BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4548790.2.1
(1044 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 464 e-129
gb|BG301240.1|BG301240 HVSMEb0020C04f Hordeum vulgare seedl... 226 1e-057
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 170 6e-041
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 165 4e-039
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 157 9e-037
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 153 1e-035
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 139 2e-031
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 109 2e-022
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 107 7e-022
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 107 7e-022
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 107 7e-022
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 107 7e-022
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 100 2e-019
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 100 2e-019
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 100 2e-019
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 100 2e-019
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 100 2e-019
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 100 2e-019
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 94 1e-017
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 94 1e-017
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 92 4e-017
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 92 4e-017
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 88 7e-016
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 88 7e-016
gb|BQ461095.1|BQ461095 HE01D18r HE Hordeum vulgare subsp. v... 88 7e-016
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 88 7e-016
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 88 7e-016
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 88 7e-016
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 86 3e-015
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 86 3e-015
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 86 3e-015
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 86 3e-015
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 86 3e-015
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 86 3e-015
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 86 3e-015
gb|CA002659.1|CA002659 HS08C15r HS Hordeum vulgare subsp. v... 86 3e-015
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 84 1e-014
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 80 2e-013
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 80 2e-013
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 78 7e-013
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 78 7e-013
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 76 3e-012
gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachi... 76 3e-012
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 74 1e-011
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 74 1e-011
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 74 1e-011
gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachi... 74 1e-011
gb|BI947183.1|BI947183 HVSMEl0004B07f Hordeum vulgare spike... 72 4e-011
gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachi... 72 4e-011
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 72 4e-011
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 70 2e-010
gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA li... 70 2e-010
gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA li... 70 2e-010
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 70 2e-010
gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedl... 68 6e-010
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 68 6e-010
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 68 6e-010
gb|BQ660413.1|BQ660413 HI02G15u HI Hordeum vulgare subsp. v... 68 6e-010
gb|AL500971.1|AL500971 AL500971 Hordeum vulgare Barke roots... 64 1e-008
gb|BI947184.1|BI947184 HVSMEl0004B08f Hordeum vulgare spike... 64 1e-008
gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedl... 62 4e-008
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 60 2e-007
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 58 6e-007
gb|BU999110.1|BU999110 HI13E18r HI Hordeum vulgare subsp. v... 58 6e-007
gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedl... 56 2e-006
gb|AV917956.1|AV917956 AV917956 K. Sato unpublished cDNA li... 56 2e-006
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 56 2e-006
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 56 2e-006
gb|BQ468086.1|BQ468086 HR01O13r HR Hordeum vulgare subsp. v... 56 2e-006
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 56 2e-006
gb|CA001586.1|CA001586 HS17G02u HS Hordeum vulgare subsp. v... 56 2e-006
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 56 2e-006
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 56 2e-006
gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. v... 54 1e-005
gb|BI959974.1|BI959974 HVSMEn0022L12f Hordeum vulgare rachi... 52 4e-005
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 52 4e-005
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 52 4e-005
