BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8612115.2.1
(1078 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF267787.2|BF267787 HV_CEa0018O07f Hordeum vulgare seedl... 201 5e-050
gb|BQ762605.1|BQ762605 EBro02_SQ004_N09 _R root, 3 week, hy... 201 5e-050
gb|BQ762734.1|BQ762734 EBro02_SQ004_L21_R root, 3 week, hyd... 201 5e-050
gb|BQ764132.1|BQ764132 EBro03_SQ006_I12_R root, 3 week, wat... 201 5e-050
gb|CB877860.1|CB877860 HP06H01T HP Hordeum vulgare subsp. v... 201 5e-050
gb|CB878248.1|CB878248 HP07N14T HP Hordeum vulgare subsp. v... 201 5e-050
gb|BF262553.2|BF262553 HV_CEa0004F01f Hordeum vulgare seedl... 193 1e-047
gb|BQ768001.1|BQ768001 EBro08_SQ010_M09_R root, 3 week, dro... 193 1e-047
gb|BI952990.1|BI952990 HVSMEm0008P06f Hordeum vulgare green... 187 7e-046
gb|CB879431.1|CB879431 HP02D14w HP Hordeum vulgare subsp. v... 147 7e-034
gb|BM443361.2|BM443361 EBro02_SQ003_M08_R root, 3 week, hyd... 131 4e-029
gb|BF631287.2|BF631287 HVSMEb0015I04f Hordeum vulgare seedl... 119 2e-025
gb|BM371207.2|BM371207 EBro04_SQ003_N15_R root, 3 week, sal... 119 2e-025
gb|BI952762.1|BI952762 HVSMEm0007K18f Hordeum vulgare green... 111 4e-023
gb|CB876733.1|CB876733 HP02D14T HP Hordeum vulgare subsp. v... 103 1e-020
gb|AL450587.1|AL450587 AL450587 Hordeum vulgare Barke etiol... 94 1e-017
gb|CD663007.1|CD663007 UCRHV18_03dh04_b1 Drought-stressed D... 50 1e-004
gb|AL504101.1|AL504101 AL504101 Hordeum vulgare Barke roots... 48 6e-004
gb|AL505584.1|AL505584 AL505584 Hordeum vulgare Barke roots... 48 6e-004
gb|BF257596.2|BF257596 HVSMEf0013E23f Hordeum vulgare seedl... 48 6e-004
gb|BG365477.2|BG365477 HVSMEi0002N15f Hordeum vulgare 20 DA... 48 6e-004
gb|BG369379.2|BG369379 HVSMEi0024C18f Hordeum vulgare 20 DA... 48 6e-004
gb|BQ471515.1|BQ471515 HV02K17r HV Hordeum vulgare subsp. v... 48 6e-004
gb|BQ471902.1|BQ471902 HV03N04r HV Hordeum vulgare subsp. v... 48 6e-004
gb|BM371947.2|BM371947 EBma08_SQ004_H18_R maternal, 28 DPA,... 48 6e-004
gb|CA018087.1|CA018087 HV07G18r HV Hordeum vulgare subsp. v... 48 6e-004
gb|CB877554.1|CB877554 HP05F18T HP Hordeum vulgare subsp. v... 48 6e-004
gb|BF616876.2|BF616876 HVSMEc0013E22f Hordeum vulgare seedl... 44 0.009
gb|BI956552.1|BI956552 HVSMEn0004B19f Hordeum vulgare rachi... 44 0.009
gb|BQ458856.1|BQ458856 HA04A06r HA Hordeum vulgare subsp. v... 44 0.009
gb|BQ458946.1|BQ458946 HA02L24r HA Hordeum vulgare subsp. v... 44 0.009
gb|BQ656572.1|BQ656572 HA04A06u HA Hordeum vulgare subsp. v... 44 0.009
gb|BQ656628.1|BQ656628 HA02L24u HA Hordeum vulgare subsp. v... 44 0.009
gb|BU973947.1|BU973947 HB26H05r BC Hordeum vulgare subsp. v... 44 0.009
gb|BU973958.1|BU973958 HB26H17r BC Hordeum vulgare subsp. v... 44 0.009
gb|BU976364.1|BU976364 HA03J12r HA Hordeum vulgare subsp. v... 44 0.009
gb|BU976365.1|BU976365 HA03J12u HA Hordeum vulgare subsp. v... 44 0.009
gb|BU982796.1|BU982796 HA27K05r HA Hordeum vulgare subsp. v... 44 0.009
gb|BU999259.1|BU999259 HI13O24r HI Hordeum vulgare subsp. v... 44 0.009
gb|CV062113.1|CV062113 BNEL76e10 Barley EST endosperm libra... 44 0.009
gb|CD662403.1|CD662403 UCRHV18_02ac05_b1 Drought-stressed D... 42 0.035
gb|AL508981.1|AL508981 AL508981 Hordeum vulgare Barke devel... 40 0.14
gb|BF624753.2|BF624753 HVSMEa0017K10f Hordeum vulgare seedl... 40 0.14
gb|BG368670.1|BG368670 HVSMEi0020C19f Hordeum vulgare 20 DA... 40 0.14
gb|BI780772.2|BI780772 EBes01_SQ002_C13_R embryo sac, 4-6 D... 40 0.14
gb|BM099403.2|BM099403 EBes01_SQ003_C11_R embryo sac, 4-6 D... 40 0.14
gb|BM099496.2|BM099496 EBes01_SQ003_G17_R embryo sac, 4-6 D... 40 0.14
gb|BI776880.2|BI776880 EBpi03_SQ001_D20_R pistil, 4 DPA, no... 40 0.14
gb|BU983832.1|BU983832 HA31C22r HA Hordeum vulgare subsp. v... 40 0.14
gb|CB879522.1|CB879522 HP02J03w HP Hordeum vulgare subsp. v... 40 0.14
gb|CK122763.1|CK122763 BES1824105l04 BES1824 Hordeum vulgar... 40 0.14
gb|CK123301.1|CK123301 BES1824103d15 BES1824 Hordeum vulgar... 40 0.14
>gb|BF267787.2|BF267787 HV_CEa0018O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018O07f, mRNA sequence
Length = 828
Score = 201 bits (101), Expect = 5e-050
Identities = 224/265 (84%), Gaps = 4/265 (1%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| ||||||| ||||||||||||||||||||||||||||| | | ||| ||| | ||||
Sbjct: 103 gcggcatcgcgatctactggggccagaacggcaacgagggcacgctggctcaggcgtgcg 162
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct: 163 cgacggggaactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaga 222
Query: 153 cgccggcgcttaacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcg 209
|||| ||| |||||||| |||||||||||||| |||| | |||| |||||| ||
