BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573929.2.1
(691 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. v... 242 1e-062
gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. v... 242 1e-062
gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. v... 242 1e-062
gb|CA021085.1|CA021085 HZ39B01r HZ Hordeum vulgare subsp. v... 242 1e-062
gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA li... 236 8e-061
gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Libr... 220 5e-056
gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA,... 137 5e-031
gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. v... 137 5e-031
gb|CA010005.1|CA010005 HT11O08u HT Hordeum vulgare subsp. v... 127 5e-028
gb|CA011362.1|CA011362 HT06C10u HT Hordeum vulgare subsp. v... 127 5e-028
gb|CD662907.1|CD662907 UCRHV18_03cd03_b1 Drought-stressed D... 127 5e-028
gb|CA000191.1|CA000191 HS09J09u HS Hordeum vulgare subsp. v... 96 2e-018
gb|CA001439.1|CA001439 HS17O15u HS Hordeum vulgare subsp. v... 96 2e-018
gb|CA005756.1|CA005756 HU08O17u HU Hordeum vulgare subsp. v... 96 2e-018
gb|CA010057.1|CA010057 HT11K20u HT Hordeum vulgare subsp. v... 96 2e-018
gb|CA013080.1|CA013080 HT07F09r HT Hordeum vulgare subsp. v... 96 2e-018
gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedl... 94 7e-018
gb|BJ449925.1|BJ449925 BJ449925 K. Sato unpublished cDNA li... 94 7e-018
gb|BQ766274.1|BQ766274 EBro08_SQ005_C17_R root, 3 week, dro... 94 7e-018
gb|AJ462109.1|AJ462109 AJ462109 S00002 Hordeum vulgare subs... 90 1e-016
gb|AL501141.1|AL501141 AL501141 Hordeum vulgare Barke roots... 88 4e-016
gb|BJ466608.1|BJ466608 BJ466608 K. Sato unpublished cDNA li... 86 2e-015
gb|BJ457343.1|BJ457343 BJ457343 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA li... 76 2e-012
gb|AV911022.1|AV911022 AV911022 K. Sato unpublished cDNA li... 68 4e-010
gb|BJ452323.1|BJ452323 BJ452323 K. Sato unpublished cDNA li... 68 4e-010
gb|BJ459872.1|BJ459872 BJ459872 K. Sato unpublished cDNA li... 68 4e-010
gb|AV909139.1|AV909139 AV909139 K. Sato unpublished cDNA li... 66 2e-009
>gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. vulgare cDNA clone HF25N16
5-PRIME, mRNA sequence
Length = 633
Score = 242 bits (122), Expect = 1e-062
Identities = 245/286 (85%)
Strand = Plus / Plus
Query: 58 gcagccctgaggaagctctacgaagactccgacaaaataggctgtgaagtgtacaacttg 117
|||||| ||||||||||||||||||| || |||| |||||| || ||||||||||| ||
Sbjct: 168 gcagccttgaggaagctctacgaagattctgacagaatagggtgcgaagtgtacaatctg 227
Query: 118 gggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctggg 177
|| ||||||||||| ||||||||| |||| ||||| || |||||||||||||||| ||
Sbjct: 228 ggcactggaaagggaacgtccgtgctggagatggttgccgcattcgagaaggcttgcgga 287
Query: 178 aagaaaatccctctggtgttcgctgggcgaagacccggagacgcagagatcgtctacgcc 237
||||||||||||||||| | ||||| ||||| | ||||| || |||| || |||||
Sbjct: 288 aagaaaatccctctggtttatgctggaagaagagctggagatgccgagactgtgtacgct 347
Query: 238 gcaactgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatg 297
|| |||||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||
Sbjct: 348 gccactgccaaagcagagaaggagctcaagtggaaggccaagtttggggtggaggagatg 407
Query: 298 tgcagagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 408 tgcagagacctgtggaactgggcaagcaagaacccctacggctacg 453
>gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. vulgare cDNA clone HM11A08
5-PRIME, mRNA sequence
Length = 642
Score = 242 bits (122), Expect = 1e-062
Identities = 245/286 (85%)