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 50 1e-004
gb|CA029290.1|CA029290 HZ64M12r HZ Hordeum vulgare subsp. v... 50 1e-004
gb|BF257377.2|BF257377 HVSMEf0012L15f Hordeum vulgare seedl... 48 6e-004
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 48 6e-004
gb|CA020099.1|CA020099 HV14F10r HV Hordeum vulgare subsp. v... 48 6e-004
gb|BF622348.3|BF622348 HVSMEa0002O10f Hordeum vulgare seedl... 46 0.002
gb|BQ760589.1|BQ760589 EBro03_SQ001_N06_R root, 3 week, wat... 46 0.002
gb|CA018512.1|CA018512 HV08N14r HV Hordeum vulgare subsp. v... 44 0.009
gb|BF253545.2|BF253545 HVSMEf0001D17f Hordeum vulgare seedl... 42 0.036
gb|BI950803.1|BI950803 HVSMEl0023D24f Hordeum vulgare spike... 42 0.036
gb|AV917957.1|AV917957 AV917957 K. Sato unpublished cDNA li... 42 0.036
gb|AL505514.1|AL505514 AL505514 Hordeum vulgare Barke roots... 40 0.14
gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare s... 40 0.14
gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare s... 40 0.14
gb|CA006089.1|CA006089 HU05D17u HU Hordeum vulgare subsp. v... 40 0.14
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 464 bits (234), Expect = e-129
Identities = 367/410 (89%), Gaps = 1/410 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
||||||||||||| |||||||||||||||||||| | ||| ||||||||||| ||||
Sbjct: 188 gcgcgcacgccaccttctacggcggcagcgacgcctccggcaccatgggcggggcgtgcg 247
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 248 ggtacgggaacctgt-acagccaggggtacggggtgaataacgcggcgctgagcacggcg 306
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| ||||||||| ||||||||||||||||||||||| |||||| | | |||||
Sbjct: 307 ctgttcaacgaggggcagagctgcggcgcgtgcttcgagatccggtgcgtgaaccagccg 366
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|| ||| |||||||| || |||| ||| |||||| | ||||| |||||||||||||||
Sbjct: 367 ggctgggcgtggtgcctcccggggaagccgtccatcgtcgtcaccgccaccaacttctgc 426
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 427 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaaccctccccgcccccac 486
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||
Sbjct: 487 ttcgacctcgccatgcccatgttcctccacatggcccagtaccgagccggcatcgtcccc 546
Query: 386 gtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcggttcac 435
|||| ||||||||||||| ||||||| ||||| || ||||||||||||||
Sbjct: 547 gtctgctaccgccgggtggcgtgccggaagtcgggaggggtgcggttcac 596
>gb|BG301240.1|BG301240 HVSMEb0020C04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020C04f, mRNA sequence
Length = 906
Score = 226 bits (114), Expect = 1e-057
Identities = 192/218 (88%)
Strand = Plus / Plus
Query: 493 ggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgcccatgtccaggaa 552
|||| ||||||| || |||| |||| | |||||||||||||| |||||||||| | ||
Sbjct: 1 ggacctggtgcgggccagcgcgaaggggtccagcaccgggtggatgcccatgtcgcgcaa 60
Query: 553 ctggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgcgt 612
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 61 ctggggccagaactggcagtccaacgccatgctcgtcggccagacgctctccttccgcgt 120
Query: 613 caccgccagcgaccgccgcacctccacctcctggaacgccgccccgagcacctggcagtt 672
||||| |||||||| || |||||||||||||||||||||||||| | || ||||| ||
Sbjct: 121 aaccgctagcgaccgacgaacctccacctcctggaacgccgcccccaacaactggcgctt 180
Query: 673 cggccagaccttcgagggcaagaacttcagggtctgat 710
||| |||||||| |||||||||||||||| || |||||
Sbjct: 181 cggacagacctttgagggcaagaacttcaaggactgat 218
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 170 bits (86), Expect = 6e-041
Identities = 212/254 (83%)
Strand = Plus / Plus
Query: 236 tccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgac 295
|||||| |||| || |||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 169 tccatcatggtgaccgccaccaacttctgcccgcccaactacggcctccccagcgacgac 228
Query: 296 ggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccac 355
|||||||||||||||||||| ||||| ||||||||| | ||| ||| |||||||||
Sbjct: 229 ggcggctggtgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccac 288
Query: 356 atcgccgagtaccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaag 415
||||| ||||||||||||||||||| |||||||||||| | ||||||||||| |||
Sbjct: 289 atcgcgcagtaccgcgccggcatcgtacccgtctcctacagaagggtgccgtgcgtgaag 348
Query: 416 tccggcggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacg 475
|| || | |||||||| ||||||||| | |||||||||||||||||| | ||
Sbjct: 349 aaggggggcatccggttcaccatcaacggccactcctacttcaacctggtgctggtgacc 408
Query: 476 aacgtggccggcgc 489
||||||||||||||
Sbjct: 409 aacgtggccggcgc 422
Score = 77.8 bits (39), Expect = 7e-013
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 70 atgggcggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgc 129
||||||||||| ||||||||||| ||||||| ||||| ||||||||| ||||| ||
Sbjct: 16 atgggcggggcgtgcgggtacggtaacctgt-acagcactgggtacggcacgaacacggc 74
Query: 130 ggcgctgagcacggcgctgttcgacga 156
|||||||||||||||||||||| ||||
Sbjct: 75 ggcgctgagcacggcgctgttcaacga 101
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 165 bits (83), Expect = 4e-039
Identities = 211/254 (83%)
Strand = Plus / Plus
Query: 236 tccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgac 295
|||||| |||| || |||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 387 tccatcatggtgaccgccaccaacttctgcccgcccaactacggcctccccagcgacgac 446
