BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010462.2.1
(638 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL500991.1|AL500991 AL500991 Hordeum vulgare Barke roots... 234 3e-060
gb|BG310118.1|BG310118 HVSMEc0016N14f Hordeum vulgare seedl... 232 1e-059
gb|AV918830.1|AV918830 AV918830 K. Sato unpublished cDNA li... 232 1e-059
gb|BQ662656.1|BQ662656 HS03H24u HS Hordeum vulgare subsp. v... 232 1e-059
gb|BQ756566.1|BQ756566 EBem09_SQ003_B12_R embryo, 1 Day ger... 232 1e-059
gb|BQ768383.1|BQ768383 EBro08_SQ011_F13_R root, 3 week, dro... 232 1e-059
gb|BU989823.1|BU989823 HF22M18r HF Hordeum vulgare subsp. v... 232 1e-059
gb|BU990169.1|BU990169 HF24E14r HF Hordeum vulgare subsp. v... 232 1e-059
gb|BU990224.1|BU990224 HF24H03r HF Hordeum vulgare subsp. v... 232 1e-059
gb|CB882049.1|CB882049 HM11L11w HM Hordeum vulgare subsp. v... 232 1e-059
gb|AL501962.1|AL501962 AL501962 Hordeum vulgare Barke roots... 230 4e-059
gb|AL503163.1|AL503163 AL503163 Hordeum vulgare Barke roots... 226 7e-058
gb|BQ760542.1|BQ760542 EBro03_SQ001_F05_R root, 3 week, wat... 218 2e-055
gb|CB858981.1|CB858981 HI08O15w HI Hordeum vulgare subsp. v... 218 2e-055
gb|CB881918.1|CB881918 HM11E17w HM Hordeum vulgare subsp. v... 216 7e-055
gb|BI777236.2|BI777236 EBro03_SQ002_I15_R root, 3 week, wat... 210 4e-053
gb|BJ467713.1|BJ467713 BJ467713 K. Sato unpublished cDNA li... 208 2e-052
gb|BF258018.2|BF258018 HVSMEf0014I06f Hordeum vulgare seedl... 202 1e-050
gb|AJ462386.1|AJ462386 AJ462386 S00002 Hordeum vulgare subs... 198 2e-049
gb|BI778700.2|BI778700 EBro01_SQ001_C06_R root, 3 week, hyd... 188 2e-046
gb|BI955715.1|BI955715 HVSMEm0024C22f Hordeum vulgare green... 167 6e-040
gb|AL503142.1|AL503142 AL503142 Hordeum vulgare Barke roots... 163 9e-039
gb|AJ435172.1|AJ435172 AJ435172 S00002 Hordeum vulgare subs... 133 8e-030
gb|AL502625.1|AL502625 AL502625 Hordeum vulgare Barke roots... 125 2e-027
gb|BQ760615.1|BQ760615 EBro03_SQ002_H19_R root, 3 week, wat... 109 1e-022
gb|BQ767013.1|BQ767013 EBro08_SQ007_A24_R root, 3 week, dro... 103 7e-021
gb|BI947758.1|BI947758 HVSMEl0006M12f Hordeum vulgare spike... 101 3e-020
gb|AV921319.1|AV921319 AV921319 K. Sato unpublished cDNA li... 101 3e-020
gb|BM443270.1|BM443270 EBro02_SQ003_F17_R root, 3 week, hyd... 101 3e-020
gb|BJ468382.1|BJ468382 BJ468382 K. Sato unpublished cDNA li... 101 3e-020
gb|BM370557.2|BM370557 EBro08_SQ004_J10_R root, 3 week, dro... 92 3e-017
gb|BQ766648.1|BQ766648 EBro08_SQ006_A20_R root, 3 week, dro... 90 1e-016
gb|CB878390.1|CB878390 HP08G03T HP Hordeum vulgare subsp. v... 86 2e-015
gb|BQ765396.1|BQ765396 EBro03_SQ007_E05_R root, 3 week, wat... 84 6e-015
gb|BQ765456.1|BQ765456 EBro03_SQ007_P05_R root, 3 week, wat... 82 3e-014
gb|BE421683.1|BE421683 HWM012cG.10r ITEC HWM Barley Leaf Li... 78 4e-013
gb|AL501346.1|AL501346 AL501346 Hordeum vulgare Barke roots... 78 4e-013
gb|AL501348.1|AL501348 AL501348 Hordeum vulgare Barke roots... 78 4e-013
gb|AL501349.1|AL501349 AL501349 Hordeum vulgare Barke roots... 78 4e-013
gb|AL501350.1|AL501350 AL501350 Hordeum vulgare Barke roots... 78 4e-013
gb|AL502072.1|AL502072 AL502072 Hordeum vulgare Barke roots... 78 4e-013
gb|AL502555.1|AL502555 AL502555 Hordeum vulgare Barke roots... 78 4e-013
gb|AL502685.1|AL502685 AL502685 Hordeum vulgare Barke roots... 78 4e-013
gb|AL502996.1|AL502996 AL502996 Hordeum vulgare Barke roots... 78 4e-013
gb|BG365997.1|BG365997 HVSMEi0004M09f Hordeum vulgare 20 DA... 78 4e-013
gb|BF265916.1|BF265916 HV_CEa0013K19f Hordeum vulgare seedl... 78 4e-013
gb|BI959376.1|BI959376 HVSMEn0019H01f Hordeum vulgare rachi... 78 4e-013
gb|BI959574.1|BI959574 HVSMEn0020E07f Hordeum vulgare rachi... 78 4e-013
gb|BI959849.1|BI959849 HVSMEn0022A20f Hordeum vulgare rachi... 78 4e-013
gb|BF254448.3|BF254448 HVSMEf0004A20f Hordeum vulgare seedl... 78 4e-013
gb|BF259754.3|BF259754 HVSMEf0020C19f Hordeum vulgare seedl... 78 4e-013
gb|BE558376.3|BE558376 HV_CEb0017H01f Hordeum vulgare seedl... 78 4e-013
gb|AV917458.1|AV917458 AV917458 K. Sato unpublished cDNA li... 78 4e-013
gb|AV919005.1|AV919005 AV919005 K. Sato unpublished cDNA li... 78 4e-013
gb|AV927824.1|AV927824 AV927824 K. Sato unpublished cDNA li... 78 4e-013
gb|AV928004.1|AV928004 AV928004 K. Sato unpublished cDNA li... 78 4e-013
gb|AV928635.1|AV928635 AV928635 K. Sato unpublished cDNA li... 78 4e-013
gb|AV930308.1|AV930308 AV930308 K. Sato unpublished cDNA li... 78 4e-013
gb|AV930975.1|AV930975 AV930975 K. Sato unpublished cDNA li... 78 4e-013
gb|AV931028.1|AV931028 AV931028 K. Sato unpublished cDNA li... 78 4e-013
gb|AV931622.1|AV931622 AV931622 K. Sato unpublished cDNA li... 78 4e-013
gb|AV931809.1|AV931809 AV931809 K. Sato unpublished cDNA li... 78 4e-013
gb|AV931810.1|AV931810 AV931810 K. Sato unpublished cDNA li... 78 4e-013
gb|BJ452093.1|BJ452093 BJ452093 K. Sato unpublished cDNA li... 78 4e-013
gb|BJ465265.1|BJ465265 BJ465265 K. Sato unpublished cDNA li... 78 4e-013
gb|BJ468508.1|BJ468508 BJ468508 K. Sato unpublished cDNA li... 78 4e-013
gb|BQ661371.1|BQ661371 HM03D09u HM Hordeum vulgare subsp. v... 78 4e-013
gb|BQ664513.1|BQ664513 HV03K13u HV Hordeum vulgare subsp. v... 78 4e-013
gb|BM372199.2|BM372199 EBro03_SQ004_E20_R root, 3 week, wat... 78 4e-013
gb|BQ763018.1|BQ763018 EBro02_SQ006_L19_R root, 3 week, hyd... 78 4e-013
gb|BQ763878.1|BQ763878 EBro03_SQ005_L15_R root, 3 week, wat... 78 4e-013
gb|BQ765924.1|BQ765924 EBro03_SQ008_E16_R root, 3 week, wat... 78 4e-013
gb|CB880955.1|CB880955 HM08F11w HM Hordeum vulgare subsp. v... 78 4e-013
emb|Z49146.1|HVPAL3MR H.vulgare partial PAL mRNA for phenyl... 78 4e-013
gb|AL501343.1|AL501343 AL501343 Hordeum vulgare Barke roots... 72 2e-011
gb|BG414191.1|BG414191 HVSMEk0001A07f Hordeum vulgare testa... 70 1e-010
gb|BI956268.1|BI956268 HVSMEn0001M16f Hordeum vulgare rachi... 68 4e-010
gb|AL501309.1|AL501309 AL501309 Hordeum vulgare Barke roots... 64 6e-009
gb|BI956808.1|BI956808 HVSMEn0005G21f Hordeum vulgare rachi... 64 6e-009
gb|AL501352.1|AL501352 AL501352 Hordeum vulgare Barke roots... 62 2e-008
gb|AL503927.1|AL503927 AL503927 Hordeum vulgare Barke roots... 62 2e-008
gb|BF261029.2|BF261029 HVSMEf0023J05f Hordeum vulgare seedl... 62 2e-008
gb|AV919026.1|AV919026 AV919026 K. Sato unpublished cDNA li... 62 2e-008
