BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4574602.2.1
(1248 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI952990.1|BI952990 HVSMEm0008P06f Hordeum vulgare green... 115 4e-024
gb|BF262553.2|BF262553 HV_CEa0004F01f Hordeum vulgare seedl... 115 4e-024
gb|BQ762605.1|BQ762605 EBro02_SQ004_N09 _R root, 3 week, hy... 94 1e-017
gb|BQ762734.1|BQ762734 EBro02_SQ004_L21_R root, 3 week, hyd... 94 1e-017
gb|BQ764132.1|BQ764132 EBro03_SQ006_I12_R root, 3 week, wat... 94 1e-017
gb|BQ768001.1|BQ768001 EBro08_SQ010_M09_R root, 3 week, dro... 94 1e-017
gb|CB876733.1|CB876733 HP02D14T HP Hordeum vulgare subsp. v... 94 1e-017
gb|CB877860.1|CB877860 HP06H01T HP Hordeum vulgare subsp. v... 94 1e-017
gb|CB878248.1|CB878248 HP07N14T HP Hordeum vulgare subsp. v... 94 1e-017
gb|BF267787.2|BF267787 HV_CEa0018O07f Hordeum vulgare seedl... 88 8e-016
gb|AL450587.1|AL450587 AL450587 Hordeum vulgare Barke etiol... 86 3e-015
gb|BM371207.2|BM371207 EBro04_SQ003_N15_R root, 3 week, sal... 78 8e-013
gb|CB879431.1|CB879431 HP02D14w HP Hordeum vulgare subsp. v... 72 5e-011
gb|BI952762.1|BI952762 HVSMEm0007K18f Hordeum vulgare green... 56 3e-006
gb|AL499760.1|AL499760 AL499760 Hordeum vulgare Barke etiol... 48 7e-004
gb|AL504101.1|AL504101 AL504101 Hordeum vulgare Barke roots... 48 7e-004
gb|AL505584.1|AL505584 AL505584 Hordeum vulgare Barke roots... 48 7e-004
gb|BF631287.2|BF631287 HVSMEb0015I04f Hordeum vulgare seedl... 48 7e-004
gb|BF257596.2|BF257596 HVSMEf0013E23f Hordeum vulgare seedl... 48 7e-004
gb|BF255528.3|BF255528 HVSMEf0007B16f Hordeum vulgare seedl... 48 7e-004
gb|BG369379.2|BG369379 HVSMEi0024C18f Hordeum vulgare 20 DA... 48 7e-004
gb|BQ471515.1|BQ471515 HV02K17r HV Hordeum vulgare subsp. v... 48 7e-004
gb|BQ471902.1|BQ471902 HV03N04r HV Hordeum vulgare subsp. v... 48 7e-004
gb|BM371947.2|BM371947 EBma08_SQ004_H18_R maternal, 28 DPA,... 48 7e-004
gb|BM443361.2|BM443361 EBro02_SQ003_M08_R root, 3 week, hyd... 48 7e-004
gb|CA018087.1|CA018087 HV07G18r HV Hordeum vulgare subsp. v... 48 7e-004
gb|CB877554.1|CB877554 HP05F18T HP Hordeum vulgare subsp. v... 48 7e-004
gb|BG368670.1|BG368670 HVSMEi0020C19f Hordeum vulgare 20 DA... 46 0.003
gb|BF629020.3|BF629020 HVSMEb0009I24f Hordeum vulgare seedl... 44 0.011
gb|AV933825.1|AV933825 AV933825 K. Sato unpublished cDNA li... 40 0.17
gb|BJ473085.1|BJ473085 BJ473085 K. Sato unpublished cDNA li... 40 0.17
gb|CK125075.1|CK125075 BES1824106i15 BES1824 Hordeum vulgar... 40 0.17
>gb|BI952990.1|BI952990 HVSMEm0008P06f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0008P06f, mRNA sequence
Length = 787
Score = 115 bits (58), Expect = 4e-024
Identities = 150/178 (84%), Gaps = 2/178 (1%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacga 755
|||| |||||||||||||||||| |||||||||||||||| ||||||| || | ||||
Sbjct: 487 gccgctctcgatgtcgaagtcgacgccgtcgagcacggcgtcgccgaggggcctcgacgc 428
Query: 756 -gccgctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcgg 814
| || ||||||| ||| |||| ||||| ||||| | ||| || |||||||||||||
Sbjct: 427 cgacg-tgccgccgaggtagttctcccagaggtacttggcgacctccttggcgtcgtcgg 369
Query: 815 tggaggagaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc 872
|||||||||||||||||||||| | |||||||||||||||| || |||||||||||
Sbjct: 368 cggaggagaggccgtagctgccgacgccgccgccgatggagagcaggaccttgatgcc 311
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
|||| |||||||||||||||||||||||
Sbjct: 140 tgccctcgttgccgttctggccccagta 113
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgt 565
||||||||||||||||| | ||||||||
Sbjct: 675 gggttgttgtagaactgcacccacacgt 648
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 603 cgcgtccgggtaggggcactgcggcgccgccg 634
|||||||||| | |||||||||||||| ||||
Sbjct: 601 cgcgtccgggaatgggcactgcggcgcagccg 570
>gb|BF262553.2|BF262553 HV_CEa0004F01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004F01f, mRNA sequence