Sbjct: 223 agccgctgctgaacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcg 282
Query: 210 tgggcgcggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcg 269
||||||| ||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct: 283 tgggcgccgacgtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcg 342
Query: 270 ggggcgtcggcagctacgggctctc 294
| ||||||||||||||||| |||||
Sbjct: 343 gcggcgtcggcagctacggcctctc 367
>gb|BQ762605.1|BQ762605 EBro02_SQ004_N09 _R root, 3 week, hydroponic grown, low nitrogen,
cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA
clone EBro02_SQ004_N09 5', mRNA sequence
Length = 670
Score = 201 bits (101), Expect = 5e-050
Identities = 224/265 (84%), Gaps = 4/265 (1%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| ||||||| ||||||||||||||||||||||||||||| | | ||| ||| | ||||
Sbjct: 105 gcggcatcgcgatctactggggccagaacggcaacgagggcacgctggctcaggcgtgcg 164
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct: 165 cgacggggaactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaga 224
Query: 153 cgccggcgcttaacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcg 209
|||| ||| |||||||| |||||||||||||| |||| | |||| |||||| ||
Sbjct: 225 agccgctgctgaacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcg 284
Query: 210 tgggcgcggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcg 269
||||||| ||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct: 285 tgggcgccgacgtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcg 344
Query: 270 ggggcgtcggcagctacgggctctc 294
| ||||||||||||||||| |||||
Sbjct: 345 gcggcgtcggcagctacggcctctc 369
Score = 107 bits (54), Expect = 6e-022
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 446 ctcggcgacgccgtgctcgacggcgtcgacttcgacatcgagagcggcgggagcgcgcac 505
Query: 450 tgggacgacctggc 463
||||||||||||||
Sbjct: 506 tgggacgacctggc 519
Score = 62.1 bits (31), Expect = 4e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 565 cgcgctcgccacggggctgttcgactacgtgtgggtgcagttc 607
|||||||| ||||||| || |||||||||||||||||||||||
Sbjct: 628 cgcgctcggcacggggttgctcgactacgtgtgggtgcagttc 670
Score = 60.1 bits (30), Expect = 1e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 524 gctgcgccgcagtgcccgttcccggacgcg 553
||||||||||||||||||||||||||||||
Sbjct: 578 gctgcgccgcagtgcccgttcccggacgcg 607
>gb|BQ762734.1|BQ762734 EBro02_SQ004_L21_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_L21 5', mRNA sequence
Length = 629
Score = 201 bits (101), Expect = 5e-050
Identities = 224/265 (84%), Gaps = 4/265 (1%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| ||||||| ||||||||||||||||||||||||||||| | | ||| ||| | ||||
Sbjct: 101 gcggcatcgcgatctactggggccagaacggcaacgagggcacgctggctcaggcgtgcg 160
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct: 161 cgacggggaactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaga 220
Query: 153 cgccggcgcttaacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcg 209
|||| ||| |||||||| |||||||||||||| |||| | |||| |||||| ||
Sbjct: 221 agccgctgctgaacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcg 280
Query: 210 tgggcgcggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcg 269
||||||| ||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct: 281 tgggcgccgacgtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcg 340
Query: 270 ggggcgtcggcagctacgggctctc 294
| ||||||||||||||||| |||||
Sbjct: 341 gcggcgtcggcagctacggcctctc 365
Score = 107 bits (54), Expect = 6e-022
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 442 ctcggcgacgccgtgctcgacggcgtcgacttcgacatcgagagcggcgggagcgcgcac 501
Query: 450 tgggacgacctggc 463
||||||||||||||
Sbjct: 502 tgggacgacctggc 515
Score = 60.1 bits (30), Expect = 1e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 524 gctgcgccgcagtgcccgttcccggacgcg 553
||||||||||||||||||||||||||||||
Sbjct: 574 gctgcgccgcagtgcccgttcccggacgcg 603
>gb|BQ764132.1|BQ764132 EBro03_SQ006_I12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_I12 5', mRNA sequence
Length = 537
Score = 201 bits (101), Expect = 5e-050
Identities = 224/265 (84%), Gaps = 4/265 (1%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| ||||||| ||||||||||||||||||||||||||||| | | ||| ||| | ||||
Sbjct: 98 gcggcatcgcgatctactggggccagaacggcaacgagggcacgctggctcaggcgtgcg 157
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct: 158 cgacggggaactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaga 217
Query: 153 cgccggcgcttaacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcg 209
|||| ||| |||||||| |||||||||||||| |||| | |||| |||||| ||
Sbjct: 218 agccgctgctgaacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcg 277