gb|AV919053.1|AV919053 AV919053 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ466939.1|BJ466939 BJ466939 K. Sato unpublished cDNA li... 62 2e-008
gb|BQ468898.1|BQ468898 HM02L09r HM Hordeum vulgare subsp. v... 62 2e-008
gb|BQ469057.1|BQ469057 HM03D09r HM Hordeum vulgare subsp. v... 62 2e-008
gb|BQ661267.1|BQ661267 HM02L09u HM Hordeum vulgare subsp. v... 62 2e-008
gb|BQ767217.1|BQ767217 EBro08_SQ008_E10_R root, 3 week, dro... 62 2e-008
gb|BU968202.1|BU968202 HB06L24r BC Hordeum vulgare subsp. v... 62 2e-008
gb|CA016735.1|CA016735 HV06I16u HV Hordeum vulgare subsp. v... 62 2e-008
gb|AL501291.1|AL501291 AL501291 Hordeum vulgare Barke roots... 58 4e-007
gb|AL502364.1|AL502364 AL502364 Hordeum vulgare Barke roots... 58 4e-007
gb|AV919724.1|AV919724 AV919724 K. Sato unpublished cDNA li... 58 4e-007
gb|AV921618.1|AV921618 AV921618 K. Sato unpublished cDNA li... 58 4e-007
gb|AV928876.1|AV928876 AV928876 K. Sato unpublished cDNA li... 58 4e-007
gb|AV928881.1|AV928881 AV928881 K. Sato unpublished cDNA li... 58 4e-007
gb|BQ768801.1|BQ768801 EBro08_SQ012_P15_R root, 3 week, dro... 58 4e-007
emb|Z49145.1|HVPAL2MR H.vulgare partial PAL mRNA for phenyl... 58 4e-007
gb|AL505275.1|AL505275 AL505275 Hordeum vulgare Barke roots... 56 1e-006
gb|BJ464895.1|BJ464895 BJ464895 K. Sato unpublished cDNA li... 56 1e-006
gb|BI959802.1|BI959802 HVSMEn0021J20f Hordeum vulgare rachi... 54 6e-006
gb|BG415885.2|BG415885 HVSMEk0008K04f Hordeum vulgare testa... 54 6e-006
gb|BE214612.2|BE214612 HV_CEb0003P13f Hordeum vulgare seedl... 54 6e-006
gb|AV913531.1|AV913531 AV913531 K. Sato unpublished cDNA li... 54 6e-006
gb|BM444563.1|BM444563 EBem09_SQ005_L16_R embryo, 1 Day ger... 54 6e-006
gb|BE437808.1|BE437808 SFR007.G02F990625 ITEC SFR Barley Le... 50 9e-005
gb|BE437962.1|BE437962 SFR009.D04F990512 ITEC SFR Barley Le... 50 9e-005
gb|BE438184.1|BE438184 SFR010.H12F990722 ITEC SFR Barley Le... 50 9e-005
gb|BI959268.1|BI959268 HVSMEn0019A02f Hordeum vulgare rachi... 50 9e-005
gb|BF264601.3|BF264601 HV_CEa0009N21f Hordeum vulgare seedl... 50 9e-005
gb|AV912724.1|AV912724 AV912724 K. Sato unpublished cDNA li... 50 9e-005
gb|AV918666.1|AV918666 AV918666 K. Sato unpublished cDNA li... 50 9e-005
gb|BJ459164.1|BJ459164 BJ459164 K. Sato unpublished cDNA li... 50 9e-005
gb|BQ762717.1|BQ762717 EBro02_SQ004_I20_R root, 3 week, hyd... 50 9e-005
gb|BQ765192.1|BQ765192 EBro03_SQ006_A15_R root, 3 week, wat... 50 9e-005
gb|BQ765219.1|BQ765219 EBro03_SQ006_F15_R root, 3 week, wat... 50 9e-005
gb|BQ765937.1|BQ765937 EBro03_SQ008_G18_R root, 3 week, wat... 50 9e-005
gb|BE438019.1|BE438019 SFR010.A02F990628 ITEC SFR Barley Le... 48 4e-004
gb|BI958930.1|BI958930 HVSMEn0017E12f Hordeum vulgare rachi... 48 4e-004
gb|BI959878.1|BI959878 HVSMEn0022D03f Hordeum vulgare rachi... 48 4e-004
gb|BM816193.1|BM816193 HC109D04_T3.ab1 HC Hordeum vulgare s... 48 4e-004
gb|AL502617.1|AL502617 AL502617 Hordeum vulgare Barke roots... 46 0.001
gb|BI957141.1|BI957141 HVSMEn0007L14f Hordeum vulgare rachi... 46 0.001
gb|BM443147.2|BM443147 EBro02_SQ002_N12_R root, 3 week, hyd... 46 0.001
gb|BI777223.2|BI777223 EBro03_SQ002_H18_R root, 3 week, wat... 46 0.001
gb|BQ767318.1|BQ767318 EBro08_SQ008_F18_R root, 3 week, dro... 46 0.001
gb|CV058661.1|CV058661 BNEL3D9 Barley EST endosperm library... 38 0.34
>gb|AL500991.1|AL500991 AL500991 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02K13u 3', mRNA sequence
Length = 385
Score = 234 bits (118), Expect = 3e-060
Identities = 263/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Minus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 345 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 286
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 285 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 226
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 225 cctacccactntaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 166
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 165 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 108
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 107 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactct 49
Query: 302 gctgagc 308
|||||||
Sbjct: 48 gctgagc 42
>gb|BG310118.1|BG310118 HVSMEc0016N14f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016N14f, mRNA sequence
Length = 809
Score = 232 bits (117), Expect = 1e-059
Identities = 263/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 215 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 274
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 275 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 334
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 335 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 394
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 395 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 452
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 453 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactct 511
Query: 302 gctgagc 308
|||||||
Sbjct: 512 gctgagc 518
>gb|AV918830.1|AV918830 AV918830 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22g18 3', mRNA sequence
Length = 605
Score = 232 bits (117), Expect = 1e-059
Identities = 263/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Minus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 502 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 443
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 442 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 383
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 382 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 323
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 322 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 265
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 264 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactct 206
Query: 302 gctgagc 308
|||||||
Sbjct: 205 gctgagc 199
>gb|BQ662656.1|BQ662656 HS03H24u HS Hordeum vulgare subsp. vulgare cDNA clone HS03H24
3-PRIME, mRNA sequence
Length = 557
Score = 232 bits (117), Expect = 1e-059
Identities = 263/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Minus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 557 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 498