Query: 296 ggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccac 355
|||||||||||||||||||| ||||| ||||||||| | ||| ||| |||||||||
Sbjct: 447 ggcggctggtgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccac 506
Query: 356 atcgccgagtaccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaag 415
||||| ||||||||||||||||||| |||||||||||| | ||||||||||| |||
Sbjct: 507 atcgcgcagtaccgcgccggcatcgtacccgtctcctacagaagggtgccgtgcgtgaag 566
Query: 416 tccggcggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacg 475
|| || | |||||||| ||||||||| | |||||||||||||||||| | ||
Sbjct: 567 aaggggggcatccggttcaccatcaacggccactcctacttcaacctggtgctggtgacc 626
Query: 476 aacgtggccggcgc 489
||||||| ||||||
Sbjct: 627 aacgtggncggcgc 640
Score = 85.7 bits (43), Expect = 3e-015
Identities = 104/123 (84%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 34 gccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacggc 93
||||| |||||||||||| ||||||| | ||| ||||||||||| |||||||||||
Sbjct: 198 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 257
Query: 94 aacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcga 153
||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||| |
Sbjct: 258 aacctgt-acagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaa 316
Query: 154 cga 156
|||
Sbjct: 317 cga 319
>gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013B19f, mRNA sequence
Length = 626
Score = 157 bits (79), Expect = 9e-037
Identities = 139/159 (87%)
Strand = Plus / Plus
Query: 236 tccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgac 295
|||||| |||| || |||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 111 tccatcatggtgaccgccaccaacttctgcccgcccaactacggcctccccagcgacgac 170
Query: 296 ggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccac 355
|||||||||||||||||||| ||||| ||||||||| | ||| ||| |||||||||
Sbjct: 171 ggcggctggtgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccac 230
Query: 356 atcgccgagtaccgcgccggcatcgtgcccgtctcctac 394
||||| ||||||||||||||||||| ||||||||||||
Sbjct: 231 atcgcgcagtaccgcgccggcatcgtacccgtctcctac 269
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 128 gcggcgctgagcacggcgctgttcgacga 156
|||||||||||||||||||||||| ||||
Sbjct: 15 gcggcgctgagcacggcgctgttcaacga 43
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 153 bits (77), Expect = 1e-035
Identities = 137/157 (87%)
Strand = Plus / Plus
Query: 236 tccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgac 295
|||||| |||| || |||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 366 tccatcatggtgaccgccaccaacttctgcccgcccaactacggcctccccagcgacgac 425
Query: 296 ggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccac 355
|||||||||||||||||||| ||||| ||||||||| | ||| ||| |||||||||
Sbjct: 426 ggcggctggtgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccac 485
Query: 356 atcgccgagtaccgcgccggcatcgtgcccgtctcct 392
||||| ||||||||||||||||||| ||||||||||
Sbjct: 486 atcgcgcagtaccgcgccggcatcgtacccgtctcct 522
Score = 85.7 bits (43), Expect = 3e-015
Identities = 104/123 (84%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 34 gccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacggc 93
||||| |||||||||||| ||||||| | ||| ||||||||||| |||||||||||
Sbjct: 177 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 236
Query: 94 aacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcga 153
||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||| |
Sbjct: 237 aacctgt-acagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaa 295
Query: 154 cga 156
|||
Sbjct: 296 cga 298
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 139 bits (70), Expect = 2e-031
Identities = 214/262 (81%)
Strand = Plus / Plus
Query: 236 tccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgac 295
|||||| |||| || |||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 387 tccatcatggtgaccgccaccaacttctgcccgcccaactacggcctccccagcgacgac 446
Query: 296 ggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccac 355
|||||||||||||||||||| ||||| ||||| ||| | ||| ||| |||||||||
Sbjct: 447 ggcggctggtgcaacccgccgcgcccccacttagacatggccgagccggccttcctccac 506
Query: 356 atcgccgagtaccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaag 415
||||| ||||||| ||||||||||| ||| |||||||| | ||||||||||| |||
Sbjct: 507 atcgcgcagtaccgggccggcatcgtacccctctcctacagaagggtgccgtgcgtgaag 566
Query: 416 tccggcggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacg 475
|| || | |||||||| ||||||||| | ||||| ||||||| |||| | ||
Sbjct: 567 aaagggggcatccggttcaccatcaacggccactcctacttaaacctggggctggtgacc 626
Query: 476 aacgtggccggcgcgggggacg 497
|||||||||||||| |||||||
Sbjct: 627 aacgtggccggcgccggggacg 648
Score = 85.7 bits (43), Expect = 3e-015
Identities = 104/123 (84%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 34 gccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacggc 93
||||| |||||||||||| ||||||| | ||| ||||||||||| |||||||||||
Sbjct: 198 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 257
Query: 94 aacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcga 153
||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||| |
Sbjct: 258 aacctgt-acagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaa 316
Query: 154 cga 156
|||
Sbjct: 317 cga 319