Query: 210 tgggcgcggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcg 269
||||||| ||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct: 278 tgggcgccgacgtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcg 337
Query: 270 ggggcgtcggcagctacgggctctc 294
| ||||||||||||||||| |||||
Sbjct: 338 gcggcgtcggcagctacggcctctc 362
Score = 101 bits (51), Expect = 4e-020
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||| |||||||||||||||||||||||| ||||||||||| || | ||
Sbjct: 439 ctcggcgacgccgtgctcgacggcgtcgacttcgacatcnagagcggcgggagcgcgcac 498
Query: 450 tgggacgacctggc 463
||||||||||||||
Sbjct: 499 tgggacgacctggc 512
>gb|CB877860.1|CB877860 HP06H01T HP Hordeum vulgare subsp. vulgare cDNA clone HP06H01
5-PRIME, mRNA sequence
Length = 509
Score = 201 bits (101), Expect = 5e-050
Identities = 224/265 (84%), Gaps = 4/265 (1%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| ||||||| ||||||||||||||||||||||||||||| | | ||| ||| | ||||
Sbjct: 82 gcggcatcgcgatctactggggccagaacggcaacgagggcacgctggctcaggcgtgcg 141
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct: 142 cgacggggaactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaga 201
Query: 153 cgccggcgcttaacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcg 209
|||| ||| |||||||| |||||||||||||| |||| | |||| |||||| ||
Sbjct: 202 agccgctgctgaacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcg 261
Query: 210 tgggcgcggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcg 269
||||||| ||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct: 262 tgggcgccgacgtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcg 321
Query: 270 ggggcgtcggcagctacgggctctc 294
| ||||||||||||||||| |||||
Sbjct: 322 gcggcgtcggcagctacggcctctc 346
Score = 107 bits (54), Expect = 6e-022
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 423 ctcggcgacgccgtgctcgacggcgtcgacttcgacatcgagagcggcgggagcgcgcac 482
Query: 450 tgggacgacctggc 463
||||||||||||||
Sbjct: 483 tgggacgacctggc 496
>gb|CB878248.1|CB878248 HP07N14T HP Hordeum vulgare subsp. vulgare cDNA clone HP07N14
5-PRIME, mRNA sequence
Length = 506
Score = 201 bits (101), Expect = 5e-050
Identities = 224/265 (84%), Gaps = 4/265 (1%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| ||||||| ||||||||||||||||||||||||||||| | | ||| ||| | ||||
Sbjct: 82 gcggcatcgcgatctactggggccagaacggcaacgagggcacgctggctcaggcgtgcg 141
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct: 142 cgacggggaactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaga 201
Query: 153 cgccggcgcttaacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcg 209
|||| ||| |||||||| |||||||||||||| |||| | |||| |||||| ||
Sbjct: 202 agccgctgctgaacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcg 261
Query: 210 tgggcgcggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcg 269
||||||| ||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct: 262 tgggcgccgacgtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcg 321
Query: 270 ggggcgtcggcagctacgggctctc 294
| ||||||||||||||||| |||||
Sbjct: 322 gcggcgtcggcagctacggcctctc 346
Score = 107 bits (54), Expect = 6e-022
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 423 ctcggcgacgccgtgctcgacggcgtcgacttcgacatcgagagcggcgggagcgcgcac 482
Query: 450 tgggacgacctggc 463
||||||||||||||
Sbjct: 483 tgggacgacctggc 496
>gb|BF262553.2|BF262553 HV_CEa0004F01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004F01f, mRNA sequence
Length = 843
Score = 193 bits (97), Expect = 1e-047
Identities = 223/265 (84%), Gaps = 4/265 (1%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| |||| || ||||||||||||||||||||||||||||| | | ||| ||| | ||||
Sbjct: 92 gcggcatagcgatctactggggccagaacggcaacgagggcacgctggctcaggcgtgcg 151
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct: 152 cgacggggaactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaga 211
Query: 153 cgccggcgcttaacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcg 209
|||| ||| |||||||| |||||||||||||| |||| | |||| |||||| ||
Sbjct: 212 agccgctgctgaacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcg 271
Query: 210 tgggcgcggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcg 269
||||||| ||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct: 272 tgggcgccgacgtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcg 331
Query: 270 ggggcgtcggcagctacgggctctc 294
| ||||||||||||||||| |||||
Sbjct: 332 gcggcgtcggcagctacggcctctc 356
Score = 107 bits (54), Expect = 6e-022
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 433 ctcggcgacgccgtgctcgacggcgtcgacttcgacatcgagagcggcgggagcgcgcac 492
