BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704661.2.1
(798 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA li... 359 9e-098
gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA li... 357 4e-097
gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. v... 353 6e-096
gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-a... 325 1e-087
gb|BE060385.2|BE060385 HVSMEg0012C17f Hordeum vulgare pre-a... 281 2e-074
gb|AV930935.1|AV930935 AV930935 K. Sato unpublished cDNA li... 206 8e-052
gb|AV931472.1|AV931472 AV931472 K. Sato unpublished cDNA li... 206 8e-052
gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA li... 62 3e-008
gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA li... 62 3e-008
gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. v... 60 1e-007
gb|BU979822.1|BU979822 HA17H16r HA Hordeum vulgare subsp. v... 60 1e-007
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 52 3e-005
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 52 3e-005
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 52 3e-005
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 52 3e-005
gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green... 50 1e-004
gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa... 50 1e-004
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 50 1e-004
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 50 1e-004
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 50 1e-004
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 50 1e-004
gb|CA018769.1|CA018769 HV09J15r HV Hordeum vulgare subsp. v... 50 1e-004
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 46 0.002
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 46 0.002
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 46 0.002
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 46 0.002
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 46 0.002
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 46 0.002
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 46 0.002
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 46 0.002
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 46 0.002
gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA li... 46 0.002
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 46 0.002
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 46 0.002
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 46 0.002
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 46 0.002
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 46 0.002
gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, ... 46 0.002
dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 44 0.007
gb|AL510176.1|AL510176 AL510176 Hordeum vulgare Barke devel... 42 0.028
gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA li... 42 0.028
gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-a... 42 0.028
gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subs... 42 0.028
gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA li... 42 0.028
gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA li... 42 0.028
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 42 0.028
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 42 0.028
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 42 0.028
gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no... 42 0.028
gb|BI777829.2|BI777829 EBro08_SQ002_D17_R root, 3 week, dro... 42 0.028
gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm librar... 42 0.028
gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgar... 42 0.028
gb|BM444115.1|BM444115 EBem09_SQ004_D08_R embryo, 1 Day ger... 40 0.11
gb|BM444949.1|BM444949 EBem09_SQ006_P20_R embryo, 1 Day ger... 40 0.11
gb|BJ463761.1|BJ463761 BJ463761 K. Sato unpublished cDNA li... 40 0.11
gb|BJ463762.1|BJ463762 BJ463762 K. Sato unpublished cDNA li... 40 0.11
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.11
gb|BM443862.2|BM443862 EBem09_SQ001_M07_R embryo, 1 Day ger... 40 0.11
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.11
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.43
gb|BQ294541.1|BQ294541 LP20150 Lemma/palea-enriched cDNA li... 38 0.43
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 38 0.43
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 38 0.43
>gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j21 3', mRNA sequence
Length = 643
Score = 359 bits (181), Expect = 9e-098
Identities = 415/493 (84%)
Strand = Plus / Plus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| |||||||||||||||||||| || |||| || ||||| || || ||||| |||
Sbjct: 151 cttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtactttgac 210
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||||| || |||||||| || |||||||| | ||||||||||| |||||||||||||