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 109 bits (55), Expect = 2e-022
Identities = 123/146 (84%)
Strand = Plus / Plus
Query: 236 tccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgac 295
|||||| |||| || |||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct: 387 tccatcatggtgaccgccaccaacttctgcccgcccaactacgggctncccagcgacgac 446
Query: 296 ggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccac 355
||||| |||||||||||||| ||||| ||||| ||| | ||| ||| ||||| |||
Sbjct: 447 ggcgggtggtgcaacccgccgcgcccccactttgacatggccgagccggccttccttcac 506
Query: 356 atcgccgagtaccgcgccggcatcgt 381
||||| ||||||| |||||||||||
Sbjct: 507 atcgcgcagtaccgggccggcatcgt 532
Score = 85.7 bits (43), Expect = 3e-015
Identities = 104/123 (84%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 34 gccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacggc 93
||||| |||||||||||| ||||||| | ||| ||||||||||| |||||||||||
Sbjct: 198 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 257
Query: 94 aacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcga 153
||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||| |
Sbjct: 258 aacctgt-acagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaa 316
Query: 154 cga 156
|||
Sbjct: 317 cga 319
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 107 bits (54), Expect = 7e-022
Identities = 216/270 (80%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggg 424
||||||||||||||||||||||| |||||||| ||||||| || ||| ||||||
Sbjct: 178 taccgcgccggcatcgtgcccgtttcctaccggagggtgccctgtgtgaagaagggcggg 237
Query: 425 gtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggcc 484
|| ||||||| ||||||||| | ||||||||||||||||| | || |||||||||
Sbjct: 238 atgaggttcaccatcaacggccactcctacttcaacctggtgcttgtgaccaacgtggcc 297
Query: 485 ggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgcccatg 544
||||| || |||||| | || | |||||| | ||||| ||||||||| | |||||
Sbjct: 298 ggcgccggcgacgtgcagtccgtctccatcaaggggtccagctccgggtggcaggccatg 357
Query: 545 tccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctcc 604
||| | ||||||||||||||||||||| |||||| ||||| ||||||| ||||||
Sbjct: 358 tcccgcaactggggccagaactggcagagcaacgcggacctcgacggccagagcctctcc 417
Query: 605 ttccgcgtcaccgccagcgaccgccgcacc 634
||||| |||||| ||||||| ||||||||
Sbjct: 418 ttccgggtcaccctcagcgacggccgcacc 447
Score = 99.6 bits (50), Expect = 2e-019
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 59 tcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggt 118
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| ||| | |||||||||
Sbjct: 119 gcaacccgccgcgcgcccacttcgac 144
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 107 bits (54), Expect = 7e-022
Identities = 216/270 (80%)
Strand = Plus / Minus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggg 424
||||||||||||||||||||||| |||||||| ||||||| || ||| ||||||
Sbjct: 589 taccgcgccggcatcgtgcccgtttcctaccggagggtgccctgtgtgaagaagggcggg 530
Query: 425 gtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggcc 484
|| ||||||| ||||||||| | ||||||||||||||||| | || |||||||||
Sbjct: 529 atgaggttcaccatcaacggccactcctacttcaacctggtgcttgtgaccaacgtggcc 470
Query: 485 ggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgcccatg 544
||||| || |||||| | || | |||||| | ||||| ||||||||| | |||||
Sbjct: 469 ggcgccggcgacgtgcagtccgtctccatcaaggggtccagctccgggtggcaggccatg 410
Query: 545 tccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctcc 604
||| | ||||||||||||||||||||| |||||| ||||| ||||||| ||||||
Sbjct: 409 tcccgcaactggggccagaactggcagagcaacgcggacctcgacggccagagcctctcc 350
Query: 605 ttccgcgtcaccgccagcgaccgccgcacc 634
||||| |||||| ||||||| ||||||||
Sbjct: 349 ttccgggtcaccctcagcgacggccgcacc 320
Score = 99.6 bits (50), Expect = 2e-019
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 708 tcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggt 649
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| ||| | |||||||||
Sbjct: 648 gcaacccgccgcgcgcccacttcgac 623
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 107 bits (54), Expect = 7e-022
Identities = 216/270 (80%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggg 424
||||||||||||||||||||||| |||||||| ||||||| || ||| ||||||
Sbjct: 116 taccgcgccggcatcgtgcccgtttcctaccggagggtgccctgtgtgaagaagggcggg 175
Query: 425 gtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggcc 484
|| ||||||| ||||||||| | ||||||||||||||||| | || |||||||||
Sbjct: 176 atgaggttcaccatcaacggccactcctacttcaacctggtgcttgtgaccaacgtggcc 235
Query: 485 ggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgcccatg 544
||||| || |||||| | || | |||||| | ||||| ||||||||| | |||||
Sbjct: 236 ggcgccggcgacgtgcagtccgtctccatcaaggggtccagctccgggtggcaggccatg 295
Query: 545 tccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctcc 604
||| | ||||||||||||||||||||| |||||| ||||| ||||||| ||||||
Sbjct: 296 tcccgcaactggggccagaactggcagagcaacgcggacctcgacggccagagcctctcc 355
Query: 605 ttccgcgtcaccgccagcgaccgccgcacc 634
||||| |||||| ||||||| ||||||||
Sbjct: 356 ttccgggtcaccctcagcgacggccgcacc 385
Score = 89.7 bits (45), Expect = 2e-016
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 263 tgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccg 322
|||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |
