgccccccaacaagcccagcctccg 314
>gb|CA019537.1|CA019537 HV12E17r HV Hordeum vulgare subsp. vulgare cDNA clone HV12E17
5-PRIME, mRNA sequence
Length = 561
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgtcaggggctgcgatggctcggtgctg 229
||||||||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 163 cacttccatgattgcttcgtcaggggttgcgatggatcagtgctg 207
>gb|CK124503.1|CK124503 BES1824109g06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G069 5-PRIME, mRNA sequence
Length = 775
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 546 aggacctggtcgtgctctcgggcgcgcacaccatcgg 582
||||||| ||| | |||||||||||||||||||||||
Sbjct: 356 aggacctcgtcatcctctcgggcgcgcacaccatcgg 392
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 338 tgccccggcgtggtctcctgcgccgac 364
||||||||||| |||||||||||||||
Sbjct: 145 tgccccggcgtcgtctcctgcgccgac 171
>gb|BF260581.1|BF260581 HVSMEf0022G06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022G06f, mRNA sequence
Length = 836
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 545 gaggacctggtcgtgctctcgggcgcgcacac 576
|||||||||||||| ||||| |||||||||||
Sbjct: 60 gaggacctggtcgtcctctccggcgcgcacac 91
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,116
Number of Sequences: 312970
Number of extensions: 156116
Number of successful extensions: 45036
Number of sequences better than 0.5: 202
Number of HSP's better than 0.5 without gapping: 196
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 44562
Number of HSP's gapped (non-prelim): 473
length of query: 1326
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1307
effective length of database: 169,188,109
effective search space: 221128858463
effective search space used: 221128858463
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)