Query: 450 tgggacgacctggc 463
||||||||||||||
Sbjct: 493 tgggacgacctggc 506
Score = 84.0 bits (42), Expect = 1e-014
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 575 acggggctgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtaca 632
||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 625 acggggctgttggactacgtgtgggtgcagttttacaacaacccggcgtgccattaca 682
Score = 52.2 bits (26), Expect = 4e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 524 gctgcgccgcagtgcccgttcccggacgcg 553
||||||||||||||||| ||||||||||||
Sbjct: 565 gctgcgccgcagtgcccattcccggacgcg 594
>gb|BQ768001.1|BQ768001 EBro08_SQ010_M09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_M09 5', mRNA sequence
Length = 440
Score = 193 bits (97), Expect = 1e-047
Identities = 223/265 (84%), Gaps = 4/265 (1%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| ||||||| ||||||||||||||||||||||||||||| | | ||| || | ||||
Sbjct: 98 gcggcatcgcgatctactggggccagaacggcaacgagggcacgctggctcaagcgtgcg 157
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct: 158 cgacggggaactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaga 217
Query: 153 cgccggcgcttaacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcg 209
|||| ||| |||||||| |||||||||||||| |||| | |||| |||||| ||
Sbjct: 218 agccgctgctgaacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcg 277
Query: 210 tgggcgcggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcg 269
||||||| ||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct: 278 tgggcgccgacgtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcg 337
Query: 270 ggggcgtcggcagctacgggctctc 294
| ||||||||||||||||| |||||
Sbjct: 338 gcggcgtcggcagctacggcctctc 362
>gb|BI952990.1|BI952990 HVSMEm0008P06f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0008P06f, mRNA sequence
Length = 787
Score = 187 bits (94), Expect = 7e-046
Identities = 222/265 (83%), Gaps = 4/265 (1%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| ||||||| ||||||||||||||||||||||||||||| | | ||| || | ||||
Sbjct: 99 gcggcatcgcgatctactggggccagaacggcaacgagggcacgctggctcangcgtgcg 158
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| |||||| |||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct: 159 cgacgggggactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaga 218
Query: 153 cgccggcgcttaacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcg 209
|||| ||| |||||||| |||||||||||||| |||| | |||| |||||| ||
Sbjct: 219 agccgctgctgaacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcg 278
Query: 210 tgggcgcggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcg 269
||||||| ||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct: 279 tgggcgccgacgtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcg 338
Query: 270 ggggcgtcggcagctacgggctctc 294
| ||||||||||||||||| |||||
Sbjct: 339 gcggcgtcggcagctacggcctctc 363
Score = 107 bits (54), Expect = 6e-022
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 440 ctcggcgacgccgtgctcgacggcgtcgacttcgacatcgagagcggcgggagcgcgcac 499
Query: 450 tgggacgacctggc 463
||||||||||||||
Sbjct: 500 tgggacgacctggc 513
Score = 103 bits (52), Expect = 1e-020
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 565 cgcgctcgccacggggctgttcgactacgtgtgggtgcagttctacaacaacccgccgtg 624
|||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 622 cgcgctcgggacggggctggtccactacgtgtgggtgcagttctacaacaacccgccgtg 681
Query: 625 ccagtaca 632
||||||||
Sbjct: 682 ccagtaca 689
Score = 52.2 bits (26), Expect = 4e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 524 gctgcgccgcagtgcccgttcccggacgcg 553
||||||||||||||||| ||||||||||||
Sbjct: 572 gctgcgccgcagtgcccattcccggacgcg 601
>gb|CB879431.1|CB879431 HP02D14w HP Hordeum vulgare subsp. vulgare cDNA clone HP02D14
3-PRIME, mRNA sequence
Length = 665
Score = 147 bits (74), Expect = 7e-034
Identities = 260/322 (80%)
Strand = Plus / Minus
Query: 565 cgcgctcgccacggggctgttcgactacgtgtgggtgcagttctacaacaacccgccgtg 624
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cgcgctcggcacggggttgttcgactacgtgtgggtgcagttctacaacaacccgccgtg 404
Query: 625 ccagtacagcgcgagcgccggcgtgggcagcctggcgaaagcgtgggcgcagtggacgtc 684
|||||||| | | || ||| | ||||| |||||| | |||||| | ||||| ||||
Sbjct: 403 ccagtacaccaaggccggcggggcgggcaacctggccagcgcgtggcagaagtgggcgtc 344
Query: 685 catcagggcggggcgggtgttcctcggcctccccgccgcgccccaggccgctggcagcgg 744
|| |||| ||| ||||||||| || ||||| || |||||| |||||| ||||||||
Sbjct: 343 gataccggcgcggcaggtgttcctggggctcccggcggcgcccgcggccgccggcagcgg 284
Query: 745 gttcgtgccggcgagcgacctcgtggcgcaggtgctgccggtggtcaagaactccaccaa 804
||||||| | | |||||||| || | |||||||||||||||| |||| || | ||
