BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010745.2.1
(805 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV936469.1|AV936469 AV936469 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ467881.1|BJ467881 BJ467881 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ473760.1|BJ473760 BJ473760 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ474408.1|BJ474408 BJ474408 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ475687.1|BJ475687 BJ475687 K. Sato unpublished cDNA li... 72 3e-011
gb|BQ468777.1|BQ468777 HM02F02r HM Hordeum vulgare subsp. v... 72 3e-011
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 72 3e-011
gb|BU995809.1|BU995809 HM11G24r HM Hordeum vulgare subsp. v... 72 3e-011
gb|CA018105.1|CA018105 HV07H15r HV Hordeum vulgare subsp. v... 72 3e-011
gb|CB881964.1|CB881964 HM11G24w HM Hordeum vulgare subsp. v... 72 3e-011
gb|AV920504.1|AV920504 AV920504 K. Sato unpublished cDNA li... 66 2e-009
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 64 8e-009
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 64 8e-009
gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots... 52 3e-005
gb|CA023147.1|CA023147 HZ45F22r HZ Hordeum vulgare subsp. v... 46 0.002
gb|AL508271.1|AL508271 AL508271 Hordeum vulgare Barke devel... 44 0.007
gb|BG301241.1|BG301241 HVSMEb0020C10f Hordeum vulgare seedl... 42 0.028
gb|BF253999.2|BF253999 HVSMEf0002L11f Hordeum vulgare seedl... 42 0.028
gb|BG365441.1|BG365441 HVSMEi0002L08f Hordeum vulgare 20 DA... 42 0.028
gb|BG365882.1|BG365882 HVSMEi0004J22f Hordeum vulgare 20 DA... 42 0.028
gb|BF260659.3|BF260659 HVSMEf0022J15f Hordeum vulgare seedl... 42 0.028
gb|BG417583.2|BG417583 HVSMEk0018E23f Hordeum vulgare testa... 42 0.028
gb|AV912606.1|AV912606 AV912606 K. Sato unpublished cDNA li... 42 0.028
gb|AV917652.1|AV917652 AV917652 K. Sato unpublished cDNA li... 42 0.028
gb|AV918813.1|AV918813 AV918813 K. Sato unpublished cDNA li... 42 0.028
gb|AV919977.1|AV919977 AV919977 K. Sato unpublished cDNA li... 42 0.028
gb|AV921900.1|AV921900 AV921900 K. Sato unpublished cDNA li... 42 0.028
gb|BJ463795.1|BJ463795 BJ463795 K. Sato unpublished cDNA li... 42 0.028
gb|BJ467970.1|BJ467970 BJ467970 K. Sato unpublished cDNA li... 42 0.028
gb|BJ468579.1|BJ468579 BJ468579 K. Sato unpublished cDNA li... 42 0.028
gb|BQ468553.1|BQ468553 HM01J08T HM Hordeum vulgare subsp. v... 42 0.028
gb|BQ659752.1|BQ659752 HF01J17w HF Hordeum vulgare subsp. v... 42 0.028
gb|BQ662183.1|BQ662183 HR01O22u HR Hordeum vulgare subsp. v... 42 0.028
gb|BQ664794.1|BQ664794 HV04O11u HV Hordeum vulgare subsp. v... 42 0.028
gb|BQ766937.1|BQ766937 EBro08_SQ007_D17_R root, 3 week, dro... 42 0.028
gb|BU993981.1|BU993981 HM05D21r HM Hordeum vulgare subsp. v... 42 0.028
gb|CA000318.1|CA000318 HS09A03u HS Hordeum vulgare subsp. v... 42 0.028
gb|CA004937.1|CA004937 HU12M16u HU Hordeum vulgare subsp. v... 42 0.028
gb|CA005269.1|CA005269 HU11E05u HU Hordeum vulgare subsp. v... 42 0.028
gb|CA005762.1|CA005762 HU08L11u HU Hordeum vulgare subsp. v... 42 0.028
gb|CA006118.1|CA006118 HU05H21u HU Hordeum vulgare subsp. v... 42 0.028
gb|CB858315.1|CB858315 HI06J05w HI Hordeum vulgare subsp. v... 42 0.028
gb|CB880642.1|CB880642 HM07D21w HM Hordeum vulgare subsp. v... 42 0.028
gb|CB882027.1|CB882027 HM11K09w HM Hordeum vulgare subsp. v... 42 0.028
gb|BQ661030.1|BQ661030 HM01J08w HM Hordeum vulgare subsp. v... 40 0.11
gb|BQ661549.1|BQ661549 HM03P05u HM Hordeum vulgare subsp. v... 40 0.11
>gb|AV936469.1|AV936469 AV936469 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11g17 3', mRNA sequence
Length = 709
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 379 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 438
Query: 318 tgagtgct 325
||| ||||
Sbjct: 439 tgactgct 446
>gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30c23 5', mRNA sequence
Length = 688
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 536 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 477
Query: 318 tgagtgct 325
||| ||||
Sbjct: 476 tgactgct 469
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 624 tggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttg 670
||||||||||||||||||| ||||| | |||||| || |||||||||
Sbjct: 173 tggcgtagatcgccgtgtaatggtttaccccgataaaatccgccttg 127