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 497 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 438
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 437 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 378
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 377 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 320
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 319 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactct 261
Query: 302 gctgagc 308
|||||||
Sbjct: 260 gctgagc 254
>gb|BQ756566.1|BQ756566 EBem09_SQ003_B12_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ003_B12 5', mRNA sequence
Length = 389
Score = 232 bits (117), Expect = 1e-059
Identities = 263/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 74 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 133
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 134 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 193
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 194 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 253
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 254 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 311
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 312 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactct 370
Query: 302 gctgagc 308
|||||||
Sbjct: 371 gctgagc 377
>gb|BQ768383.1|BQ768383 EBro08_SQ011_F13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_F13 5', mRNA sequence
Length = 513
Score = 232 bits (117), Expect = 1e-059
Identities = 263/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 175 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 234
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 235 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 294
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 295 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 354
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 355 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 412
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 413 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactct 471
Query: 302 gctgagc 308
|||||||
Sbjct: 472 gctgagc 478
>gb|BU989823.1|BU989823 HF22M18r HF Hordeum vulgare subsp. vulgare cDNA clone HF22M18
5-PRIME, mRNA sequence
Length = 592
Score = 232 bits (117), Expect = 1e-059
Identities = 263/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 266 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 325
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 326 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 385
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 386 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 445
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 446 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 503
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 504 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactct 562
Query: 302 gctgagc 308
|||||||
Sbjct: 563 gctgagc 569
>gb|BU990169.1|BU990169 HF24E14r HF Hordeum vulgare subsp. vulgare cDNA clone HF24E14
5-PRIME, mRNA sequence
Length = 592
Score = 232 bits (117), Expect = 1e-059
Identities = 263/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 266 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 325
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 326 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 385
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 386 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 445
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 446 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 503
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 504 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactct 562
Query: 302 gctgagc 308
|||||||
Sbjct: 563 gctgagc 569
>gb|BU990224.1|BU990224 HF24H03r HF Hordeum vulgare subsp. vulgare cDNA clone HF24H03
5-PRIME, mRNA sequence
Length = 591
Score = 232 bits (117), Expect = 1e-059
Identities = 263/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 265 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 324
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 325 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 384
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 385 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 444
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 445 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 502
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 503 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactct 561
Query: 302 gctgagc 308
|||||||
Sbjct: 562 gctgagc 568
>gb|CB882049.1|CB882049 HM11L11w HM Hordeum vulgare subsp. vulgare cDNA clone HM11L11
3-PRIME, mRNA sequence
Length = 658
Score = 232 bits (117), Expect = 1e-059
Identities = 263/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Minus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 385 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 326
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 325 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 266
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 265 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 206
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 205 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 148
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 147 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactct 89
Query: 302 gctgagc 308
|||||||
Sbjct: 88 gctgagc 82
>gb|AL501962.1|AL501962 AL501962 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06A07u 3', mRNA sequence
Length = 344
Score = 230 bits (116), Expect = 4e-059
Identities = 262/306 (85%), Gaps = 5/306 (1%)
Strand = Plus / Minus
Query: 5 caaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn-c 62
||||||||| |||||||||||| | |||| ||| || ||||||||||||||||||| |
Sbjct: 344 caaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccgc 285
Query: 63 ncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggtc 122
|| ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| ||
Sbjct: 284 gcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgctc 225