Length = 843
Score = 115 bits (58), Expect = 4e-024
Identities = 150/178 (84%), Gaps = 2/178 (1%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacga 755
|||| |||||||||||||||||| |||||||||||||||| ||||||| || | ||||
Sbjct: 480 gccgctctcgatgtcgaagtcgacgccgtcgagcacggcgtcgccgaggggcctagacgc 421
Query: 756 -gccgctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcgg 814
| || ||||||| ||| |||| ||||| ||||| | ||| || |||||||||||||
Sbjct: 420 cgacg-tgccgccgaggtagttctcccagaggtacttggcgacctccttggcgtcgtcgg 362
Query: 815 tggaggagaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc 872
|||||||||||||||||||||| | |||||||||||||||| || |||||||||||
Sbjct: 361 cggaggagaggccgtagctgccgacgccgccgccgatggagagcaggaccttgatgcc 304
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
|||| |||||||||||||||||||||||
Sbjct: 133 tgccctcgttgccgttctggccccagta 106
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 603 cgcgtccgggtaggggcactgcggcgccgccg 634
|||||||||| | |||||||||||||| ||||
Sbjct: 594 cgcgtccgggaatgggcactgcggcgcagccg 563
>gb|BQ762605.1|BQ762605 EBro02_SQ004_N09 _R root, 3 week, hydroponic grown, low nitrogen,
cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA
clone EBro02_SQ004_N09 5', mRNA sequence
Length = 670
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 802 ttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggagaggagc 861
||||||||||||| |||||||||||||||||||||| | |||||||||||||||| ||
Sbjct: 387 ttggcgtcgtcggcggaggagaggccgtagctgccgacgccgccgccgatggagagcagg 328
Query: 862 accttgatgcc 872
|||||||||||
Sbjct: 327 accttgatgcc 317
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 493 gccgctctcgatgtcgaagtcgacgccgtcgagcacggcgtcgccgag 446
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
|||| |||||||||||||||||||||||
Sbjct: 146 tgccctcgttgccgttctggccccagta 119
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 603 cgcgtccgggtaggggcactgcggcgccgccg 634
|||||||||| | |||||||||||||| ||||
Sbjct: 607 cgcgtccgggaacgggcactgcggcgcagccg 576
>gb|BQ762734.1|BQ762734 EBro02_SQ004_L21_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_L21 5', mRNA sequence
Length = 629
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 802 ttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggagaggagc 861
||||||||||||| |||||||||||||||||||||| | |||||||||||||||| ||
Sbjct: 383 ttggcgtcgtcggcggaggagaggccgtagctgccgacgccgccgccgatggagagcagg 324
Query: 862 accttgatgcc 872
|||||||||||
Sbjct: 323 accttgatgcc 313
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 489 gccgctctcgatgtcgaagtcgacgccgtcgagcacggcgtcgccgag 442
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
|||| |||||||||||||||||||||||
Sbjct: 142 tgccctcgttgccgttctggccccagta 115
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 603 cgcgtccgggtaggggcactgcggcgccgccg 634
|||||||||| | |||||||||||||| ||||
Sbjct: 603 cgcgtccgggaacgggcactgcggcgcagccg 572
>gb|BQ764132.1|BQ764132 EBro03_SQ006_I12_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_I12 5', mRNA sequence
Length = 537
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 802 ttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggagaggagc 861
||||||||||||| |||||||||||||||||||||| | |||||||||||||||| ||
Sbjct: 380 ttggcgtcgtcggcggaggagaggccgtagctgccgacgccgccgccgatggagagcagg 321
Query: 862 accttgatgcc 872
|||||||||||
Sbjct: 320 accttgatgcc 310
Score = 65.9 bits (33), Expect = 3e-009
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 486 gccgctctngatgtcgaagtcgacgccgtcgagcacggcgtcgccgag 439
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
|||| |||||||||||||||||||||||
Sbjct: 139 tgccctcgttgccgttctggccccagta 112
>gb|BQ768001.1|BQ768001 EBro08_SQ010_M09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_M09 5', mRNA sequence
Length = 440