Sbjct: 283 gttcgtggagcccagcgacctgttgtccgaggtgctgccggtggtgcagaagtcgccgaa 224
Query: 805 gtacgggggcatcatgctctggtccaggtactacgacgggctcacggggtacagcgacgc 864
|||||| || |||||||||||||| |||| || ||| |||| || |||| ||||||
Sbjct: 223 gtacggcgggatcatgctctggtcgaggttcttcgatgggcagactgggttcagcgataa 164
Query: 865 ggtcaagtcctacgtgtgagct 886
||| |||||| ||||||||||
Sbjct: 163 ggtgaagtccagcgtgtgagct 142
Score = 107 bits (54), Expect = 6e-022
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 645 ctcggcgacgccgtgctcgacggcgtcgacttcgacatcgagagcggcgggagcgcgcac 586
Query: 450 tgggacgacctggc 463
||||||||||||||
Sbjct: 585 tgggacgacctggc 572
Score = 60.1 bits (30), Expect = 1e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 524 gctgcgccgcagtgcccgttcccggacgcg 553
||||||||||||||||||||||||||||||
Sbjct: 513 gctgcgccgcagtgcccgttcccggacgcg 484
>gb|BM443361.2|BM443361 EBro02_SQ003_M08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_M08 5', mRNA sequence
Length = 311
Score = 131 bits (66), Expect = 4e-029
Identities = 171/206 (83%), Gaps = 4/206 (1%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| ||||||| ||||||||||||||||||||||||||||| | | ||| || | ||||
Sbjct: 101 gcggcatcgcgatctactggggccagaacggcaacgagggcacgctggctcaagcgtgcg 160
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct: 161 cgacggggaactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaga 220
Query: 153 cgccggcgcttaacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcg 209
|||| ||| |||||||| |||||||||||||| |||| | |||| |||||| ||
Sbjct: 221 agccgctgctgaacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcg 280
Query: 210 tgggcgcggacgtcaaggcgtgccag 235
||||||| ||||||||| | ||||||
Sbjct: 281 tgggcgccgacgtcaagtcctgccag 306
>gb|BF631287.2|BF631287 HVSMEb0015I04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015I04f, mRNA sequence
Length = 746
Score = 119 bits (60), Expect = 2e-025
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 565 cgcgctcgccacggggctgttcgactacgtgtgggtgcagttctacaacaacccgccgtg 624
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 cgcgctcggtacggggctgttcgactacgtgtgggtgcagttctacaacaacccgccgtg 128
Query: 625 ccagtaca 632
||||||||
Sbjct: 129 ccagtaca 136
Score = 52.2 bits (26), Expect = 4e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 524 gctgcgccgcagtgcccgttcccggacgcg 553
||||||||||||||||| ||||||||||||
Sbjct: 19 gctgcgccgcagtgcccattcccggacgcg 48
>gb|BM371207.2|BM371207 EBro04_SQ003_N15_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_N15 5', mRNA sequence
Length = 579
Score = 119 bits (60), Expect = 2e-025
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 565 cgcgctcgccacggggctgttcgactacgtgtgggtgcagttctacaacaacccgccgtg 624
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cgcgctcggcacggggttgttcgactacgtgtgggtgcagttctacaacaacccgccgtg 476
Query: 625 ccagtaca 632
||||||||
Sbjct: 477 ccagtaca 484
Score = 107 bits (54), Expect = 6e-022
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 235 ctcggcgacgccgtgctcgacggcgtcgacttcgacatcgagagcggcgggagcgcgcac 294
Query: 450 tgggacgacctggc 463
||||||||||||||
Sbjct: 295 tgggacgacctggc 308
Score = 80.0 bits (40), Expect = 1e-013
Identities = 111/134 (82%), Gaps = 3/134 (2%)
Strand = Plus / Plus
Query: 164 aacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcgtgggcgcggac 220
|||||||| |||||||||||||| |||| | |||| |||||| ||||||||| |||
Sbjct: 25 aacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcgtgggcgccgac 84
Query: 221 gtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggc 280
|||||| | |||||| || ||| ||||||||||||||||||||||||| |||| | |
Sbjct: 85 gtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcggcggcgcctgt 144
Query: 281 agctacgggctctc 294
|||||||| |||||
Sbjct: 145 agctacggcctctc 158
Score = 60.1 bits (30), Expect = 1e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 524 gctgcgccgcagtgcccgttcccggacgcg 553
||||||||||||||||||||||||||||||
Sbjct: 367 gctgcgccgcagtgcccgttcccggacgcg 396
>gb|BI952762.1|BI952762 HVSMEm0007K18f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007K18f, mRNA sequence
Length = 418
Score = 111 bits (56), Expect = 4e-023
Identities = 129/154 (83%), Gaps = 1/154 (0%)
Strand = Plus / Plus
Query: 34 gcsgcatcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcg 92
|| ||||| | |||||||||||||||||||||||||| || | | ||| ||| | ||||
Sbjct: 65 gcggcatcacgatctactggggccagaacggcaacgaaggcacgctggctcaggcgtgcg 124
Query: 93 ccacgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcaga 152
| ||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||| || |
Sbjct: 125 cgacggggaactacaagttcgtcaacgtggccttcctcttcaccttcggcaggggccaca 184