Sbjct: 14 tgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaacccgccgcgcgcc 73
Query: 323 cacttcgac 331
|||||||||
Sbjct: 74 cacttcgac 82
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 107 bits (54), Expect = 7e-022
Identities = 216/270 (80%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggg 424
||||||||||||||||||||||| |||||||| ||||||| || ||| ||||||
Sbjct: 102 taccgcgccggcatcgtgcccgtttcctaccggagggtgccctgtgtgaagaagggcggg 161
Query: 425 gtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggcc 484
|| ||||||| ||||||||| | ||||||||||||||||| | || |||||||||
Sbjct: 162 atgaggttcaccatcaacggccactcctacttcaacctggtgcttgtgaccaacgtggcc 221
Query: 485 ggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgcccatg 544
||||| || |||||| | || | |||||| | ||||| ||||||||| | |||||
Sbjct: 222 ggcgccggcgacgtgcagtccgtctccatcaaggggtccagctccgggtggcaggccatg 281
Query: 545 tccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctcc 604
||| | ||||||||||||||||||||| |||||| ||||| ||||||| ||||||
Sbjct: 282 tcccgcaactggggccagaactggcagagcaacgcggacctcgacggccagagcctctcc 341
Query: 605 ttccgcgtcaccgccagcgaccgccgcacc 634
||||| |||||| ||||||| ||||||||
Sbjct: 342 ttccgggtcaccctcagcgacggccgcacc 371
Score = 87.7 bits (44), Expect = 7e-016
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 264 gcccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgc 323
||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| | |
Sbjct: 1 gcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaacccgccgcgcgccc 60
Query: 324 acttcgac 331
||||||||
Sbjct: 61 acttcgac 68
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 99.6 bits (50), Expect = 2e-019
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 358 tcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggt 417
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| ||| | |||||||||
Sbjct: 418 gcaacccgccgcgcgcccacttcgac 443
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/126 (83%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 162 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 221
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 222 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 280
Query: 151 cgacga 156
| ||||
Sbjct: 281 caacga 286
Score = 61.9 bits (31), Expect = 4e-008
Identities = 109/135 (80%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggg 424
||||||||||||||||||||||| |||||||| ||||||| || ||| ||||||
Sbjct: 477 taccgcgccggcatcgtgcccgtttcctaccggagggtgccctgtgtgaagaagggcggg 536
Query: 425 gtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggcc 484
|| ||||||| ||||||||| | ||||| ||||||||||| | || |||||||||
Sbjct: 537 atgaggttcaccatcaacggccactcctactttaacctggtgcttgtgaccaacgtggcc 596
Query: 485 ggcgcgggggacgtg 499
||||| || ||||||
Sbjct: 597 ggcgccggcgacgtg 611
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 99.6 bits (50), Expect = 2e-019
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 122 tcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggt 181
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| ||| | |||||||||
Sbjct: 182 gcaacccgccgcgcgcccacttcgac 207
Score = 61.9 bits (31), Expect = 4e-008
Identities = 109/135 (80%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggg 424
||||||||||||||||||||||| |||||||| ||||||| || ||| ||||||
Sbjct: 241 taccgcgccggcatcgtgcccgtttcctaccggagggtgccctgtgtgaagaagggcggg 300
Query: 425 gtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggcc 484
|| ||||||| ||||||||| | ||||| ||||||||||| | || |||||||||
Sbjct: 301 atgaggttcaccatcaacggccactcctactttaacctggtgcttgtgaccaacgtggcc 360
Query: 485 ggcgcgggggacgtg 499
||||| || ||||||
Sbjct: 361 ggcgccggcgacgtg 375
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 128 gcggcgctgagcacggcgctgttcgacga 156
|||||||||||||||||||||||| ||||
Sbjct: 22 gcggcgctgagcacggcgctgttcaacga 50
Score = 42.1 bits (21), Expect = 0.036
Identities = 43/49 (87%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 522 ccagcaccgggtggctgcccatgtccaggaactggggccagaactggca 570
||||| |||||||| |||| ||||| | ||||||||||||||||||||
Sbjct: 397 ccagctccgggtggaggccc-tgtcccgcaactggggccagaactggca 444
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 99.6 bits (50), Expect = 2e-019
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 362 tcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggt 421
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| ||| | |||||||||
Sbjct: 422 gcaacccgccgcgcgcccacttcgac 447
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/126 (83%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 166 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 225
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 226 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 284
Query: 151 cgacga 156
| ||||
Sbjct: 285 caacga 290
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 99.6 bits (50), Expect = 2e-019
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 202 tcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggt 261
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| ||| | |||||||||
Sbjct: 262 gcaacccgccgcgcgcccacttcgac 287
Score = 85.7 bits (43), Expect = 3e-015
Identities = 166/207 (80%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggg 424