>gb|BJ467881.1|BJ467881 BJ467881 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30c23 3', mRNA sequence
Length = 670
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 397 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 456
Query: 318 tgagtgct 325
||| ||||
Sbjct: 457 tgactgct 464
>gb|BJ473760.1|BJ473760 BJ473760 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal16n11 3', mRNA sequence
Length = 764
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 378 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 437
Query: 318 tgagtgct 325
||| ||||
Sbjct: 438 tgactgct 445
>gb|BJ474408.1|BJ474408 BJ474408 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13k12 3', mRNA sequence
Length = 769
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 380 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 439
Query: 318 tgagtgct 325
||| ||||
Sbjct: 440 tgactgct 447
Score = 42.1 bits (21), Expect = 0.028
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 624 tggcgtagatcgccgtgtagtggtt 648
||||||||||||||||||| |||||
Sbjct: 743 tggcgtagatcgccgtgtaatggtt 767
>gb|BJ475687.1|BJ475687 BJ475687 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal29i07 3', mRNA sequence
Length = 645
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 354 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 413
Query: 318 tgagtgct 325
||| ||||
Sbjct: 414 tgactgct 421
>gb|BQ468777.1|BQ468777 HM02F02r HM Hordeum vulgare subsp. vulgare cDNA clone HM02F02
5-PRIME, mRNA sequence
Length = 553
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 436 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 377
Query: 318 tgagtgct 325
||| ||||
Sbjct: 376 tgactgct 369
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 624 tggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttg 670
||||||||||||||||||| ||||| | |||||| || |||||||||
Sbjct: 73 tggcgtagatcgccgtgtaatggtttaccccgataaaatccgccttg 27
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 179 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 120
Query: 318 tgagtgct 325
||| ||||
Sbjct: 119 tgactgct 112
>gb|BU995809.1|BU995809 HM11G24r HM Hordeum vulgare subsp. vulgare cDNA clone HM11G24
5-PRIME, mRNA sequence
Length = 630
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 431 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 372
Query: 318 tgagtgct 325
||| ||||
Sbjct: 371 tgactgct 364
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 624 tggcgtagatcgccgtgtagtggttcagcccgatgaagtccgcct 668
||||||||||||||||||| ||||| | |||||| || |||||||
Sbjct: 68 tggcgtagatcgccgtgtaatggtttaccccgataaaatccgcct 24
>gb|CA018105.1|CA018105 HV07H15r HV Hordeum vulgare subsp. vulgare cDNA clone HV07H15
5-PRIME, mRNA sequence
Length = 504
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 331 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 272
Query: 318 tgagtgct 325
||| ||||
Sbjct: 271 tgactgct 264
>gb|CB881964.1|CB881964 HM11G24w HM Hordeum vulgare subsp. vulgare cDNA clone HM11G24
3-PRIME, mRNA sequence
Length = 653
Score = 71.9 bits (36), Expect = 3e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcc 317
|||||||||||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct: 408 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgtttgctcctctcc 467
Query: 318 tgagtgct 325
||| ||||
Sbjct: 468 tgactgct 475
>gb|AV920504.1|AV920504 AV920504 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14f05 3', mRNA sequence
Length = 569
Score = 65.9 bits (33), Expect = 2e-009
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 258 cccactcgaagttgtccagcagcgtccacacgaagtagcc-ccgcacgtttgctccgttc 316
|||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||
Sbjct: 407 cccactcgaagttgtccatgaggctccacacgaagtagccaccgcacgtttgctcctctc 466
Query: 317 ctgagtgct 325
|||| ||||
Sbjct: 467 ctgactgct 475
>gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. vulgare cDNA clone HM01N16
3-PRIME, mRNA sequence
Length = 580
Score = 63.9 bits (32), Expect = 8e-009
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 259 ccactcgaagttgtccagcagcgtccacacgaagtagccc 298
||||||||||||||||||||||| |||| |||||||||||
Sbjct: 326 ccactcgaagttgtccagcagcgaccacgcgaagtagccc 365
>gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G11 5', mRNA sequence
Length = 608
Score = 63.9 bits (32), Expect = 8e-009