Strand = Plus / Plus
Query: 58 gcagccctgaggaagctctacgaagactccgacaaaataggctgtgaagtgtacaacttg 117
|||||| ||||||||||||||||||| || |||| |||||| || ||||||||||| ||
Sbjct: 162 gcagccttgaggaagctctacgaagattctgacagaatagggtgcgaagtgtacaatctg 221
Query: 118 gggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctggg 177
|| ||||||||||| ||||||||| |||| ||||| || |||||||||||||||| ||
Sbjct: 222 ggcactggaaagggaacgtccgtgctggagatggttgccgcattcgagaaggcttgcgga 281
Query: 178 aagaaaatccctctggtgttcgctgggcgaagacccggagacgcagagatcgtctacgcc 237
||||||||||||||||| | ||||| ||||| | ||||| || |||| || |||||
Sbjct: 282 aagaaaatccctctggtttatgctggaagaagagctggagatgccgagactgtgtacgct 341
Query: 238 gcaactgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatg 297
|| |||||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||
Sbjct: 342 gccactgccaaagcagagaaggagctcaagtggaaggccaagtttggggtggaggagatg 401
Query: 298 tgcagagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 402 tgcagagacctgtggaactgggcaagcaagaacccctacggctacg 447
>gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. vulgare cDNA clone HT08A11
5-PRIME, mRNA sequence
Length = 646
Score = 242 bits (122), Expect = 1e-062
Identities = 245/286 (85%)
Strand = Plus / Plus
Query: 58 gcagccctgaggaagctctacgaagactccgacaaaataggctgtgaagtgtacaacttg 117
|||||| ||||||||||||||||||| || |||| |||||| || ||||||||||| ||
Sbjct: 255 gcagccttgaggaagctctacgaagattctgacagaatagggtgcgaagtgtacaatctg 314
Query: 118 gggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctggg 177
|| ||||||||||| ||||||||| |||| ||||| || |||||||||||||||| ||
Sbjct: 315 ggcactggaaagggaacgtccgtgctggagatggttgccgcattcgagaaggcttgcgga 374
Query: 178 aagaaaatccctctggtgttcgctgggcgaagacccggagacgcagagatcgtctacgcc 237
||||||||||||||||| | ||||| ||||| | ||||| || |||| || |||||
Sbjct: 375 aagaaaatccctctggtttatgctggaagaagagctggagatgccgagactgtgtacgct 434
Query: 238 gcaactgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatg 297
|| |||||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||
Sbjct: 435 gccactgccaaagcagagaaggagctcaagtggaaggccaagtttggggtggaggagatg 494
Query: 298 tgcagagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 495 tgcagagacctgtggaactgggcaagcaagaacccctacggctacg 540
>gb|CA021085.1|CA021085 HZ39B01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39B01
5-PRIME, mRNA sequence
Length = 539
Score = 242 bits (122), Expect = 1e-062
Identities = 245/286 (85%)
Strand = Plus / Plus
Query: 58 gcagccctgaggaagctctacgaagactccgacaaaataggctgtgaagtgtacaacttg 117
|||||| ||||||||||||||||||| || |||| |||||| || ||||||||||| ||
Sbjct: 13 gcagccttgaggaagctctacgaagattctgacagaatagggtgcgaagtgtacaatctg 72
Query: 118 gggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctggg 177
|| ||||||||||| ||||||||| |||| ||||| || |||||||||||||||| ||
Sbjct: 73 ggcactggaaagggaacgtccgtgctggagatggttgccgcattcgagaaggcttgcgga 132
Query: 178 aagaaaatccctctggtgttcgctgggcgaagacccggagacgcagagatcgtctacgcc 237
||||||||||||||||| | ||||| ||||| | ||||| || |||| || |||||
Sbjct: 133 aagaaaatccctctggtttatgctggaagaagagctggagatgccgagactgtgtacgct 192
Query: 238 gcaactgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatg 297
|| |||||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||
Sbjct: 193 gccactgccaaagcagagaaggagctcaagtggaaggccaagtttggggtggaggagatg 252
Query: 298 tgcagagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 253 tgcagagacctgtggaactgggcaagcaagaacccctacggctacg 298
>gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8e17 3', mRNA sequence