||||||||||||||||||||||| |||||||| ||||||| || ||| ||||||
Sbjct: 321 taccgcgccggcatcgtgcccgtttcctaccggagggtgccctgtgtgaagaagggcggg 380
Query: 425 gtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggcc 484
|| ||||||| ||||||||| | ||||||||||||||||| | || |||||||||
Sbjct: 381 atgaggttcaccatcaacggccactcctacttcaacctggtgcttgtgaccaacgtggcc 440
Query: 485 ggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgcccatg 544
||||| || |||||| | || | |||||| | ||||| ||||||||| | |||||
Sbjct: 441 ggcgccggcgacgtgcagtccgtctccatcaaggggtccagctccgggtggcaggccatg 500
Query: 545 tccaggaactggggccagaactggcag 571
||| | |||||||||||||||||||||
Sbjct: 501 tcccgcaactggggccagaactggcag 527
Score = 65.9 bits (33), Expect = 3e-009
Identities = 97/117 (82%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 40 ttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacggcaacctg 99
|||||||||||| ||||||| | ||| |||||||| || ||||| ||||| ||||||
Sbjct: 15 ttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctacgggaacctg 74
Query: 100 tgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacga 156
| ||||| ||| |||||| ||||| |||||||||||||||||||||||| ||||
Sbjct: 75 t-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgttcaacga 130
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 99.6 bits (50), Expect = 2e-019
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 373 tcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggt 432
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| ||| | |||||||||
Sbjct: 433 gcaacccgccgcgcgcccacttcgac 458
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/126 (83%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 177 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 236
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 237 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 295
Query: 151 cgacga 156
| ||||
Sbjct: 296 caacga 301
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 99.6 bits (50), Expect = 2e-019
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 97 tcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggt 156
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| ||| | |||||||||
Sbjct: 157 gcaacccgccgcgcgcccacttcgac 182
Score = 73.8 bits (37), Expect = 1e-011
Identities = 164/207 (79%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggg 424
||||||||||||||||||||||| |||||||| ||||||| || ||| |||||
Sbjct: 216 taccgcgccggcatcgtgcccgtttcctaccggagggtgccctgtgtgaagaagggcggn 275
Query: 425 gtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggcc 484
|| ||||||| ||||||||| | ||||||||||||||||| || |||||||||
Sbjct: 276 atgaggttcaccatcaacggccactcctacttcaacctggtgcttgngaccaacgtggcc 335
Query: 485 ggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgcccatg 544
||||| || |||||| | || | |||||| | ||||| ||||||||| | |||||
Sbjct: 336 ggcgccggcgacgtgcagtccgtctccatcaaggggtccagctccgggtggcaggccatg 395
Query: 545 tccaggaactggggccagaactggcag 571
||| | |||||||||||||||||||||
Sbjct: 396 tcccgcaactggggccagaactggcag 422
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 131 gcgctgagcacggcgctgtt 150
||||||||||||||||||||
Sbjct: 1 gcgctgagcacggcgctgtt 20
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 93.7 bits (47), Expect = 1e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 222 tcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggt 281
Query: 306 gcaacccgccccgcccgcacttc 328
|||||||||| ||| | ||||||
Sbjct: 282 gcaacccgccgcgcgcccacttc 304
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/126 (83%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 26 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 85
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 86 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 144
Query: 151 cgacga 156
| ||||
Sbjct: 145 caacga 150
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgcc 405
||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 341 taccgggccggcatcgtgcccgtttcctaccggagggtgcc 381
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 93.7 bits (47), Expect = 1e-017
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 253 caccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaaccc 312
||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 391 caccaacctttgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaaccc 450
Query: 313 gccccgcccgcacttcgac 331
||| ||| | |||||||||
Sbjct: 451 gccgcgcgcccacttcgac 469
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/126 (83%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 188 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 247
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 248 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 306
Query: 151 cgacga 156
| ||||
Sbjct: 307 caacga 312
Score = 56.0 bits (28), Expect = 2e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccg 396
||||||||||||||||||||||| ||||||||
Sbjct: 503 taccgcgccggcatcgtgcccgtttcctaccg 534
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||||||||||||||||||||||||||||||||| || || |||| ||||||| ||||
Sbjct: 328 tcacggccaccaacttctgcccgcccaactacgccctggccagcgacaacggcggatggt 387
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| || | ||||||||||
Sbjct: 388 gcaacccgccgcggcagcacttcgac 413