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 802 ttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggagaggagc 861
||||||||||||| |||||||||||||||||||||| | |||||||||||||||| ||
Sbjct: 380 ttggcgtcgtcggcggaggagaggccgtagctgccgacgccgccgccgatggagagcagg 321
Query: 862 accttgatgcc 872
|||||||||||
Sbjct: 320 accttgatgcc 310
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
|||| |||||||||||||||||||||||
Sbjct: 139 tgccctcgttgccgttctggccccagta 112
>gb|CB876733.1|CB876733 HP02D14T HP Hordeum vulgare subsp. vulgare cDNA clone HP02D14
5-PRIME, mRNA sequence
Length = 340
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 802 ttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggagaggagc 861
||||||||||||| |||||||||||||||||||||| | |||||||||||||||| ||
Sbjct: 183 ttggcgtcgtcggcggaggagaggccgtagctgccgacgccgccgccgatggagagcagg 124
Query: 862 accttgatgcc 872
|||||||||||
Sbjct: 123 accttgatgcc 113
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 289 gccgctctcgatgtcgaagtcgacgccgtcgagcacggcgtcgccgag 242
>gb|CB877860.1|CB877860 HP06H01T HP Hordeum vulgare subsp. vulgare cDNA clone HP06H01
5-PRIME, mRNA sequence
Length = 509
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 802 ttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggagaggagc 861
||||||||||||| |||||||||||||||||||||| | |||||||||||||||| ||
Sbjct: 364 ttggcgtcgtcggcggaggagaggccgtagctgccgacgccgccgccgatggagagcagg 305
Query: 862 accttgatgcc 872
|||||||||||
Sbjct: 304 accttgatgcc 294
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 470 gccgctctcgatgtcgaagtcgacgccgtcgagcacggcgtcgccgag 423
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
|||| |||||||||||||||||||||||
Sbjct: 123 tgccctcgttgccgttctggccccagta 96
>gb|CB878248.1|CB878248 HP07N14T HP Hordeum vulgare subsp. vulgare cDNA clone HP07N14
5-PRIME, mRNA sequence
Length = 506
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 802 ttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggagaggagc 861
||||||||||||| |||||||||||||||||||||| | |||||||||||||||| ||
Sbjct: 364 ttggcgtcgtcggcggaggagaggccgtagctgccgacgccgccgccgatggagagcagg 305
Query: 862 accttgatgcc 872
|||||||||||
Sbjct: 304 accttgatgcc 294
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 470 gccgctctcgatgtcgaagtcgacgccgtcgagcacggcgtcgccgag 423
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
|||| |||||||||||||||||||||||
Sbjct: 123 tgccctcgttgccgttctggccccagta 96
>gb|BF267787.2|BF267787 HV_CEa0018O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018O07f, mRNA sequence
Length = 828
Score = 87.7 bits (44), Expect = 8e-016
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 761 tgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtggagg 820
||||||| ||| |||| ||||||||||| | ||| || |||| |||||||| |||||
Sbjct: 426 tgccgccgaggtagttctcccacaggtacttggcgacctccttggtgtcgtcggcggagg 367
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc 872
||||||||||||||||| | |||||||||||||||| || |||||||||||
Sbjct: 366 agaggccgtagctgccgacgccgccgccgatggagagcaggaccttgatgcc 315
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
|||| |||||||||||||||||||||||
Sbjct: 144 tgccctcgttgccgttctggccccagta 117
>gb|AL450587.1|AL450587 AL450587 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03E19u 5', mRNA sequence
Length = 511
Score = 85.7 bits (43), Expect = 3e-015
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||| |||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct: 310 tcagacgctatccttcacctgctcgctgtagctgttctgcacgtcgttgtagcggtccca 251
Query: 333 caccatgatgccgccgtagttgc 355
||||||||| || ||||||||||
Sbjct: 250 caccatgatcccaccgtagttgc 228
Score = 61.9 bits (31), Expect = 5e-008
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 471 gctgctggtccacgtgttccatgcgttcaccaggttggtgtcgtccccgttggcgtacgc 530
|||||| |||||||||||||| ||| || ||||||| | |||||||| | ||||||
Sbjct: 109 gctgctcgtccacgtgttccacgcgctctgcaggttgctcgcgtccccgctcgcgtactg 50