Query: 153 cgccggcgcttaacctggcgggccactgcgaccc 186
|||| ||| |||||||| ||||||||||||||
Sbjct: 185 agccgctgctgaacctggccggccactgcgaccc 218
Score = 95.9 bits (48), Expect = 2e-018
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 565 cgcgctcgccacggggctgttcgactacgtgtgggtgcagttctacaacaacccgccgtg 624
|||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 270 cgcgctcggtacggggctgttccactacgtgtgggtgcagttttacaacaacccgccgtg 329
Query: 625 ccagtaca 632
||| ||||
Sbjct: 330 ccattaca 337
Score = 52.2 bits (26), Expect = 4e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 524 gctgcgccgcagtgcccgttcccggacgcg 553
||||||||||||||||| ||||||||||||
Sbjct: 220 gctgcgccgcagtgcccattcccggacgcg 249
>gb|CB876733.1|CB876733 HP02D14T HP Hordeum vulgare subsp. vulgare cDNA clone HP02D14
5-PRIME, mRNA sequence
Length = 340
Score = 103 bits (52), Expect = 1e-020
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 242 ctcggcgacgccgtgctcgacggcgtcgacttcgacatcgagagcggcgggagcgcgcac 301
Query: 450 tgggacgacctg 461
||||||||||||
Sbjct: 302 tgggacgacctg 313
Score = 103 bits (52), Expect = 1e-020
Identities = 114/134 (85%), Gaps = 3/134 (2%)
Strand = Plus / Plus
Query: 164 aacctggcgggccactgcgacccagcgagcggcgg---gtgcacgggcgtgggcgcggac 220
|||||||| |||||||||||||| |||| | |||| |||||| ||||||||| |||
Sbjct: 32 aacctggccggccactgcgacccggcgaccagcggatcgtgcaccttcgtgggcgccgac 91
Query: 221 gtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggc 280
|||||| | |||||| || ||| ||||||||||||||||||||||||| |||||||||
Sbjct: 92 gtcaagtcctgccagagccgcggcatcaaggtcctgctctccatcggcggcggcgtcggc 151
Query: 281 agctacgggctctc 294
|||||||| |||||
Sbjct: 152 agctacggcctctc 165
>gb|AL450587.1|AL450587 AL450587 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03E19u 5', mRNA sequence
Length = 511
Score = 93.9 bits (47), Expect = 1e-017
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 577 ggggctgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ggggctgttcgacaacgtgtgggtgcagttctacaacaatccgccgtgccagtac 55
>gb|CD663007.1|CD663007 UCRHV18_03dh04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_03dh04, mRNA sequence
Length = 274
Score = 50.2 bits (25), Expect = 1e-004
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 774 aggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctggtccaggt 833
|||||||||||||||| |||| || | |||||||| || |||||||||||||| ||||
Sbjct: 251 aggtgctgccggtggtgcagaagtcgccgaagtacggcgggatcatgctctggtcgaggt 192
Query: 834 actacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||| |||| || |||| |||||| ||| |||||| ||||||||||
Sbjct: 191 tcttcgatgggcagactgggttcagcgataaggtgaagtccagcgtgtgagct 139
>gb|AL504101.1|AL504101 AL504101 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04D09V 5', mRNA sequence
Length = 700
Score = 48.2 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || |||||||| |||||||| |||||||| |||||
Sbjct: 319 tcggcgacgccttcgtcgacggcatcgacttcttcatcgagaacggcg 366
>gb|AL505584.1|AL505584 AL505584 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08O17V 5', mRNA sequence
Length = 691
Score = 48.2 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || |||||||| |||||||| |||||||| |||||
Sbjct: 448 tcggcgacgccttcgtcgacggcatcgacttcttcatcgagaacggcg 495
>gb|BF257596.2|BF257596 HVSMEf0013E23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013E23f, mRNA sequence
Length = 528
Score = 48.2 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || |||||||| |||||||| |||||||| |||||
Sbjct: 422 tcggcgacgccttcgtcgacggcatcgacttcttcatcgagaacggcg 469
>gb|BG365477.2|BG365477 HVSMEi0002N15f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002N15f, mRNA sequence
Length = 859
Score = 48.2 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || |||||||||| |||||| |||||||| |||||
Sbjct: 140 tcggcgacgccttcgtcgacggcgtggacttcttcatcgagaacggcg 187
>gb|BG369379.2|BG369379 HVSMEi0024C18f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024C18f, mRNA sequence
Length = 859
Score = 48.2 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || |||||||| |||||||| |||||||| |||||
Sbjct: 432 tcggcgacgccttcgtcgacggcatcgacttcttcatcgagaacggcg 479
>gb|BQ471515.1|BQ471515 HV02K17r HV Hordeum vulgare subsp. vulgare cDNA clone HV02K17
5-PRIME, mRNA sequence
Length = 573
Score = 48.2 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || |||||||| |||||||| |||||||| |||||
Sbjct: 192 tcggcgacgccttcgtcgacggcatcgacttcttcatcgagaacggcg 239
>gb|BQ471902.1|BQ471902 HV03N04r HV Hordeum vulgare subsp. vulgare cDNA clone HV03N04
5-PRIME, mRNA sequence
Length = 492
Score = 48.2 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || |||||||| |||||||| |||||||| |||||