Sbjct: 211 cagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccattgtaa 270
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
||||||||||| ||| |||| | |||||| ||| | ||||| || ||||||||||||||
Sbjct: 271 tgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaacctagaccg 330
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|||||||||||||| || |||||| |||||||||||||||||||| |||| || |
Sbjct: 331 agaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagacctgga 390
Query: 409 gggagagtaccaagtttccagagtgatctatcttcattaagcttctgccacgagtgataa 468
|||||||| ||||||||||| || || || || |||||||||||||| |||| ||
Sbjct: 391 gggagagtgccaagtttccatagcagtccgtcctcgttaagcttctgccaaaagtggtag 450
Query: 469 atttcagttatgttctgccgcctccattcagccaggtcaaacacattcattccaaaagcc 528
| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 451 agttcagttatgttctgccgcctccattcagccagatcaaacacgttcattccaaaagcc 510
Query: 529 caaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattcaggtat 588
|| |||| |||| ||||||||| |||| | |||| ||| |||| ||||||| |||
Sbjct: 511 cagccacatgcatcggggtcaaaattctttgcaataacaggacttgagaaattcaagtaa 570
Query: 589 cgatcatagcgatggaaactctctccacaagtctcaacagcaccgtttaccttccccttc 648
|| || |||||||||| ||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 571 cggccaaagcgatggaagctctctccacaagtctctacagcaccattaaccttccccttc 630
Query: 649 atgttgattgacc 661
|| | ||||||||
Sbjct: 631 atatcgattgacc 643
>gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j21 5', mRNA sequence
Length = 612
Score = 357 bits (180), Expect = 4e-097
Identities = 467/560 (83%), Gaps = 2/560 (0%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| |||||||||||||||||||| || |||| || ||||| || || ||||| |||
Sbjct: 574 cttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtactttgac 515
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||||| || |||||||| || |||||||| | ||||||||||| |||||||||||||
Sbjct: 514 cagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccattgtaa 455
Query: 289 tgtatgactgcag-catgctcaatgtctctgctgttaacatggggattgtaacctagacc 347
||||||||||| | || |||| | |||||| ||| | ||||| || ||||||||||||||
Sbjct: 454 tgtatgactgcgggcacgctccaggtctctactgcttacatgtgggttgtaacctagacc 395
Query: 348 aagaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaa 407
|||||||||||||| || |||||| |||||||||||||||||||| |||| ||
Sbjct: 394 gagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagacctgg 335
Query: 408 agggagagtaccaagtttccagagtgatctatcttcattaagcttctgccacgagtgata 467
||||||||| ||||||||||| || || || || |||||||||||||| |||| ||
Sbjct: 334 agggagagtgccaagtttccatagcagtccgtcctcgttaagcttctgccaaaagtggta 275
Query: 468 aatttcagttatgttctgccgcctccattcagccaggtcaaacacattcattccaaaagc 527
| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 274 gagttcagttatgttctgccgcctccattcagccagatcaaacacgttcattccaaaagc 215
Query: 528 ccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattcaggta 587
||| |||| |||| ||||||||| |||| | |||| ||| |||| ||||||| |||
Sbjct: 214 ccagccacatgcatcggggtcaaaattctttgcaataacaggacttgagaaattcaagta 155
Query: 588 tcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtttaccttcccctt 647
|| || |||||||||| ||||||||||||||||| |||||||| || |||||||||||
Sbjct: 154 acggccaaagcgatggaagctctctccacaagtctctacagcaccattaaccttcccctt 95
Query: 648 catgttgattgaccaaaggccagccagatccttctttactacgatgtcatcatcaagaaa 707
||| | ||||||||| ||||||| | ||||| ||||||| | || ||||||||||
Sbjct: 94 catatcgattgaccagaggccagttatgtcctttcttactactacatcgccatcaagaaa 35
Query: 708 gaccat-cttgtcaagcttt 726
|||||| |||||| ||||||
Sbjct: 34 gaccatncttgtcgagcttt 15
>gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. vulgare cDNA clone HX12J15
5-PRIME, mRNA sequence
Length = 653
Score = 353 bits (178), Expect = 6e-096
Identities = 406/482 (84%)
Strand = Plus / Plus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| |||||||||||||||||||| || |||| || ||||| || || ||||| |||
Sbjct: 164 cttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtactttgac 223
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||||| || |||||||| || |||||||| | ||||||||||| |||||||||||||
Sbjct: 224 cagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccattgtaa 283
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
||||||||||| ||| |||| | |||||| ||| | ||||| || ||||||||||||||
Sbjct: 284 tgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaacctagaccg 343
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|||||||||||||| || |||||| |||||||||||||||||||| |||| || |
Sbjct: 344 agaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagacctgga 403
Query: 409 gggagagtaccaagtttccagagtgatctatcttcattaagcttctgccacgagtgataa 468
|||||||| ||||||||||| || || || || |||||||||||||| |||| ||
Sbjct: 404 gggagagtgccaagtttccatagcagtccgtcctcgttaagcttctgccaaaagtggtag 463
Query: 469 atttcagttatgttctgccgcctccattcagccaggtcaaacacattcattccaaaagcc 528
| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 464 agttcagttatgttctgccgcctccattcagccagatcaaacacgttcattccaaaagcc 523