Length = 719
Score = 236 bits (119), Expect = 8e-061
Identities = 244/286 (85%)
Strand = Plus / Minus
Query: 58 gcagccctgaggaagctctacgaagactccgacaaaataggctgtgaagtgtacaacttg 117
|||||| |||| |||||||||||||| || |||| |||||| || ||||||||||| ||
Sbjct: 625 gcagccttgagnaagctctacgaagattctgacagaatagggtgcgaagtgtacaatctg 566
Query: 118 gggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctggg 177
|| ||||||||||| ||||||||| |||| ||||| || |||||||||||||||| ||
Sbjct: 565 ggcactggaaagggaacgtccgtgctggagatggttgccgcattcgagaaggcttgcgga 506
Query: 178 aagaaaatccctctggtgttcgctgggcgaagacccggagacgcagagatcgtctacgcc 237
||||||||||||||||| | ||||| ||||| | ||||| || |||| || |||||
Sbjct: 505 aagaaaatccctctggtttatgctggaagaagagctggagatgccgagactgtgtacgct 446
Query: 238 gcaactgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatg 297
|| |||||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||
Sbjct: 445 gccactgccaaagcagagaaggagctcaagtggaaggccaagtttggggtggaggagatg 386
Query: 298 tgcagagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 385 tgcagagacctgtggaactgggcaagcaagaacccctacggctacg 340
>gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.H08, mRNA sequence
Length = 1212
Score = 220 bits (111), Expect = 5e-056
Identities = 234/275 (85%)
Strand = Plus / Plus
Query: 58 gcagccctgaggaagctctacgaagactccgacaaaataggctgtgaagtgtacaacttg 117
|||||| ||||||||||||||||||| || |||| |||||| || ||||||||||| ||
Sbjct: 368 gcagccttgaggaagctctacgaagattctgacagaatagggtgcgaagtgtacaatctg 427
Query: 118 gggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctggg 177
|| ||||||||||| ||||||||| |||| ||||| || |||||||||||||||| ||
Sbjct: 428 ggcactggaaagggaacgtccgtgctggagatggttgccgcattcgagaaggcttgcgga 487
Query: 178 aagaaaatccctctggtgttcgctgggcgaagacccggagacgcagagatcgtctacgcc 237
||||||||||||||||| | ||||| ||||| | ||||| || |||| || |||||
Sbjct: 488 aagaaaatccctctggtttatgctggaagaagagctggagatgccgagactgtgtacgct 547
Query: 238 gcaactgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatg 297
|| |||||||| ||||||||||||||||| ||||||||||||| || | |||||||||
Sbjct: 548 gccactgccaaagcagagaaggagctcaagtggaaggccaagtttcggctggaggagatg 607
Query: 298 tgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| |||||||||| ||| |||||||||||
Sbjct: 608 tgcagagacctgtggaacttggcaagcaagaaccc 642
>gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_C16 5', mRNA sequence
Length = 398
Score = 137 bits (69), Expect = 5e-031
Identities = 120/137 (87%)
Strand = Plus / Plus
Query: 58 gcagccctgaggaagctctacgaagactccgacaaaataggctgtgaagtgtacaacttg 117
|||||| ||||||||||||||||||| || |||| |||||| || ||||||||||| ||
Sbjct: 211 gcagccttgaggaagctctacgaagattctgacagaatagggtgcgaagtgtacaatctg 270
Query: 118 gggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctggg 177
|| ||||||||||| ||||||||| |||| ||||| || |||||||||||||||| ||
Sbjct: 271 ggcactggaaagggaacgtccgtgctggagatggttgccgcattcgagaaggcttgcgga 330
Query: 178 aagaaaatccctctggt 194
|||||||||||||||||
Sbjct: 331 aagaaaatccctctggt 347
>gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. vulgare cDNA clone HB19L11
5-PRIME, mRNA sequence
Length = 569
Score = 137 bits (69), Expect = 5e-031
Identities = 120/137 (87%)
Strand = Plus / Plus
Query: 58 gcagccctgaggaagctctacgaagactccgacaaaataggctgtgaagtgtacaacttg 117
|||||| ||||||||||||||||||| || |||| |||||| || ||||||||||| ||
Sbjct: 424 gcagccttgaggaagctctacgaagattctgacagaatagggtgcgaagtgtacaatctg 483
Query: 118 gggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctggg 177