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 ttctacggcggcagcgacgctt 61
||||||||||||||||||||||
Sbjct: 129 ttctacggcggcagcgacgctt 150
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 91.7 bits (46), Expect = 4e-017
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 254 accaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccg 313
|||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 344 accaacctctgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaaccca 403
Query: 314 ccccgcccgcacttcgac 331
|| ||| | |||||||||
Sbjct: 404 ccgcgcgcacacttcgac 421
Score = 67.9 bits (34), Expect = 6e-010
Identities = 104/126 (82%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| |||| || | ||| |||||||| || ||||| |||
Sbjct: 140 cacgccaccttctacggcggcggcgaggcgtccggcacaatgggcggcgcgtgcggctac 199
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 200 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 258
Query: 151 cgacga 156
| ||||
Sbjct: 259 caacga 264
Score = 58.0 bits (29), Expect = 6e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgcc 405
||||||||||||||||||||||| |||||||| |||||||
Sbjct: 455 taccgcgccggcatcgtgcccgtttcctaccggagggtgcc 495
Score = 56.0 bits (28), Expect = 2e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgtg 499
|||||||||||||||||| | || |||||||||||||| || ||||||
Sbjct: 542 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgtg 589
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 87.7 bits (44), Expect = 7e-016
Identities = 185/232 (79%)
Strand = Plus / Plus
Query: 251 gccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaac 310
||||||||||||||||||||||||| || | ||||||| ||||||||||||||||
Sbjct: 117 gccaccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcggctggtgcaac 176
Query: 311 ccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtaccgc 370
|| |||||| | ||||||||| | || |||| | |||| | |||||| ||||||
Sbjct: 177 cctccccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgcgctctaccgc 236
Query: 371 gccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcgg 430
|||||||| || ||||||||||||||| ||||| |||||| ||| ||||| | ||
Sbjct: 237 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 296
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtgg 482
||||| ||||| ||| | ||||||||||||||||||| |||| |||||||
Sbjct: 297 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgg 348
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 87.7 bits (44), Expect = 7e-016
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggc 301
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 33 tcacggccaccaacctctgcccgcccaactacgcgctccccaacgacgacggcggc 88
Score = 69.9 bits (35), Expect = 2e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 525 gcaccgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgc 579
||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 237 gcaccgggtggatgcccatgtccaggaactggggggtcaactggcagtccaacgc 291
>gb|BQ461095.1|BQ461095 HE01D18r HE Hordeum vulgare subsp. vulgare cDNA clone HE01D18
5-PRIME, mRNA sequence
Length = 261
Score = 87.7 bits (44), Expect = 7e-016
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggc 301
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 33 tcacggccaccaacctctgcccgcccaactacgcgctccccaacgacgacggcggc 88
Score = 42.1 bits (21), Expect = 0.036
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 525 gcaccgggtggctgcccatgtccag 549
||||||||||| |||||||||||||
Sbjct: 237 gcaccgggtggatgcccatgtccag 261
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 87.7 bits (44), Expect = 7e-016
Identities = 173/216 (80%)
Strand = Plus / Plus
Query: 419 ggcggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaac 478
|||||| || ||||||| ||||||||| | ||||||||||||||||| | || |||
Sbjct: 34 ggcgggatgaggttcaccatcaacggccactcctacttcaacctggtgcttgtgaccaac 93
Query: 479 gtggccggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctg 538
||||||||||| || |||||| | || | |||||| | ||||| ||||||||| |
Sbjct: 94 gtggccggcgccggcgacgtgcagtccgtctccatcaaggggtccagctccgggtggcag 153
Query: 539 cccatgtccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcg 598
|||||||| | ||||||||||||||||||||| |||||| ||||| |||||||
Sbjct: 154 gccatgtcccgcaactggggccagaactggcagagcaacgcggacctcgacggccagagc 213
Query: 599 ctctccttccgcgtcaccgccagcgaccgccgcacc 634
||||||||||| |||||| ||||||| ||||||||
Sbjct: 214 ctctccttccgggtcaccctcagcgacggccgcacc 249
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 87.7 bits (44), Expect = 7e-016
Identities = 185/232 (79%)
Strand = Plus / Plus
Query: 251 gccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaac 310
||||||||||||||||||||||||| || | ||||||| ||||||||||||||||
Sbjct: 134 gccaccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcggctggtgcaac 193
Query: 311 ccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtaccgc 370
|| |||||| | ||||||||| | || |||| | |||| | |||||| ||||||
Sbjct: 194 cctccccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgcgctctaccgc 253
Query: 371 gccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcgg 430
|||||||| || ||||||||||||||| ||||| |||||| ||| ||||| | ||
Sbjct: 254 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 313
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtgg 482