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 259 ccactcgaagttgtccagcagcgtccacacgaagtagccc 298
||||||||||||||||||||||| |||| |||||||||||
Sbjct: 301 ccactcgaagttgtccagcagcgaccacgcgaagtagccc 262
>gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08J03V 5', mRNA sequence
Length = 545
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 256 cgcccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgt 305
||||||||| ||||||||||||| | |||| |||||||||| |||||||
Sbjct: 403 cgcccactcccagttgtccagcagagaccacgcgaagtagccgcgcacgt 354
>gb|CA023147.1|CA023147 HZ45F22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45F22
5-PRIME, mRNA sequence
Length = 450
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 267 agttgtccagcagcgtccacacgaagtagcc 297
||||||| ||||||| |||||||||||||||
Sbjct: 374 agttgtcgagcagcgaccacacgaagtagcc 344
>gb|AL508271.1|AL508271 AL508271 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08E11V 5',
mRNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.007
Identities = 60/70 (85%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 258 cccactcgaagttgtccagcagcgtccaca-cgaagtagccccgca-cgtttgctccgtt 315
|||||||||||||||||| || |||||| |||||||||| |||| |||||||||| |
Sbjct: 466 cccactcgaagttgtccatgaggctccacaccgaagtagccacgcaccgtttgctcctct 525
Query: 316 cctgagtgct 325
||||| ||||
Sbjct: 526 cctgactgct 535
>gb|BG301241.1|BG301241 HVSMEb0020C10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020C10f, mRNA sequence
Length = 895
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 602 ccacacgaagtagcctcgcacgttggacccgttcctg 566
>gb|BF253999.2|BF253999 HVSMEf0002L11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002L11f, mRNA sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 175 ccacacgaagtagcctcgcacgttggacccgttcctg 139
>gb|BG365441.1|BG365441 HVSMEi0002L08f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002L08f, mRNA sequence
Length = 797
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 349 ccacacgaagtagcctcgcacgttggacccgttcctg 313
>gb|BG365882.1|BG365882 HVSMEi0004J22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004J22f, mRNA sequence
Length = 923
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 316 ccacacgaagtagccctgcacgttcgacccgttcctg 280
>gb|BF260659.3|BF260659 HVSMEf0022J15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022J15f, mRNA sequence
Length = 608
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 65 ccacacgaagtagcctcgcacgttggacccgttcctg 29
>gb|BG417583.2|BG417583 HVSMEk0018E23f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0018E23f, mRNA sequence
Length = 822
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 736 ccacacgaagtagcctcgcacgttggacccgttcctg 700
>gb|AV912606.1|AV912606 AV912606 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4k06 3', mRNA sequence
Length = 531
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 357 ccacacgaagtagccctgcacgttcgacccgttcctg 393
>gb|AV917652.1|AV917652 AV917652 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10o07 3', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 391 ccacacgaagtagccctgcacgttcgacccgttcctg 427
>gb|AV918813.1|AV918813 AV918813 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22f16 3', mRNA sequence
Length = 698
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 389 ccacacgaagtagccctgcacgttcgacccgttcctg 425
>gb|AV919977.1|AV919977 AV919977 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8m07 3', mRNA sequence
Length = 529
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 352 ccacacgaagtagccctgcacgttcgacccgttcctg 388
>gb|AV921900.1|AV921900 AV921900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19a14 3', mRNA sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 374 ccacacgaagtagccctgcacgttcgacccgttcctg 410
>gb|BJ463795.1|BJ463795 BJ463795 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30i11 5', mRNA sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 386 ccacacgaagtagccctgcacgttcgacccgttcctg 350
>gb|BJ467970.1|BJ467970 BJ467970 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30i11 3', mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 394 ccacacgaagtagccctgcacgttcgacccgttcctg 430
>gb|BJ468579.1|BJ468579 BJ468579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39g17 3', mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 374 ccacacgaagtagccctgcacgttcgacccgttcctg 410