|| ||||||||||| ||||||||| |||| ||||| || |||||||||||||||| ||
Sbjct: 484 ggcactggaaagggaacgtccgtgctggagatggttgccgcattcgagaaggcttgcgga 543
Query: 178 aagaaaatccctctggt 194
|||||||||||||||||
Sbjct: 544 aagaaaatccctctggt 560
>gb|CA010005.1|CA010005 HT11O08u HT Hordeum vulgare subsp. vulgare cDNA clone HT11O08
3-PRIME, mRNA sequence
Length = 477
Score = 127 bits (64), Expect = 5e-028
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 232 tacgccgcaactgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgag 291
||||| || |||||||| ||||||||||||||||| ||||||||||||| ||| | |||
Sbjct: 468 tacgctgccactgccaaagcagagaaggagctcaagtggaaggccaagtttggggtggag 409
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|||||||||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 408 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacg 357
>gb|CA011362.1|CA011362 HT06C10u HT Hordeum vulgare subsp. vulgare cDNA clone HT06C10
3-PRIME, mRNA sequence
Length = 503
Score = 127 bits (64), Expect = 5e-028
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 232 tacgccgcaactgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgag 291
||||| || |||||||| ||||||||||||||||| ||||||||||||| ||| | |||
Sbjct: 464 tacgctgccactgccaaagcagagaaggagctcaagtggaaggccaagtttggggtggag 405
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|||||||||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 404 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacg 353
>gb|CD662907.1|CD662907 UCRHV18_03cd03_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_03cd03, mRNA sequence
Length = 525
Score = 127 bits (64), Expect = 5e-028
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 232 tacgccgcaactgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgag 291
||||| || |||||||| ||||||||||||||||| ||||||||||||| ||| | |||
Sbjct: 479 tacgctgccactgccaaagcagagaaggagctcaagtggaaggccaagtttggggtggag 420
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|||||||||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 419 gagatgtgcagagacctgtggaactgggcaagcaagaacccctacggctacg 368
>gb|CA000191.1|CA000191 HS09J09u HS Hordeum vulgare subsp. vulgare cDNA clone HS09J09
3-PRIME, mRNA sequence
Length = 549
Score = 95.6 bits (48), Expect = 2e-018
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 244 gccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatgtgcaga 303
|||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 323 gccaaggccgagcaggagctcggctggagggccaagtacgggatcgaggagatgtgcagg 264
Query: 304 gatctgtggaactgggcgagcaagaacccgta 335
|| | |||||||||||| || |||||||||||
Sbjct: 263 gaccagtggaactgggccaggaagaacccgta 232
>gb|CA001439.1|CA001439 HS17O15u HS Hordeum vulgare subsp. vulgare cDNA clone HS17O15
3-PRIME, mRNA sequence
Length = 550
Score = 95.6 bits (48), Expect = 2e-018
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 244 gccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatgtgcaga 303
|||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 474 gccaaggccgagcaggagctcggctggagggccaagtacgggatcgaggagatgtgcagg 415
Query: 304 gatctgtggaactgggcgagcaagaacccgta 335
|| | |||||||||||| || |||||||||||
Sbjct: 414 gaccagtggaactgggccaggaagaacccgta 383
>gb|CA005756.1|CA005756 HU08O17u HU Hordeum vulgare subsp. vulgare cDNA clone HU08O17
3-PRIME, mRNA sequence
Length = 350
Score = 95.6 bits (48), Expect = 2e-018
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 244 gccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatgtgcaga 303