Query: 123 ctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagag 182
|||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 224 ctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgagaa 165
Query: 183 gaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaag 242
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| ||||||||
Sbjct: 164 gacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaag 107
Query: 243 caccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctg 302
||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 106 cac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactctg 48
Query: 303 ctgagc 308
||||||
Sbjct: 47 ctgagc 42
>gb|AL503163.1|AL503163 AL503163 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09O20u 3', mRNA sequence
Length = 431
Score = 226 bits (114), Expect = 7e-058
Identities = 262/307 (85%), Gaps = 5/307 (1%)
Strand = Plus / Minus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 345 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 286
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 285 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 226
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 225 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 166
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| |||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||
Sbjct: 165 agacacggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaa 108
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
|||| |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||
Sbjct: 107 gcac-atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctnccactct 49
Query: 302 gctgagc 308
|||||||
Sbjct: 48 gctgagc 42
>gb|BQ760542.1|BQ760542 EBro03_SQ001_F05_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ001_F05 5', mRNA sequence
Length = 321
Score = 218 bits (110), Expect = 2e-055
Identities = 234/272 (86%), Gaps = 4/272 (1%)
Strand = Plus / Plus
Query: 38 gcgntgcccaaggaggtggaggcn-cncgngcgnccgtggagagcggcanccccctggtc 96
||| ||||||||||||||||||| | || ||| ||||||||| ||||| || ||||
Sbjct: 17 gcgctgcccaaggaggtggaggccgcgcgcgcgtccgtggagaacggcacgccgctggct 76
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||| |||||| ||| ||||| |||||||| || |||| |||||| ||||||| | |
Sbjct: 77 cccaaccggatcaaggactgccgctcctacccactctaccagttcgtccgcgaggtgtgc 136
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
||||||||||||||||||||||||| ||| |||| ||| || |||||||| ||||||||
Sbjct: 137 ggcaccgagtacctgaccggcgagaagacacggtcgcccggg-gaggagctgaacaaggt 195
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
||| |||||| || ||| ||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 196 gctggtggcc-atgaacgagcgcaagcac-atcgacccgctgctggagtgcctcaaagag 253
Query: 277 tggaacggcgcgcccctgccgctctgctgagc 308
|||||||||||||||||||| |||||||||||
Sbjct: 254 tggaacggcgcgcccctgccactctgctgagc 285
>gb|CB858981.1|CB858981 HI08O15w HI Hordeum vulgare subsp. vulgare cDNA clone HI08O15
3-PRIME, mRNA sequence
Length = 572
Score = 218 bits (110), Expect = 2e-055
Identities = 234/272 (86%), Gaps = 4/272 (1%)
Strand = Plus / Minus
Query: 38 gcgntgcccaaggaggtggaggcn-cncgngcgnccgtggagagcggcanccccctggtc 96
||| ||||||||||||||||||| | || ||| ||||||||| ||||| || ||||
Sbjct: 549 gcgctgcccaaggaggtggaggccgcgcgcgcgtccgtggagaacggcacgccgctggct 490
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||| |||||| ||| ||||| |||||||| || |||| |||||| ||||||| | |
Sbjct: 489 cccaaccggatcaaggactgccgctcctacccactctaccagttcgtccgcgaggtgtgc 430
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
||||||||||||||||||||||||| ||| |||| ||| || |||||||| ||||||||
Sbjct: 429 ggcaccgagtacctgaccggcgagaagacacggtcgcccggg-gaggagctgaacaaggt 371
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
||| |||||| || ||| ||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 370 gctggtggcc-atgaacgagcgcaagcac-atcgacccgctgctggagtgcctcaaagag 313
Query: 277 tggaacggcgcgcccctgccgctctgctgagc 308
|||||||||||||||||||| |||||||||||
Sbjct: 312 tggaacggcgcgcccctgccactctgctgagc 281
>gb|CB881918.1|CB881918 HM11E17w HM Hordeum vulgare subsp. vulgare cDNA clone HM11E17
3-PRIME, mRNA sequence
Length = 620
Score = 216 bits (109), Expect = 7e-055
Identities = 262/307 (85%), Gaps = 6/307 (1%)
Strand = Plus / Minus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 326 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 267
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 266 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 207
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 206 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 147
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| ||| | ||||| |||||||| ||||||||||| |||| |||| ||| |||||||
Sbjct: 146 agacacggt-cgcccggggaggagctgaacaaggtgctggtgg-ccatgaacgagcgcaa 89
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||
Sbjct: 88 gca-catcgacccgctgctggagtgcctcaaagagtgg-acggcgcgcccctgccactct 31
Query: 302 gctgagc 308
|||||||
Sbjct: 30 gctgagc 24
>gb|BI777236.2|BI777236 EBro03_SQ002_I15_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_I15 5', mRNA sequence
Length = 445
Score = 210 bits (106), Expect = 4e-053
Identities = 249/292 (85%), Gaps = 5/292 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 157 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 216
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 217 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 276
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 277 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 336
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| ||| | ||||| |||||||| ||||||||||| |||| |||| ||| |||||||
Sbjct: 337 agacacggt-cgcccggggaggagctgaacaaggtgctggtgg-ccatgaacgagcgcaa 394
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccct 293
||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 395 gca-catcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccct 445
>gb|BJ467713.1|BJ467713 BJ467713 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i14 3', mRNA sequence
Length = 595
Score = 208 bits (105), Expect = 2e-052
Identities = 258/303 (85%), Gaps = 6/303 (1%)
Strand = Plus / Minus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 319 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 260