Query: 529 caaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattcaggtat 588
|| |||| |||| ||||||||| |||| | |||| ||| |||| ||||||| |||
Sbjct: 524 cagccacatgcatcggggtcaaaattctttgcaataacaggacttgagaaattcaagtaa 583
Query: 589 cgatcatagcgatggaaactctctccacaagtctcaacagcaccgtttaccttccccttc 648
|| || |||||||||| ||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 584 cggccaaagcgatggaagctctctccacaagtctctacagcaccattaaccttccccttc 643
Query: 649 at 650
||
Sbjct: 644 at 645
>gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006H13f, mRNA sequence
Length = 1018
Score = 325 bits (164), Expect = 1e-087
Identities = 432/521 (82%), Gaps = 1/521 (0%)
Strand = Plus / Minus
Query: 220 tacttggaccagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttg 279
||||| ||||||||||| ||||||| ||| || || ||||| | ||||||||||| ||
Sbjct: 688 tactttgaccagtagcttcgaaactgggg-aggccnatctcaagccagggcttcaggtgc 630
Query: 280 ccattgtaatgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaa 339
||| |||||||||||||||| ||| |||| | |||||| ||| | ||||| || ||||||
Sbjct: 629 ccantgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaa 570
Query: 340 cctagaccaagaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgacc 399
|||||||| |||||||||||||| || ||| || |||||||||||||||||||| |||
Sbjct: 569 cctagaccgagaacatgccatgatcgatcgagngggaatgtcttgttccagaatgtaacc 510
Query: 400 aaacacaaagggagagtaccaagtttccagagtgatctatcttcattaagcttctgccac 459
| || ||||||||| ||||||||||| || || || || ||||||||||||||
Sbjct: 509 agacctggagggagagtgccaagtttccatagcagtccgtcctcgttaagcttctgccaa 450
Query: 460 gagtgataaatttcagttatgttctgccgcctccattcagccaggtcaaacacattcatt 519
|||| || | ||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 449 aagtggtagagttcagttatgttctgccgcctccattcagccagatcaaacacgttcatt 390
Query: 520 ccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaa 579
||||||||||| |||| |||| ||||||||| |||| | |||| ||| |||| |||
Sbjct: 389 ccaaaagcccagccacatgcatcggggtcaaaattctttgcaataacaggacttgagaaa 330
Query: 580 ttcaggtatcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtttacc 639
|||| ||| || || |||||||||| ||||||||||||||||| |||||||| || |||
Sbjct: 329 ttcaagtaacggccaaagcgatggaagctctctccacaagtctctacagcaccattaacc 270
Query: 640 ttccccttcatgttgattgaccaaaggccagccagatccttctttactacgatgtcatca 699
||||||||||| | ||||||||| ||||||| | ||||| ||||||| | || ||
Sbjct: 269 ttccccttcatatcgattgaccagaggccagttatgtcctttcttactactacatcgcca 210
Query: 700 tcaagaaagaccatcttgtcaagctttggatgcatctcagg 740
|||||||||||||||||||| |||||||||| ||||||||
Sbjct: 209 tcaagaaagaccatcttgtcgagctttggataaatctcagg 169
>gb|BE060385.2|BE060385 HVSMEg0012C17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0012C17f, mRNA sequence
Length = 785
Score = 281 bits (142), Expect = 2e-074
Identities = 349/418 (83%)
Strand = Plus / Minus
Query: 323 taacatggggattgtaacctagaccaagaacatgccatgaccggctgaggggaaatgtct 382
||||||| || |||||||||||||| |||||||||||||| || |||||| |||||||
Sbjct: 586 taacatgtgggttgtaacctagaccgagaacatgccatgatcgatcgagggggaatgtct 527
Query: 383 tgttccagaatgtgaccaaacacaaagggagagtaccaagtttccagagtgatctatctt 442
||||||||||||| |||| || ||||||||| ||||||||||| || || || |
Sbjct: 526 tgttccagaatgtaaccagacctggagggagagtgccaagtttccatagcagtccgtcct 467
Query: 443 cattaagcttctgccacgagtgataaatttcagttatgttctgccgcctccattcagcca 502
| |||||||||||||| |||| || | ||||||||||||||||||||||||||||||||
Sbjct: 466 cgttaagcttctgccaaaagtggtagagttcagttatgttctgccgcctccattcagcca 407
Query: 503 ggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtga 562
| |||||||| ||||||||||||||||| |||| |||| ||||||||| |||| | |
Sbjct: 406 gatcaaacacgttcattccaaaagcccagccacatgcatcggggtcaaaattctttgcaa 347
Query: 563 taatgggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtct 622
||| ||| |||| ||||||| ||| || || |||||||||| ||||||||||||||||
Sbjct: 346 taacaggacttgagaaattcaagtaacggccaaagcgatggaagctctctccacaagtct 287
Query: 623 caacagcaccgtttaccttccccttcatgttgattgaccaaaggccagccagatccttct 682
| |||||||| || |||||||||||||| | ||||||||| ||||||| | |||||
Sbjct: 286 ctacagcaccattaaccttccccttcatatcgattgaccagaggccagttatgtcctttc 227
Query: 683 ttactacgatgtcatcatcaagaaagaccatcttgtcaagctttggatgcatctcagg 740
||||||| | || |||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 226 ttactactacatcgccatcaagaaagaccatcttgtcgagctttggataaatctcagg 169
>gb|AV930935.1|AV930935 AV930935 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25o11 3', mRNA sequence
Length = 495
Score = 206 bits (104), Expect = 8e-052
Identities = 221/260 (85%)
Strand = Plus / Plus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| |||||||||||||||||||| || |||| || ||||| || || ||||| |||
Sbjct: 218 cttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtactttgac 277
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||||| || |||||||| || |||||||| | ||||||||||| |||||||||||||