Sbjct: 192 tcggcgacgccttcgtcgacggcatcgacttcttcatcgagaacggcg 239
>gb|BM371947.2|BM371947 EBma08_SQ004_H18_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_H18 5', mRNA sequence
Length = 514
Score = 48.2 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || |||||||| |||||||| |||||||| |||||
Sbjct: 439 tcggcgacgccttcgtcgacggcatcgacttcttcatcgagaacggcg 486
>gb|CA018087.1|CA018087 HV07G18r HV Hordeum vulgare subsp. vulgare cDNA clone HV07G18
5-PRIME, mRNA sequence
Length = 554
Score = 48.2 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || |||||||| |||||||| |||||||| |||||
Sbjct: 427 tcggcgacgccttcgtcgacggcatcgacttcttcatcgagaacggcg 474
>gb|CB877554.1|CB877554 HP05F18T HP Hordeum vulgare subsp. vulgare cDNA clone HP05F18
5-PRIME, mRNA sequence
Length = 590
Score = 48.2 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || |||||||| |||||||| |||||||| |||||
Sbjct: 355 tcggcgacgccttcgtcgacggcatcgacttcttcatcgagaacggcg 402
>gb|BF616876.2|BF616876 HVSMEc0013E22f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0013E22f, mRNA sequence
Length = 572
Score = 44.2 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 704 ttcctcggcctccccgccgcgc 725
||||||||||||||||||||||
Sbjct: 218 ttcctcggcctccccgccgcgc 239
>gb|BI956552.1|BI956552 HVSMEn0004B19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004B19f, mRNA sequence
Length = 844
Score = 44.2 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 801 ccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 298 ccaactacggcggcgtcatgctctgggacaggtactacgacg 257
>gb|BQ458856.1|BQ458856 HA04A06r HA Hordeum vulgare subsp. vulgare cDNA clone HA04A06
5-PRIME, mRNA sequence
Length = 431
Score = 44.2 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 801 ccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 308 ccaactacggcggcgtcatgctctgggacaggtactacgacg 349
>gb|BQ458946.1|BQ458946 HA02L24r HA Hordeum vulgare subsp. vulgare cDNA clone HA02L24
5-PRIME, mRNA sequence
Length = 445
Score = 44.2 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 801 ccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 110 ccaactacggcggcgtcatgctctgggacaggtactacgacg 151
>gb|BQ656572.1|BQ656572 HA04A06u HA Hordeum vulgare subsp. vulgare cDNA clone HA04A06
3-PRIME, mRNA sequence
Length = 508
Score = 44.2 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 801 ccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 298 ccaactacggcggcgtcatgctctgggacaggtactacgacg 257
>gb|BQ656628.1|BQ656628 HA02L24u HA Hordeum vulgare subsp. vulgare cDNA clone HA02L24
3-PRIME, mRNA sequence
Length = 445
Score = 44.2 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 801 ccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 336 ccaactacggcggcgtcatgctctgggacaggtactacgacg 295
>gb|BU973947.1|BU973947 HB26H05r BC Hordeum vulgare subsp. vulgare cDNA clone HB26H05
5-PRIME, mRNA sequence
Length = 362
Score = 44.2 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 801 ccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 80 ccaactacggcggcgtcatgctctgggacaggtactacgacg 121
>gb|BU973958.1|BU973958 HB26H17r BC Hordeum vulgare subsp. vulgare cDNA clone HB26H17
5-PRIME, mRNA sequence
Length = 360
Score = 44.2 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 801 ccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 80 ccaactacggcggcgtcatgctctgggacaggtactacgacg 121
>gb|BU976364.1|BU976364 HA03J12r HA Hordeum vulgare subsp. vulgare cDNA clone HA03J12
5-PRIME, mRNA sequence
Length = 445
Score = 44.2 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 801 ccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 110 ccaactacggcggcgtcatgctctgggacaggtactacgacg 151
>gb|BU976365.1|BU976365 HA03J12u HA Hordeum vulgare subsp. vulgare cDNA clone HA03J12
3-PRIME, mRNA sequence
Length = 445
Score = 44.2 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 801 ccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 336 ccaactacggcggcgtcatgctctgggacaggtactacgacg 295
>gb|BU982796.1|BU982796 HA27K05r HA Hordeum vulgare subsp. vulgare cDNA clone HA27K05
5-PRIME, mRNA sequence
Length = 298
Score = 44.2 bits (22), Expect = 0.009
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 801 ccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 18 ccaactacggcggcgtcatgctctgggacaggtactacgacg 59
>gb|BU999259.1|BU999259 HI13O24r HI Hordeum vulgare subsp. vulgare cDNA clone HI13O24
5-PRIME, mRNA sequence
Length = 642
Score = 44.2 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 704 ttcctcggcctccccgccgcgc 725
||||||||||||||||||||||
Sbjct: 179 ttcctcggcctccccgccgcgc 200