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 259 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 200
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 199 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 140
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| ||| | ||||| |||||||| ||||||||||| |||| |||| ||| |||||||
Sbjct: 139 agacacggt-cgcccggggaggagctgaacaaggtgctggtgg-ccatgaacgagcgcaa 82
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctct 301
||| ||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||
Sbjct: 81 gca-catcgacccgctgctggagtgcctcaaagagt-gaacggcgcgcccctgccactct 24
Query: 302 gct 304
|||
Sbjct: 23 gct 21
>gb|BF258018.2|BF258018 HVSMEf0014I06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014I06f, mRNA sequence
Length = 570
Score = 202 bits (102), Expect = 1e-050
Identities = 227/265 (85%), Gaps = 4/265 (1%)
Strand = Plus / Minus
Query: 45 ccaaggaggtggaggcn-cncgngcgnccgtggagagcggcanccccctggtccccaaca 103
||||||||||| |||| | || ||| ||||||||| ||||| || |||| ||||||
Sbjct: 325 ccaaggaggtgaaggccgcgcgcgcgtccgtggagaacggcacgccgctggctcccaacc 266
Query: 104 ggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccg 163
|||||| ||| ||||| |||||||| || |||| |||||| ||||||| | ||||||||
Sbjct: 265 ggatcaaggactgccgctcctacccactctaccagttcgtccgcgaggtgtgcggcaccg 206
Query: 164 agtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtg 223
|||||||||||||||||| ||| |||| ||| || |||||||| ||||||||||| |||
Sbjct: 205 agtacctgaccggcgagaagacacggtcgcccggg-gaggagctgaacaaggtgctggtg 147
Query: 224 gcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacg 283
||| || ||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 146 gcc-atgaacgagcgcaagcac-atcgacccgctgctggagtgcctcaaagagtggaacg 89
Query: 284 gcgcgcccctgccgctctgctgagc 308
||||||||||||| |||||||||||
Sbjct: 88 gcgcgcccctgccactctgctgagc 64
>gb|AJ462386.1|AJ462386 AJ462386 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200074D09F1, mRNA sequence
Length = 360
Score = 198 bits (100), Expect = 2e-049
Identities = 209/242 (86%), Gaps = 3/242 (1%)
Strand = Plus / Plus
Query: 67 gcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggtcctac 126
||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| ||||||
Sbjct: 17 gcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgctcctac 76
Query: 127 ccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaggacc 186
|| || |||| |||||| ||||||| | |||||||||||||||||||||||||| |||
Sbjct: 77 ccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgagaagaca 136
Query: 187 aggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaagcacc 246
|||| ||| || |||||||| ||||||||||| |||||| || ||| |||||||||||
Sbjct: 137 cggtcgcccggg-gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaagcac- 193
Query: 247 atcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctgctga 306
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 194 atcgacccgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactctgctga 253
Query: 307 gc 308
||
Sbjct: 254 gc 255
>gb|BI778700.2|BI778700 EBro01_SQ001_C06_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_C06 5', mRNA sequence
Length = 586
Score = 188 bits (95), Expect = 2e-046
Identities = 238/281 (84%), Gaps = 5/281 (1%)
Strand = Plus / Plus
Query: 4 ccaaggtggccgagttcgagcagcaggtccgcgcg-cgntgcccaaggaggtggaggcn- 61
|||||||||| |||||||||||| | |||| ||| || |||||||||||||||||||
Sbjct: 309 ccaaggtggcggagttcgagcagaacatccgggcggcgctgcccaaggaggtggaggccg 368
Query: 62 cncgngcgnccgtggagagcggcanccccctggtccccaacaggatcagggagtgccggt 121
| || ||| ||||||||| ||||| || |||| |||||| |||||| ||| ||||| |
Sbjct: 369 cgcgcgcgtccgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgct 428
Query: 122 cctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 429 cctacccactctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcgaga 488
Query: 182 ggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaa 241
||| ||| | ||||| |||||||| ||||||||||| |||| |||| ||| |||||||
Sbjct: 489 agacacggt-cgcccggggaggagctgaacaaggtgctggtgg-ccatgaacgagcgcaa 546
Query: 242 gcaccatcgacccgctgctcgagtgcctcaaggagtggaac 282
||| ||||||||||||||| ||||||||||| |||||||||
Sbjct: 547 gca-catcgacccgctgctggagtgcctcaaagagtggaac 586
>gb|BI955715.1|BI955715 HVSMEm0024C22f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024C22f, mRNA sequence
Length = 517
Score = 167 bits (84), Expect = 6e-040
Identities = 183/212 (86%), Gaps = 3/212 (1%)
Strand = Plus / Plus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||| |||||| ||| ||||| |||||||| || |||| |||||| ||||||| | |
Sbjct: 22 cccaaccggatcaaggactgccgctcctacccactctaccagttcgtccgcgaggtgtgc 81
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
||||||||||||||||||||||||| ||| |||| ||| || |||||||| ||||||||
Sbjct: 82 ggcaccgagtacctgaccggcgagaagacacggtcgcccggg-gaggagctgaacaaggt 140
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
||| |||||| || ||| ||||||||| | | ||||||||||| ||||||||||| |||
Sbjct: 141 gctggtggcc-atgaacgagcgcaagcgcg-tggacccgctgctggagtgcctcaaagag 198
Query: 277 tggaacggcgcgcccctgccgctctgctgagc 308
|||||||||||||||||||| |||||||||||
Sbjct: 199 tggaacggcgcgcccctgccactctgctgagc 230
>gb|AL503142.1|AL503142 AL503142 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09N10u 3', mRNA sequence
Length = 440
Score = 163 bits (82), Expect = 9e-039
Identities = 150/169 (88%), Gaps = 3/169 (1%)
Strand = Plus / Minus
Query: 140 tcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaggaccaggtccccccggc 199
|||| ||||||| | |||||||||||||||||||||||||| ||| |||| ||| ||
Sbjct: 435 tcgtccgcgaggtgtncggcaccgagtacctgaccggcgagaagacacggtcgcccggg- 377
Query: 200 gaggagctcaacaaggtgctcgtggcccatcaaccagcgcaagcaccatcgacccgctgc 259
|||||||| ||||||||||| |||||| || ||| ||||||||||| |||||||||||||
Sbjct: 376 gaggagctgaacaaggtgctggtggcc-atgaacgagcgcaagcac-atcgacccgctgc 319
Query: 260 tcgagtgcctcaaggagtggaacggcgcgcccctgccgctctgctgagc 308
| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 318 tggagtgcctcaaagagtggaacggcgcgcccctgccactctgctgagc 270
>gb|AJ435172.1|AJ435172 AJ435172 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051E07F1, mRNA sequence
Length = 390
Score = 133 bits (67), Expect = 8e-030
Identities = 105/115 (91%), Gaps = 2/115 (1%)