Sbjct: 278 cagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccattgtaa 337
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
||||||||||| ||| |||| | |||||| ||| | ||||| || ||||||||||||||
Sbjct: 338 tgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaacctagaccg 397
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|||||||||||||| || |||||| |||||||||||||||||||| |||| || |
Sbjct: 398 agaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagacctgga 457
Query: 409 gggagagtaccaagtttcca 428
|||||||| |||||||||||
Sbjct: 458 gggagagtgccaagtttcca 477
>gb|AV931472.1|AV931472 AV931472 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19o15 3', mRNA sequence
Length = 635
Score = 206 bits (104), Expect = 8e-052
Identities = 221/260 (85%)
Strand = Plus / Plus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| |||||||||||||||||||| || |||| || ||||| || || ||||| |||
Sbjct: 336 cttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtactttgac 395
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||||| || |||||||| || |||||||| | ||||||||||| |||||||||||||
Sbjct: 396 cagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccattgtaa 455
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
||||||||||| ||| |||| | |||||| ||| | ||||| || ||||||||||||||
Sbjct: 456 tgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaacctagaccg 515
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|||||||||||||| || |||||| |||||||||||||||||||| |||| || |
Sbjct: 516 agaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagacctgga 575
Query: 409 gggagagtaccaagtttcca 428
|||||||| |||||||||||
Sbjct: 576 gggagagtgccaagtttcca 595
>gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16a24 5', mRNA sequence
Length = 630
Score = 61.9 bits (31), Expect = 3e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 501 caggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaa 551
||||||||||| |||||||||||||||||| |||||||| |||| |||||
Sbjct: 166 caggtcaaacatgttcattccaaaagcccaaccacaagcacgtggatcaaa 116
>gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16a24 3', mRNA sequence
Length = 565
Score = 61.9 bits (31), Expect = 3e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 501 caggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaa 551
||||||||||| |||||||||||||||||| |||||||| |||| |||||
Sbjct: 404 caggtcaaacatgttcattccaaaagcccaaccacaagcacgtggatcaaa 454
>gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10L09
5-PRIME, mRNA sequence
Length = 684
Score = 60.0 bits (30), Expect = 1e-007
Identities = 123/154 (79%)
Strand = Plus / Minus
Query: 491 tccattcagccaggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaa 550
||||||| |||| ||||||| |||||||||| |||||||| |||| |||| || ||||
Sbjct: 456 tccattcttccagatcaaacatattcattccataagcccaaccacatgcattaggatcaa 397
Query: 551 aactcttggtgataatgggatttgaaaaattcaggtatcgatcatagcgatggaaactct 610
|| ||| | ||| | || ||||||||||| ||||| ||| | || ||||||||||
Sbjct: 396 aattctgtgaaatatttgggtttgaaaaattgaggtacttgtcaaatcggtggaaactct 337
Query: 611 ctccacaagtctcaacagcaccgtttaccttccc 644
| ||||| || || |||||||||||||| |||||
Sbjct: 336 ccccacatgtttctacagcaccgtttacattccc 303
>gb|BU979822.1|BU979822 HA17H16r HA Hordeum vulgare subsp. vulgare cDNA clone HA17H16
5-PRIME, mRNA sequence
Length = 554
Score = 60.0 bits (30), Expect = 1e-007
Identities = 123/154 (79%)
Strand = Plus / Minus
Query: 491 tccattcagccaggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaa 550
||||||| |||| ||||||| |||||||||| |||||||| |||| |||| || ||||
Sbjct: 498 tccattcttccagatcaaacatattcattccataagcccaaccacatgcattaggatcaa 439
Query: 551 aactcttggtgataatgggatttgaaaaattcaggtatcgatcatagcgatggaaactct 610
|| ||| | ||| | || ||||||||||| ||||| ||| | || ||||||||||
Sbjct: 438 aattctgtgaaatatttgggtttgaaaaattgaggtacttgtcaaatcggtggaaactct 379
Query: 611 ctccacaagtctcaacagcaccgtttaccttccc 644
| ||||| || || |||||||||||||| |||||
Sbjct: 378 ccccacatgtttctacagcaccgtttacattccc 345
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 52.0 bits (26), Expect = 3e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 30 ggtacctgcccgggcggccgctcgaa 5
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 52.0 bits (26), Expect = 3e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 261 ggtacctgcccgggcggccgctcgaa 286
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 52.0 bits (26), Expect = 3e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 104 ggtacctgcccgggcggccgctcgaa 79
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 52.0 bits (26), Expect = 3e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 104 ggtacctgcccgggcggccgctcgaa 79
>gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025O15f, mRNA sequence
Length = 674
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 502 aggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaa 550
|||||||| | |||||||||||||||||| |||||| || ||||||||