>gb|BQ468553.1|BQ468553 HM01J08T HM Hordeum vulgare subsp. vulgare cDNA clone HM01J08
5-PRIME, mRNA sequence
Length = 529
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 331 ccacacgaagtagcctcgcacgttggacccgttcctg 295
>gb|BQ659752.1|BQ659752 HF01J17w HF Hordeum vulgare subsp. vulgare cDNA clone HF01J17
3-PRIME, mRNA sequence
Length = 681
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 401 ccacacgaagtagccctgcacgttcgacccgttcctg 437
>gb|BQ662183.1|BQ662183 HR01O22u HR Hordeum vulgare subsp. vulgare cDNA clone HR01O22
3-PRIME, mRNA sequence
Length = 532
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 439 ccacacgaagtagccctgcacgttcgacccgttcctg 475
>gb|BQ664794.1|BQ664794 HV04O11u HV Hordeum vulgare subsp. vulgare cDNA clone HV04O11
3-PRIME, mRNA sequence
Length = 603
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 405 ccacacgaagtagccctgcacgttcgacccgttcctg 441
>gb|BQ766937.1|BQ766937 EBro08_SQ007_D17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D17 5', mRNA sequence
Length = 743
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 713 ccacacgaagtagcctcgcacgttggacccgttcctg 677
>gb|BU993981.1|BU993981 HM05D21r HM Hordeum vulgare subsp. vulgare cDNA clone HM05D21
5-PRIME, mRNA sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 370 ccacacgaagtagcctcgcacgttggacccgttcctg 334
>gb|CA000318.1|CA000318 HS09A03u HS Hordeum vulgare subsp. vulgare cDNA clone HS09A03
3-PRIME, mRNA sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 376 ccacacgaagtagccctgcacgttcgacccgttcctg 412
>gb|CA004937.1|CA004937 HU12M16u HU Hordeum vulgare subsp. vulgare cDNA clone HU12M16
3-PRIME, mRNA sequence
Length = 511
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 471 ccacacgaagtagcctcgcacgttggacccgttcctg 507
>gb|CA005269.1|CA005269 HU11E05u HU Hordeum vulgare subsp. vulgare cDNA clone HU11E05
3-PRIME, mRNA sequence
Length = 559
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 492 ccacacgaagtagcctcgcacgttggacccgttcctg 528
>gb|CA005762.1|CA005762 HU08L11u HU Hordeum vulgare subsp. vulgare cDNA clone HU08L11
3-PRIME, mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 478 ccacacgaagtagcctcgcacgttggacccgttcctg 514
>gb|CA006118.1|CA006118 HU05H21u HU Hordeum vulgare subsp. vulgare cDNA clone HU05H21
3-PRIME, mRNA sequence
Length = 541
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 403 ccacacgaagtagccctgcacgttcgacccgttcctg 439
>gb|CB858315.1|CB858315 HI06J05w HI Hordeum vulgare subsp. vulgare cDNA clone HI06J05
3-PRIME, mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 508 ccacacgaagtagccctgcacgttcgacccgttcctg 544
>gb|CB880642.1|CB880642 HM07D21w HM Hordeum vulgare subsp. vulgare cDNA clone HM07D21
3-PRIME, mRNA sequence
Length = 535
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 367 ccacacgaagtagcctcgcacgttggacccgttcctg 403
>gb|CB882027.1|CB882027 HM11K09w HM Hordeum vulgare subsp. vulgare cDNA clone HM11K09
3-PRIME, mRNA sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.028
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
||||||||||||||| |||||||| | |||||||||
Sbjct: 489 ccacacgaagtagcctcgcacgttggacccgttcctg 525
>gb|BQ661030.1|BQ661030 HM01J08w HM Hordeum vulgare subsp. vulgare cDNA clone HM01J08
3-PRIME, mRNA sequence
Length = 521
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtt 306
||||||||||||||| ||||||||
Sbjct: 494 ccacacgaagtagcctcgcacgtt 517
>gb|BQ661549.1|BQ661549 HM03P05u HM Hordeum vulgare subsp. vulgare cDNA clone HM03P05
3-PRIME, mRNA sequence
Length = 496
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 290 aagtagccccgcacgtttgctccgttcctgag 321
||||||||| |||||| ||||||||||||||
Sbjct: 373 aagtagcccttcacgttggctccgttcctgag 404
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,609
Number of Sequences: 312970
Number of extensions: 79609
Number of successful extensions: 19189
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19083
Number of HSP's gapped (non-prelim): 106
length of query: 805
length of database: 175,134,539
effective HSP length: 19
effective length of query: 786
effective length of database: 169,188,109
effective search space: 132981853674
effective search space used: 132981853674
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)