Query: 531 gcacccggggttgttgtagaactgtatccacacgttgtcgaac 573
|||| || |||||||||||||| | ||||||||||||||||
Sbjct: 49 gcacggcggattgttgtagaactgcacccacacgttgtcgaac 7
>gb|BM371207.2|BM371207 EBro04_SQ003_N15_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_N15 5', mRNA sequence
Length = 579
Score = 77.8 bits (39), Expect = 8e-013
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 802 ttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggagaggagc 861
||||||||||||| |||||||||||||||||| | | | |||||||||||||||| ||
Sbjct: 176 ttggcgtcgtcggcggaggagaggccgtagctacaggcgccgccgccgatggagagcagg 117
Query: 862 accttgatgcc 872
|||||||||||
Sbjct: 116 accttgatgcc 106
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 282 gccgctctcgatgtcgaagtcgacgccgtcgagcacggcgtcgccgag 235
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaac 573
||||||||||||||||| | |||||||| |||||||
Sbjct: 470 gggttgttgtagaactgcacccacacgtagtcgaac 435
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 603 cgcgtccgggtaggggcactgcggcgccgccg 634
|||||||||| | |||||||||||||| ||||
Sbjct: 396 cgcgtccgggaacgggcactgcggcgcagccg 365
>gb|CB879431.1|CB879431 HP02D14w HP Hordeum vulgare subsp. vulgare cDNA clone HP02D14
3-PRIME, mRNA sequence
Length = 665
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 598 gccgctctcgatgtcgaagtcgacgccgtcgagcacggcgtcgccgag 645
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaac 573
||||||||||||||||| | |||||||| |||||||
Sbjct: 410 gggttgttgtagaactgcacccacacgtagtcgaac 445
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 603 cgcgtccgggtaggggcactgcggcgccgccg 634
|||||||||| | |||||||||||||| ||||
Sbjct: 484 cgcgtccgggaacgggcactgcggcgcagccg 515
>gb|BI952762.1|BI952762 HVSMEm0007K18f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0007K18f, mRNA sequence
Length = 418
Score = 56.0 bits (28), Expect = 3e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
||||||||||||||||||||||||||||
Sbjct: 106 tgccttcgttgccgttctggccccagta 79
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 603 cgcgtccgggtaggggcactgcggcgccgccg 634
|||||||||| | |||||||||||||| ||||
Sbjct: 249 cgcgtccgggaatgggcactgcggcgcagccg 218
>gb|AL499760.1|AL499760 AL499760 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03E19r 3', mRNA sequence
Length = 228
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgtt 320
||||||||| |||||||||| ||||||| ||||||||||||||||
Sbjct: 178 tcagacgctatccttcacctgctcgctgtagctgttctgcacgtcgtt 225
>gb|AL504101.1|AL504101 AL504101 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04D09V 5', mRNA sequence
Length = 700
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcga 727
||||||||||||| |||||||||||||||||
Sbjct: 365 gccgttctcgatgaagaagtcgatgccgtcga 334
>gb|AL505584.1|AL505584 AL505584 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08O17V 5', mRNA sequence
Length = 691
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcga 727
||||||||||||| |||||||||||||||||
Sbjct: 494 gccgttctcgatgaagaagtcgatgccgtcga 463
>gb|BF631287.2|BF631287 HVSMEb0015I04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015I04f, mRNA sequence
Length = 746
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaac 573
||||||||||||||||| | |||||||| |||||||
Sbjct: 122 gggttgttgtagaactgcacccacacgtagtcgaac 87
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 603 cgcgtccgggtaggggcactgcggcgccgccg 634
|||||||||| | |||||||||||||| ||||
Sbjct: 48 cgcgtccgggaatgggcactgcggcgcagccg 17
>gb|BF257596.2|BF257596 HVSMEf0013E23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013E23f, mRNA sequence
Length = 528
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcga 727
||||||||||||| |||||||||||||||||
Sbjct: 468 gccgttctcgatgaagaagtcgatgccgtcga 437
>gb|BF255528.3|BF255528 HVSMEf0007B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007B16f, mRNA sequence
Length = 853