|||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 332 gccaaggccgagcaggagctcggctggagggccaagtacgggatcgaggagatgtgcagg 273
Query: 304 gatctgtggaactgggcgagcaagaacccgta 335
|| | |||||||||||| || |||||||||||
Sbjct: 272 gaccagtggaactgggccaggaagaacccgta 241
>gb|CA010057.1|CA010057 HT11K20u HT Hordeum vulgare subsp. vulgare cDNA clone HT11K20
3-PRIME, mRNA sequence
Length = 356
Score = 95.6 bits (48), Expect = 2e-018
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 244 gccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatgtgcaga 303
|||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 281 gccaaggccgagcaggagctcggctggagggccaagtacgggatcgaggagatgtgcagg 222
Query: 304 gatctgtggaactgggcgagcaagaacccgta 335
|| | |||||||||||| || |||||||||||
Sbjct: 221 gaccagtggaactgggccaggaagaacccgta 190
>gb|CA013080.1|CA013080 HT07F09r HT Hordeum vulgare subsp. vulgare cDNA clone HT07F09
5-PRIME, mRNA sequence
Length = 637
Score = 95.6 bits (48), Expect = 2e-018
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 244 gccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatgtgcaga 303
|||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 448 gccaaggccgagcaggagctcggctggagggccaagtacgggatcgaggagatgtgcagg 507
Query: 304 gatctgtggaactgggcgagcaagaacccgta 335
|| | |||||||||||| || |||||||||||
Sbjct: 508 gaccagtggaactgggccaggaagaacccgta 539
>gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E08f, mRNA sequence
Length = 790
Score = 93.7 bits (47), Expect = 7e-018
Identities = 179/223 (80%)
Strand = Plus / Plus
Query: 121 actggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctgggaag 180
|||||||| |||||||| |||||||| || || ||||||||||||||||||||| |||
Sbjct: 316 actggaaaagggacgtcagtgttggagatagtaaatgcattcgagaaggcttctggaaag 375
Query: 181 aaaatccctctggtgttcgctgggcgaagacccggagacgcagagatcgtctacgccgca 240
|||||||| ||||| ||| | ||| | || || ||||| ||||| ||| || | |
Sbjct: 376 aaaatcccgctggtcgtcggtcagcgccgccctggtgacgcggagattctctttgcagga 435
Query: 241 actgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatgtgc 300
|||| || ||||||| || ||||| ||||| || ||||| || ||| ||||||||||
Sbjct: 436 actggtaaagcagagagagaactcaactggaaagcaaagtatggcatcacggagatgtgc 495
Query: 301 agagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|| || | |||||||||||| ||||||||||| ||||||||||
Sbjct: 496 agggaccagtggaactgggctagcaagaacccttacgggtacg 538
>gb|BJ449925.1|BJ449925 BJ449925 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27e10 5', mRNA sequence
Length = 588
Score = 93.7 bits (47), Expect = 7e-018
Identities = 179/223 (80%)
Strand = Plus / Plus
Query: 121 actggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctgggaag 180
|||||||| |||||||| |||||||| || || ||||||||||||||||||||| |||
Sbjct: 30 actggaaaagggacgtcagtgttggagatagtaaatgcattcgagaaggcttctggaaag 89
Query: 181 aaaatccctctggtgttcgctgggcgaagacccggagacgcagagatcgtctacgccgca 240
|||||||| ||||| ||| | ||| | || || ||||| ||||| ||| || | |
Sbjct: 90 aaaatcccgctggtcgtcggtcagcgccgccctggtgacgccgagattctctttgcagga 149
Query: 241 actgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatgtgc 300
|||| || ||||||| || ||||| ||||| || ||||| || ||| ||||||||||
Sbjct: 150 actggtaaagcagagagagaactcaactggaaagcaaagtatggcatcacggagatgtgc 209
Query: 301 agagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|| || | |||||||||||| ||||||||||| ||||||||||
Sbjct: 210 agggaccagtggaactgggctagcaagaacccttacgggtacg 252
>gb|BQ766274.1|BQ766274 EBro08_SQ005_C17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_C17 5', mRNA sequence