Strand = Plus / Plus
Query: 194 cccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaagcaccatcgacc 253
||||| |||||||| ||||||||||| |||||| || ||| ||||||||||| |||||||
Sbjct: 16 cccggggaggagctgaacaaggtgctggtggcc-atgaacgagcgcaagcac-atcgacc 73
Query: 254 cgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctgctgagc 308
||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 74 cgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactctgctgagc 128
>gb|AL502625.1|AL502625 AL502625 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08D13u 3', mRNA sequence
Length = 452
Score = 125 bits (63), Expect = 2e-027
Identities = 132/150 (88%), Gaps = 4/150 (2%)
Strand = Plus / Minus
Query: 161 ccgagtacctgacc-ggcgagaggaccaggtccccccggcgaggagctcaa-caaggtgc 218
|||||||||||||| ||||||| ||| |||| |||||| |||||||| || ||||||||
Sbjct: 445 ccgagtacctgacccggcgagaagacacggtcgccccggggaggagctgaaacaaggtgc 386
Query: 219 tcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtg 278
| ||| || || | | ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 385 tggtgacc-atgancgagcgcaagcac-atcgacccgctgctggagtgcctcaaagagtg 328
Query: 279 gaacggcgcgcccctgccgctctgctgagc 308
|||||||||||||||||| |||||||||||
Sbjct: 327 gaacggcgcgcccctgccactctgctgagc 298
>gb|BQ760615.1|BQ760615 EBro03_SQ002_H19_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_H19 5', mRNA sequence
Length = 201
Score = 109 bits (55), Expect = 1e-022
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 226 ccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacggc 285
|||| ||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 2 ccatgaacgagcgcaagcac-atcgacccgctgctggagtgcctcaaagagtggaacggc 60
Query: 286 gcgcccctgccgctctgctgagc 308
||||||||||| |||||||||||
Sbjct: 61 gcgcccctgccactctgctgagc 83
>gb|BQ767013.1|BQ767013 EBro08_SQ007_A24_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_A24 5', mRNA sequence
Length = 690
Score = 103 bits (52), Expect = 7e-021
Identities = 166/200 (83%), Gaps = 3/200 (1%)
Strand = Plus / Plus
Query: 97 cccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 156
|||||||| |||| ||||| || || ||||| || |||||||| ||||| |||||| ||
Sbjct: 378 cccaacagaatcaccgagtgtcgctcgtaccctctctaccggtttgtgcgtgaggagctc 437
Query: 157 ggcaccgagtacctgaccggcgagaggaccaggtccccccggcgaggagctcaacaaggt 216
|| || | ||||| ||||| |||| ||| | || ||| ||||||||||||||||||||
Sbjct: 438 ggaactgtatacctaaccggagagaagacacgatcaccc-ggcgaggagctcaacaaggt 496
Query: 217 gctcgtggcccatcaaccagcgcaagcaccatcgacccgctgctcgagtgcctcaaggag 276
|||||||| |||| ||||| ||||||| |||||| | ||||| |||||||||||||||
Sbjct: 497 gctcgtgg-ccattaaccaaggcaagca-catcgatgcactgcttgagtgcctcaaggag 554
Query: 277 tggaacggcgcgcccctgcc 296
|||||||||| ||||||||
Sbjct: 555 tggaacggcgaacccctgcc 574
>gb|BI947758.1|BI947758 HVSMEl0006M12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006M12f, mRNA sequence
Length = 476
Score = 101 bits (51), Expect = 3e-020
Identities = 150/179 (83%), Gaps = 3/179 (1%)
Strand = Plus / Plus
Query: 115 tgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgacc 174
|||||||| ||||| ||||||||||| |||||||||||| | ||||| | |||| |||||
Sbjct: 107 tgccggtcataccctctgtaccggtttgtgcgcgaggagctgggcacggtgtacttgacc 166
Query: 175 ggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaacc 234
|| |||| ||| |||| ||| ||||||||| | |||| ||| |||| ||| || ||||
Sbjct: 167 ggagagaagactcggtcaccc-ggcgaggaggtggacaaagtgttcgttgcc-atgaacc 224
Query: 235 agcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccct 293
|| | |||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 225 agggtaagcac-atcgatgcgctgctggagtgcctcaaggagtggaacggcgagcccct 282
>gb|AV921319.1|AV921319 AV921319 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23a16 3', mRNA sequence
Length = 586
Score = 101 bits (51), Expect = 3e-020
Identities = 150/179 (83%), Gaps = 3/179 (1%)
Strand = Plus / Minus
Query: 115 tgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgacc 174
|||||||| ||||| ||||||||||| |||||||||||| | ||||| | |||| |||||
Sbjct: 318 tgccggtcataccctctgtaccggtttgtgcgcgaggagctgggcacggtgtacttgacc 259
Query: 175 ggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaacc 234
|| |||| ||| |||| ||| ||||||||| | |||| ||| |||| ||| || ||||
Sbjct: 258 ggagagaagactcggtcaccc-ggcgaggaggtggacaaagtgttcgttgcc-atgaacc 201
Query: 235 agcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccct 293
|| | |||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 200 agggtaagcac-atcgatgcgctgctggagtgcctcaaggagtggaacggcgagcccct 143
>gb|BM443270.1|BM443270 EBro02_SQ003_F17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_F17 5', mRNA sequence
Length = 313
Score = 101 bits (51), Expect = 3e-020
Identities = 92/103 (89%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 194 cccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaagcaccatcgacc 253
||||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||
Sbjct: 9 cccggcgaggagctcaacaaggtgctcgtgg-ccattaaccaaggcaagca-catcgatg 66
Query: 254 cgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 67 cactgcttgagtgcctcaaggagtggaacggcgaacccctgcc 109
>gb|BJ468382.1|BJ468382 BJ468382 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38i22 3', mRNA sequence
Length = 602
Score = 101 bits (51), Expect = 3e-020
Identities = 150/179 (83%), Gaps = 3/179 (1%)
Strand = Plus / Minus
Query: 115 tgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgacc 174
|||||||| ||||| ||||||||||| |||||||||||| | ||||| | |||| |||||
Sbjct: 413 tgccggtcataccctctgtaccggtttgtgcgcgaggagctgggcacggtgtacttgacc 354
Query: 175 ggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaacc 234
|| |||| ||| |||| ||| ||||||||| | |||| ||| |||| ||| || ||||
Sbjct: 353 ggagagaagactcggtcaccc-ggcgaggaggtggacaaagtgttcgttgcc-atgaacc 296
Query: 235 agcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccct 293
|| | |||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 295 agggtaagcac-atcgatgcgctgctggagtgcctcaaggagtggaacggcgagcccct 238
>gb|BM370557.2|BM370557 EBro08_SQ004_J10_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_J10 5', mRNA sequence
Length = 620
Score = 91.7 bits (46), Expect = 3e-017
Identities = 157/190 (82%), Gaps = 3/190 (1%)
Strand = Plus / Plus
Query: 115 tgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgacc 174