>gb|CV062113.1|CV062113 BNEL76e10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL76e10 5' similar to putative
mitochondrial processing peptidase beta subunit, mRNA
sequence
Length = 852
Score = 44.2 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 704 ttcctcggcctccccgccgcgc 725
||||||||||||||||||||||
Sbjct: 202 ttcctcggcctccccgccgcgc 223
>gb|CD662403.1|CD662403 UCRHV18_02ac05_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02ac05, mRNA sequence
Length = 217
Score = 42.2 bits (21), Expect = 0.035
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 774 aggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctggtccaggt 833
|||||||||||||||| |||| || | |||||||| || |||||||| ||||| ||||
Sbjct: 199 aggtgctgccggtggtgcagaagtcgccgaagtacggcgggatcatgctttggtcgaggt 140
Query: 834 actacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||| |||| || |||| |||||| ||| |||||| ||||||||||
Sbjct: 139 tcttcgatgggcagactgggttcagcgataaggtgaagtccagcgtgtgagct 87
>gb|AL508981.1|AL508981 AL508981 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10F19V 5',
mRNA sequence
Length = 589
Score = 40.2 bits (20), Expect = 0.14
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 405 ctcgacggcgtcgacttcgacatcgagagcggcggg 440
|||||||||||||||||| | ||||| ||||||||
Sbjct: 447 ctcgacggcgtcgacttcttcctcgagcgcggcggg 482
>gb|BF624753.2|BF624753 HVSMEa0017K10f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017K10f, mRNA sequence
Length = 868
Score = 40.2 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 401 cgtcctcgacggcgtcgacttcga 424
||||| ||||||||||||||||||
Sbjct: 403 cgtccgcgacggcgtcgacttcga 426
>gb|BG368670.1|BG368670 HVSMEi0020C19f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020C19f, mRNA sequence
Length = 830
Score = 40.2 bits (20), Expect = 0.14
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcg 438
||||||||||| || ||||||| |||||||| |||||||| |||||
Sbjct: 437 tcggcgacgccttcaccgacggcatcgacttcttcatcgagaacggcg 484
>gb|BI780772.2|BI780772 EBes01_SQ002_C13_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_C13 5', mRNA sequence
Length = 546
Score = 40.2 bits (20), Expect = 0.14
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 405 ctcgacggcgtcgacttcgacatcgagagcggcggg 440
|||||||||||||||||| | ||||| ||||||||
Sbjct: 401 ctcgacggcgtcgacttcttcctcgagcgcggcggg 436
>gb|BM099403.2|BM099403 EBes01_SQ003_C11_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ003_C11 5', mRNA sequence
Length = 375
Score = 40.2 bits (20), Expect = 0.14
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 405 ctcgacggcgtcgacttcgacatcgagagcggcggg 440
|||||||||||||||||| | ||||| ||||||||
Sbjct: 277 ctcgacggcgtcgacttcttcttcgagcgcggcggg 312
>gb|BM099496.2|BM099496 EBes01_SQ003_G17_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ003_G17 5', mRNA sequence
Length = 418
Score = 40.2 bits (20), Expect = 0.14
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 405 ctcgacggcgtcgacttcgacatcgagagcggcggg 440
|||||||||||||||||| | ||||| ||||||||
Sbjct: 277 ctcgacggcgtcgacttcttcttcgagcgcggcggg 312
>gb|BI776880.2|BI776880 EBpi03_SQ001_D20_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ001_D20 5', mRNA sequence
Length = 323
Score = 40.2 bits (20), Expect = 0.14
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 405 ctcgacggcgtcgacttcgacatcgagagcggcggg 440
|||||||||||||||||| | ||||| ||||||||
Sbjct: 168 ctcgacggcgtcgacttcttcctcgagcgcggcggg 203
>gb|BU983832.1|BU983832 HA31C22r HA Hordeum vulgare subsp. vulgare cDNA clone HA31C22
5-PRIME, mRNA sequence
Length = 429
Score = 40.2 bits (20), Expect = 0.14
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 405 ctcgacggcgtcgacttcgacatcgagagcggcggg 440
|||||||||||||||||| | ||||| ||||||||
Sbjct: 272 ctcgacggcgtcgacttcttcctcgagcgcggcggg 307
>gb|CB879522.1|CB879522 HP02J03w HP Hordeum vulgare subsp. vulgare cDNA clone HP02J03
3-PRIME, mRNA sequence
Length = 699
Score = 40.2 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 401 cgtcctcgacggcgtcgacttcga 424
||||| ||||||||||||||||||
Sbjct: 137 cgtccgcgacggcgtcgacttcga 160
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 137,066
Number of Sequences: 312970
Number of extensions: 137066
Number of successful extensions: 39529
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39392
Number of HSP's gapped (non-prelim): 117
length of query: 1078
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1059
effective length of database: 169,188,109
effective search space: 179170207431
effective search space used: 179170207431
T: 0
A: 0
X1: 11 (21.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 20 (40.2 bits)