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcga 727
||||||||||||| |||||||||||||||||
Sbjct: 112 gccgttctcgatgaagaagtcgatgccgtcga 81
>gb|BG369379.2|BG369379 HVSMEi0024C18f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024C18f, mRNA sequence
Length = 859
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcga 727
||||||||||||| |||||||||||||||||
Sbjct: 478 gccgttctcgatgaagaagtcgatgccgtcga 447
>gb|BQ471515.1|BQ471515 HV02K17r HV Hordeum vulgare subsp. vulgare cDNA clone HV02K17
5-PRIME, mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcga 727
||||||||||||| |||||||||||||||||
Sbjct: 238 gccgttctcgatgaagaagtcgatgccgtcga 207
>gb|BQ471902.1|BQ471902 HV03N04r HV Hordeum vulgare subsp. vulgare cDNA clone HV03N04
5-PRIME, mRNA sequence
Length = 492
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcga 727
||||||||||||| |||||||||||||||||
Sbjct: 238 gccgttctcgatgaagaagtcgatgccgtcga 207
>gb|BM371947.2|BM371947 EBma08_SQ004_H18_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_H18 5', mRNA sequence
Length = 514
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcga 727
||||||||||||| |||||||||||||||||
Sbjct: 485 gccgttctcgatgaagaagtcgatgccgtcga 454
>gb|BM443361.2|BM443361 EBro02_SQ003_M08_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_M08 5', mRNA sequence
Length = 311
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagta 1067
|||| |||||||||||||||||||||||
Sbjct: 142 tgccctcgttgccgttctggccccagta 115
>gb|CA018087.1|CA018087 HV07G18r HV Hordeum vulgare subsp. vulgare cDNA clone HV07G18
5-PRIME, mRNA sequence
Length = 554
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcga 727
||||||||||||| |||||||||||||||||
Sbjct: 473 gccgttctcgatgaagaagtcgatgccgtcga 442
>gb|CB877554.1|CB877554 HP05F18T HP Hordeum vulgare subsp. vulgare cDNA clone HP05F18
5-PRIME, mRNA sequence
Length = 590
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcga 727
||||||||||||| |||||||||||||||||
Sbjct: 401 gccgttctcgatgaagaagtcgatgccgtcga 370
>gb|BG368670.1|BG368670 HVSMEi0020C19f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020C19f, mRNA sequence
Length = 830
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcg 726
||||||||||||| ||||||||||||||||
Sbjct: 483 gccgttctcgatgaagaagtcgatgccgtcg 453
>gb|BF629020.3|BF629020 HVSMEb0009I24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009I24f, mRNA sequence
Length = 613
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 325 cggtcccacaccatgatgccgccgtagttg 354
|||||||| | |||||||||||||||||||
Sbjct: 369 cggtcccagagcatgatgccgccgtagttg 340
>gb|AV933825.1|AV933825 AV933825 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal9k04 5', mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1108 gcaacgacgacgaggagggc 1127
||||||||||||||||||||
Sbjct: 38 gcaacgacgacgaggagggc 57
>gb|BJ473085.1|BJ473085 BJ473085 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40o08 5', mRNA sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1108 gcaacgacgacgaggagggc 1127
||||||||||||||||||||
Sbjct: 37 gcaacgacgacgaggagggc 56
>gb|CK125075.1|CK125075 BES1824106i15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I156 5-PRIME, mRNA sequence
Length = 829
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1108 gcaacgacgacgaggagggc 1127
||||||||||||||||||||
Sbjct: 2 gcaacgacgacgaggagggc 21
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 189,216
Number of Sequences: 312970
Number of extensions: 189216
Number of successful extensions: 53349
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53239
Number of HSP's gapped (non-prelim): 107
length of query: 1248
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1229
effective length of database: 169,188,109
effective search space: 207932185961
effective search space used: 207932185961
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)