|||||||| ||||| ||||||||||| |||||||||||| | ||||| | |||| |||||
Sbjct: 230 tgccggtcataccctctgtaccggtttgtgcgcgaggagctgggcacggtgtacttgacc 289
Query: 175 ggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaacc 234
|| |||| ||| |||| ||| || |||||| | |||||||| | || || || ||||
Sbjct: 290 ggagagaagacacggtcacccggg-gaggaggtggacaaggtgtttgttgct-atgaacc 347
Query: 235 agcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctg 294
|| | |||||| |||||| ||||||| || ||||||||||| |||||||||| |||||||
Sbjct: 348 agggtaagcac-atcgacgcgctgctggaatgcctcaaggaatggaacggcgagcccctg 406
Query: 295 ccgctctgct 304
|| |||||||
Sbjct: 407 cctctctgct 416
>gb|BQ766648.1|BQ766648 EBro08_SQ006_A20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_A20 5', mRNA sequence
Length = 577
Score = 89.7 bits (45), Expect = 1e-016
Identities = 138/167 (82%), Gaps = 3/167 (1%)
Strand = Plus / Plus
Query: 15 gagttcgagcagcaggtccgcgc-gcgntgcccaagga-ggtggagg-cncncgngcgnc 71
|||||||||||| | |||| || ||| |||||||||| |||||||| | | || ||| |
Sbjct: 411 gagttcgagcagaacatccgggcggcgctgcccaaggagggtggaggccgcgcgcgcgtc 470
Query: 72 cgtggagagcggcanccccctggtccccaacaggatcagggagtgccggtcctacccgct 131
|||||||| ||||| || |||| |||||| |||||| ||| ||||| |||||||| ||
Sbjct: 471 cgtggagaacggcacgccgctggctcccaaccggatcaaggactgccgctcctacccact 530
Query: 132 gtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcg 178
|||| |||||| ||||||| | |||||||||||||||||||||||
Sbjct: 531 ctaccagttcgtccgcgaggtgtgcggcaccgagtacctgaccggcg 577
>gb|CB878390.1|CB878390 HP08G03T HP Hordeum vulgare subsp. vulgare cDNA clone HP08G03
5-PRIME, mRNA sequence
Length = 307
Score = 85.7 bits (43), Expect = 2e-015
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 254 cgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctgctgagc 308
||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 10 cgctgctggagtgcctcaaagagtggaacggcgcgcccctgccactctgctgagc 64
>gb|BQ765396.1|BQ765396 EBro03_SQ007_E05_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_E05 5', mRNA sequence
Length = 478
Score = 83.8 bits (42), Expect = 6e-015
Identities = 150/182 (82%), Gaps = 3/182 (1%)
Strand = Plus / Minus
Query: 115 tgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgacc 174
|||||||| ||||| ||||||||||| |||||||||||| | ||||| | |||| |||||
Sbjct: 364 tgccggtcataccctctgtaccggtttgtgcgcgaggagctgggcacggtgtacttgacc 305
Query: 175 ggcgagaggaccaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaacc 234
|| |||| ||| ||| | ||||| |||||| | |||||||| | || | | || ||||
Sbjct: 304 ggagagaagacacggt-cacccggggaggaggtggacaaggtgtttgttg-ctatgaacc 247
Query: 235 agcgcaagcaccatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctg 294
|| | ||||| ||||||| ||||||| || ||||||||||| |||||||||| |||||||
Sbjct: 246 agggtaagca-catcgacgcgctgctggaatgcctcaaggaatggaacggcgagcccctg 188
Query: 295 cc 296
||
Sbjct: 187 cc 186
>gb|BQ765456.1|BQ765456 EBro03_SQ007_P05_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_P05 5', mRNA sequence
Length = 434
Score = 81.8 bits (41), Expect = 3e-014
Identities = 149/181 (82%), Gaps = 3/181 (1%)
Strand = Plus / Plus
Query: 124 tacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagagg 183
||||| ||||||||||| |||||||||||| | ||||| | |||| ||||||| |||| |
Sbjct: 5 taccctctgtaccggtttgtgcgcgaggagctgggcacggtgtacttgaccggagagaag 64
Query: 184 accaggtccccccggcgaggagctcaacaaggtgctcgtggcccatcaaccagcgcaagc 243
|| |||| ||| || |||||| | |||||||| | || || || |||||| | ||||
Sbjct: 65 acacggtcacccggg-gaggaggtggacaaggtgtttgttgct-atgaaccagggtaagc 122
Query: 244 accatcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgccgctctgc 303
|| |||||| ||||||| || ||||||||||| |||||||||| ||||||||| ||||||
Sbjct: 123 ac-atcgacgcgctgctggaatgcctcaaggaatggaacggcgagcccctgcctctctgc 181
Query: 304 t 304
|
Sbjct: 182 t 182
>gb|BE421683.1|BE421683 HWM012cG.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM012cG.10, mRNA sequence
Length = 1180
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 331 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 381
Score = 61.9 bits (31), Expect = 2e-008
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 95 tccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 154
|||||||| ||||| |||| || |||| | |||||||||||| ||||| |||||||||
Sbjct: 183 tccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagc 242
Query: 155 tcggcaccgagtacctgaccggcgaga 181
||||| || |||||| ||||||||||
Sbjct: 243 tcggctgcgtgtacctcaccggcgaga 269
>gb|AL501346.1|AL501346 AL501346 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O05u 3', mRNA sequence
Length = 690
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 343 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 293
Score = 61.9 bits (31), Expect = 2e-008
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 95 tccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 154
|||||||| ||||| |||| || |||| | |||||||||||| ||||| |||||||||
Sbjct: 491 tccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagc 432
Query: 155 tcggcaccgagtacctgaccggcgaga 181
||||| || |||||| ||||||||||
Sbjct: 431 tcggctgcgtgtacctcaccggcgaga 405
>gb|AL501348.1|AL501348 AL501348 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O09u 3', mRNA sequence
Length = 594
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 343 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 293
Score = 61.9 bits (31), Expect = 2e-008
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 95 tccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 154
|||||||| ||||| |||| || |||| | |||||||||||| ||||| |||||||||
Sbjct: 491 tccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagc 432
Query: 155 tcggcaccgagtacctgaccggcgaga 181
||||| || |||||| ||||||||||
Sbjct: 431 tcggctgcgtgtacctcaccggcgaga 405
>gb|AL501349.1|AL501349 AL501349 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O10u 3', mRNA sequence
Length = 559
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 343 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 293
Score = 61.9 bits (31), Expect = 2e-008
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 95 tccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 154
|||||||| ||||| |||| || |||| | |||||||||||| ||||| |||||||||
Sbjct: 491 tccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagc 432
Query: 155 tcggcaccgagtacctgaccggcgaga 181