Length = 639
Score = 93.7 bits (47), Expect = 7e-018
Identities = 179/223 (80%)
Strand = Plus / Plus
Query: 121 actggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctgggaag 180
|||||||| |||||||| |||||||| || || ||||||||||||||||||||| |||
Sbjct: 7 actggaaaagggacgtcagtgttggagatagtaaatgcattcgagaaggcttctggaaag 66
Query: 181 aaaatccctctggtgttcgctgggcgaagacccggagacgcagagatcgtctacgccgca 240
|||||||| ||||| ||| | ||| | || || ||||| ||||| ||| || | |
Sbjct: 67 aaaatcccgctggtcgtcggtcagcgccgccctggtgacgcggagattctctttgcagga 126
Query: 241 actgccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatgtgc 300
|||| || ||||||| || ||||| ||||| || ||||| || ||| ||||||||||
Sbjct: 127 actggtaaagcagagagagaactcaactggaaagcaaagtatggcatcacggagatgtgc 186
Query: 301 agagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|| || | |||||||||||| ||||||||||| ||||||||||
Sbjct: 187 agggaccagtggaactgggctagcaagaacccttacgggtacg 229
>gb|AJ462109.1|AJ462109 AJ462109 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200070B09F1, mRNA sequence
Length = 360
Score = 89.7 bits (45), Expect = 1e-016
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 244 gccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatgtgcaga 303
|||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 160 gccaaggccgagcaggagctcggctggagggccaagtacgggatcgaggagatgtgcagg 219
Query: 304 gatctgtggaactgggcgagcaagaaccc 332
|| | |||||||||||| || ||||||||
Sbjct: 220 gaccagtggaactgggccaggaagaaccc 248
>gb|AL501141.1|AL501141 AL501141 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03D01u 3', mRNA sequence
Length = 468
Score = 87.7 bits (44), Expect = 4e-016
Identities = 78/88 (88%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 257 aggagctcaaatggaaggccaagtac-gggatcgaggagatgtgcagagatctgtggaac 315
|||||||||| ||||||||||||| ||| | ||||||||||||||||| |||||||||
Sbjct: 468 aggagctcaagtggaaggccaagttttggggtggaggagatgtgcagagacctgtggaac 409
Query: 316 tgggcgagcaagaacccgtacgggtacg 343
||||| ||||||||||| ||||| ||||
Sbjct: 408 tgggcaagcaagaacccctacggctacg 381
>gb|BJ466608.1|BJ466608 BJ466608 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p11 3', mRNA sequence
Length = 667
Score = 85.7 bits (43), Expect = 2e-015
Identities = 175/219 (79%)
Strand = Plus / Minus
Query: 125 gaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctgggaagaaaa 184
|||| |||||||| |||||||| || || ||||||||||||||||||||| |||||||
Sbjct: 667 gaaaagggacgtcagtgttggagatagtaaatgcattcgagaaggcttctggaaagaaaa 608
Query: 185 tccctctggtgttcgctgggcgaagacccggagacgcagagatcgtctacgccgcaactg 244
|||| ||||| ||| | ||| | || || ||||| ||||| ||| || | |||||
Sbjct: 607 tcccgctggtcgtcggtcagcgccgccctggtgacgcggagattctctttgcaggaactg 548
Query: 245 ccaaggcagagaaggagctcaaatggaaggccaagtacgggatcgaggagatgtgcagag 304
|| ||||||| || ||||| ||||| || ||||| || ||| |||||||||||| |
Sbjct: 547 gtaaagcagagagagaactcaactggaaagcaaagtatggcatcacggagatgtgcaggg 488
Query: 305 atctgtggaactgggcgagcaagaacccgtacgggtacg 343
| | |||||||||||| ||||||||||| ||||||||||
Sbjct: 487 accagtggaactgggctagcaagaacccttacgggtacg 449
>gb|BJ457343.1|BJ457343 BJ457343 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27e10 3', mRNA sequence
Length = 579
Score = 79.8 bits (40), Expect = 1e-013
Identities = 151/188 (80%)
Strand = Plus / Minus
Query: 156 tgcattcgagaaggcttctgggaagaaaatccctctggtgttcgctgggcgaagacccgg 215
||||||||||||||||||||| ||||||||||| ||||| ||| | ||| | || ||
Sbjct: 558 tgcattcgagaaggcttctggaaagaaaatcccgctggtcgtcggtcagcgccgccctgg 499