Sbjct: 251 aggtcaaatatattcattccaaaagcccacccacaagtatatgggtcaa 203
>gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016D06f, mRNA sequence
Length = 490
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 502 aggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaa 550
|||||||| | |||||||||||||||||| |||||| || ||||||||
Sbjct: 73 aggtcaaatatattcattccaaaagcccacccacaagtatatgggtcaa 25
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 341 gtacctgcccgggcggccgctcgaa 365
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgctcgaa 265
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 500 gtacctgcccgggcggccgctcgaa 524
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 414 gtacctgcccgggcggccgctcgaa 438
>gb|CA018769.1|CA018769 HV09J15r HV Hordeum vulgare subsp. vulgare cDNA clone HV09J15
5-PRIME, mRNA sequence
Length = 586
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 502 aggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaa 550
|||||||| | |||||||||||||||||| |||||| || ||||||||
Sbjct: 555 aggtcaaatatattcattccaaaagcccacccacaagtatatgggtcaa 507
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-283,
mRNA sequence
Length = 294
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 220 acctgcccgggcggccgctcgaa 242
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_L08 5', mRNA sequence
Length = 202
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
Length = 1285
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgctcga 1
>gb|AL510176.1|AL510176 AL510176 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04C08u 3',
mRNA sequence
Length = 548
Score = 42.1 bits (21), Expect = 0.028
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||| ||| ||||||||||| |||||||||||
Sbjct: 394 ctccagccatggcttcatgttcccattgtaatg 426
>gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd23f10, mRNA
sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.028
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||| ||| ||||||||||| |||||||||||
Sbjct: 400 ctccagccatggcttcatgttcccattgtaatg 432
>gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018F09f, mRNA sequence
Length = 856
Score = 42.1 bits (21), Expect = 0.028
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||| ||| ||||||||||| |||||||||||
Sbjct: 282 ctccagccatggcttcatgttcccattgtaatg 250
>gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078D03F1, mRNA sequence
Length = 447
Score = 42.1 bits (21), Expect = 0.028
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||| ||| ||||||||||| |||||||||||
Sbjct: 150 ctccagccatggcttcatgttcccattgtaatg 118
>gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 5', mRNA sequence
Length = 598
Score = 42.1 bits (21), Expect = 0.028
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||| ||| ||||||||||| |||||||||||
Sbjct: 565 ctccagccatggcttcatgttcccattgtaatg 533
>gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 3', mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.028
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||| ||| ||||||||||| |||||||||||
Sbjct: 398 ctccagccatggcttcatgttcccattgtaatg 430
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgc 793
|||||||||||||||||||||
Sbjct: 274 ggtacctgcccgggcggccgc 254
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgc 793
||||||||||||||||||||
Sbjct: 242 gtacctgcccgggcggccgc 261
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgc 793
|||||||||||||||||||||
Sbjct: 303 ggtacctgcccgggcggccgc 283
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgc 793
||||||||||||||||||||
Sbjct: 271 gtacctgcccgggcggccgc 290
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgct 794
|||||||||||||||||||||
Sbjct: 334 gtacctgcccgggcggccgct 354
>gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_G13 5', mRNA sequence
Length = 523
Score = 42.1 bits (21), Expect = 0.028
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||| ||| ||||||||||| |||||||||||
Sbjct: 202 ctccagccatggcttcatgttcccattgtaatg 170
>gb|BI777829.2|BI777829 EBro08_SQ002_D17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_D17 5', mRNA sequence
Length = 562
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 502 aggtcaaacacattcattccaaaagccca 530
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Sbjct: 487 aggtcaaatatattcattccaaaagccca 459
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,538
Number of Sequences: 312970
Number of extensions: 64538
Number of successful extensions: 16549
Number of sequences better than 0.5: 63
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16449
Number of HSP's gapped (non-prelim): 91
length of query: 798
length of database: 175,134,539
effective HSP length: 19
effective length of query: 779
effective length of database: 169,188,109
effective search space: 131797536911
effective search space used: 131797536911
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)