||||| || |||||| ||||||||||
Sbjct: 431 tcggctgcgtgtacctcaccggcgaga 405
>gb|AL501350.1|AL501350 AL501350 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O11u 3', mRNA sequence
Length = 605
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 343 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 293
Score = 61.9 bits (31), Expect = 2e-008
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 95 tccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 154
|||||||| ||||| |||| || |||| | |||||||||||| ||||| |||||||||
Sbjct: 491 tccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagc 432
Query: 155 tcggcaccgagtacctgaccggcgaga 181
||||| || |||||| ||||||||||
Sbjct: 431 tcggctgcgtgtacctcaccggcgaga 405
>gb|AL502072.1|AL502072 AL502072 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06G07u 3', mRNA sequence
Length = 479
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 343 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 293
Score = 56.0 bits (28), Expect = 1e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 126 cccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgaga 181
|||||||||||| ||||| ||||||||| ||||| || |||||| ||||||||||
Sbjct: 460 cccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgaga 405
>gb|AL502555.1|AL502555 AL502555 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07P09u 3', mRNA sequence
Length = 436
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 361 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 311
>gb|AL502685.1|AL502685 AL502685 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08G13u 3', mRNA sequence
Length = 556
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 345 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 295
Score = 61.9 bits (31), Expect = 2e-008
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 95 tccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 154
|||||||| ||||| |||| || |||| | |||||||||||| ||||| |||||||||
Sbjct: 493 tccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagc 434
Query: 155 tcggcaccgagtacctgaccggcgaga 181
||||| || |||||| ||||||||||
Sbjct: 433 tcggctgcgtgtacctcaccggcgaga 407
>gb|AL502996.1|AL502996 AL502996 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G10u 3', mRNA sequence
Length = 537
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 406 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 356
>gb|BG365997.1|BG365997 HVSMEi0004M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004M09f, mRNA sequence
Length = 939
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 528 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 578
Score = 54.0 bits (27), Expect = 6e-006
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 95 tccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 154
|||||||| ||||| |||| || |||| | |||||||||||| || || |||||||||
Sbjct: 380 tccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttagtccgcgaggagc 439
Query: 155 tcggcaccgagtacctgaccggcgaga 181
||||| || |||||| ||||||||||
Sbjct: 440 tcggctgcgtgtacctcaccggcgaga 466
>gb|BF265916.1|BF265916 HV_CEa0013K19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013K19f, mRNA sequence
Length = 773
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 614
Score = 61.9 bits (31), Expect = 2e-008
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 95 tccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 154
|||||||| ||||| |||| || |||| | |||||||||||| ||||| |||||||||
Sbjct: 416 tccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagc 475
Query: 155 tcggcaccgagtacctgaccggcgaga 181
||||| || |||||| ||||||||||
Sbjct: 476 tcggctgcgtgtacctcaccggcgaga 502
>gb|BI959376.1|BI959376 HVSMEn0019H01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019H01f, mRNA sequence
Length = 613
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 354 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 304
Score = 61.9 bits (31), Expect = 2e-008
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 95 tccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 154
|||||||| ||||| |||| || |||| | |||||||||||| ||||| |||||||||
Sbjct: 502 tccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagc 443
Query: 155 tcggcaccgagtacctgaccggcgaga 181
||||| || |||||| ||||||||||
Sbjct: 442 tcggctgcgtgtacctcaccggcgaga 416
>gb|BI959574.1|BI959574 HVSMEn0020E07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020E07f, mRNA sequence
Length = 681
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 414 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 364
>gb|BI959849.1|BI959849 HVSMEn0022A20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022A20f, mRNA sequence
Length = 623
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 415 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 465
Score = 61.9 bits (31), Expect = 2e-008
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 95 tccccaacaggatcagggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 154
|||||||| ||||| |||| || |||| | |||||||||||| ||||| |||||||||
Sbjct: 267 tccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagc 326
Query: 155 tcggcaccgagtacctgaccggcgaga 181
||||| || |||||| ||||||||||
Sbjct: 327 tcggctgcgtgtacctcaccggcgaga 353
>gb|BF254448.3|BF254448 HVSMEf0004A20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004A20f, mRNA sequence
Length = 368
Score = 77.8 bits (39), Expect = 4e-013
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 246 catcgacccgctgctcgagtgcctcaaggagtggaacggcgcgcccctgcc 296
||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 29 catcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 79
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,700
Number of Sequences: 312970
Number of extensions: 74700
Number of successful extensions: 21942
Number of sequences better than 0.5: 128
Number of HSP's better than 0.5 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21586
Number of HSP's gapped (non-prelim): 237
length of query: 638
length of database: 175,134,539
effective HSP length: 19
effective length of query: 619
effective length of database: 169,188,109
effective search space: 104727439471
effective search space used: 104727439471
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)