Query: 216 agacgcagagatcgtctacgccgcaactgccaaggcagagaaggagctcaaatggaaggc 275
||||| ||||| ||| || | ||||| || ||||||| || ||||| ||||| ||
Sbjct: 498 tgacgccgagattctctttgcaggaactggtaaagcagagagagaactcaactggaaagc 439
Query: 276 caagtacgggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgta 335
||||| || ||| |||||||||||| || | |||||||||||| ||||||||||| ||
Sbjct: 438 aaagtatggcatcacggagatgtgcagggaccagtggaactgggctagcaagaaccctta 379
Query: 336 cgggtacg 343
||||||||
Sbjct: 378 cgggtacg 371
>gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p11 5', mRNA sequence
Length = 540
Score = 75.8 bits (38), Expect = 2e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 121 actggaaaggggacgtccgtgttggaaatggtggctgcattcgagaaggcttctgggaag 180
|||||||| |||||||| |||||||| || || ||||||||||||||||||||| |||
Sbjct: 340 actggaaaagggacgtcagtgttggagatagtaaatgcattcgagaaggcttctggaaag 399
Query: 181 aaaatccctctggt 194
|||||||| |||||
Sbjct: 400 aaaatcccgctggt 413
>gb|AV911022.1|AV911022 AV911022 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l22 3', mRNA sequence
Length = 468
Score = 67.9 bits (34), Expect = 4e-010
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 262 ctcaaatggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcg 321
||||| ||||| || ||||| || ||| |||||||||||| || | ||||||||||||
Sbjct: 456 ctcaactggaaagcaaagtatggcatcacggagatgtgcagggaccagtggaactgggct 397
Query: 322 agcaagaacccgtacgggtacg 343
||||||||||| ||||||||||
Sbjct: 396 agcaagaacccttacgggtacg 375
>gb|BJ452323.1|BJ452323 BJ452323 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j12 5', mRNA sequence
Length = 492
Score = 67.9 bits (34), Expect = 4e-010
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 262 ctcaaatggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcg 321
||||| ||||| || ||||| || ||| |||||||||||| || | ||||||||||||
Sbjct: 3 ctcaactggaaagcaaagtatggcatcacggagatgtgcagggaccagtggaactgggct 62
Query: 322 agcaagaacccgtacgggtacg 343
||||||||||| ||||||||||
Sbjct: 63 agcaagaacccttacgggtacg 84
>gb|BJ459872.1|BJ459872 BJ459872 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j12 3', mRNA sequence
Length = 469
Score = 67.9 bits (34), Expect = 4e-010
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 262 ctcaaatggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcg 321
||||| ||||| || ||||| || ||| |||||||||||| || | ||||||||||||
Sbjct: 457 ctcaactggaaagcaaagtatggcatcacggagatgtgcagggaccagtggaactgggct 398
Query: 322 agcaagaacccgtacgggtacg 343
||||||||||| ||||||||||
Sbjct: 397 agcaagaacccttacgggtacg 376
>gb|AV909139.1|AV909139 AV909139 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l22 5', mRNA sequence
Length = 488
Score = 65.9 bits (33), Expect = 2e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 291 ggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgggtacg 343
|||||||||||| || | |||||||||||| ||||||||||| ||||||||||
Sbjct: 28 ggagatgtgcagggaccagtggaactgggctagcaagaacccttacgggtacg 80
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,651
Number of Sequences: 312970
Number of extensions: 68651
Number of successful extensions: 18280
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18241
Number of HSP's gapped (non-prelim): 37
length of query: 691
length of database: 175,134,539
effective HSP length: 19
effective length of query: 672
effective length of database: 169,188,109
effective search space: 113694409248
effective search space used: 113694409248
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)