||||| ||||| ||| | ||||||||||||||||||| |||| |||||||
Sbjct: 314 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgg 365
Score = 42.1 bits (21), Expect = 0.036
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 128 gcggcgctgagcacggcgctgttcgacgaggggctccgctgcggcgcgtgcttcgag 184
||||| |||||||||||||| ||| || | || ||| ||||||| || |||||||||
Sbjct: 5 gcggccctgagcacggcgctcttcaacaacggcctcagctgcggggcctgcttcgag 61
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 87.7 bits (44), Expect = 7e-016
Identities = 185/232 (79%)
Strand = Plus / Plus
Query: 251 gccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaac 310
||||||||||||||||||||||||| || | ||||||| ||||||||||||||||
Sbjct: 138 gccaccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcggctggtgcaac 197
Query: 311 ccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtaccgc 370
|| |||||| | ||||||||| | || |||| | |||| | |||||| ||||||
Sbjct: 198 cctccccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgcgctctaccgc 257
Query: 371 gccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcgg 430
|||||||| || ||||||||||||||| ||||| |||||| ||| ||||| | ||
Sbjct: 258 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 317
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtgg 482
||||| ||||| ||| | ||||||||||||||||||| |||| |||||||
Sbjct: 318 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgg 369
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 85.7 bits (43), Expect = 3e-015
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 254 accaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaaccc 312
|||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 343 accaacctctgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaaccc 401
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/126 (83%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 139 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 198
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 199 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 257
Query: 151 cgacga 156
| ||||
Sbjct: 258 caacga 263
Score = 58.0 bits (29), Expect = 6e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgcc 405
||||||||||||||||||||||| |||||||| |||||||
Sbjct: 454 taccgcgccggcatcgtgcccgtttcctaccggagggtgcc 494
Score = 56.0 bits (28), Expect = 2e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgtg 499
|||||||||||||||||| | || |||||||||||||| || ||||||
Sbjct: 541 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgtg 588
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 85.7 bits (43), Expect = 3e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 234 cctccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacg 293
|||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 179 cctccatcgtcgtcacggccaccaacttctgcccgcccaactacggcttccccgccgacg 238
Query: 294 acggcggctggtgcaacccgccc 316
||||||| ||||||||||||
Sbjct: 239 ccggcggcgtctgcaacccgccc 261
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 133 gctgagcacggcgctgttcga 153
|||||||||||||||||||||
Sbjct: 87 gctgagcacggcgctgttcga 107
>gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024K11f, mRNA sequence
Length = 847
Score = 85.7 bits (43), Expect = 3e-015
Identities = 104/123 (84%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 34 gccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacggc 93
||||| |||||||||||| ||||||| | ||| ||||||||||| |||||||||||
Sbjct: 200 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 259
Query: 94 aacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcga 153
||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||| |
Sbjct: 260 aacctgt-acagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaa 318
Query: 154 cga 156
|||
Sbjct: 319 cga 321
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 85.7 bits (43), Expect = 3e-015
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 347 ttcctccacatcgccgagtaccgcgccggcatcgtgcccgtctcctaccgccgggtgccg 406
|||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||
Sbjct: 17 ttcctccacatcgcgcagtaccgcgccggcatcgtacccgtctcctacagaagggtgccg 76
Query: 407 tgccgcaagtccggcggggtgcggttcacaatcaacggcttccggtacttcaacctggtg 466
||| ||| || || | |||||||| ||||||||| | |||||||||||||||
Sbjct: 77 tgcgtgaagaaggggggcatccggttcaccatcaacggccactcctacttcaacctggtg 136
Query: 467 ctgatcacgaacgtggccggcgc 489
||| | || ||||||||||||||
Sbjct: 137 ctggtgaccaacgtggccggcgc 159
Score = 56.0 bits (28), Expect = 2e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 334 ctggcagttcggccagaccttcgagggc 361
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 85.7 bits (43), Expect = 3e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 234 cctccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacg 293
|||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 61 cctccatcgtcgtcacggccaccaacttctgcccgcccaactacggcttccccgccgacg 120
Query: 294 acggcggctggtgcaacccgccc 316
||||||| ||||||||||||
Sbjct: 121 ccggcggcgtctgcaacccgccc 143
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 85.7 bits (43), Expect = 3e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 234 cctccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacg 293
|||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 61 cctccatcgtcgtcacggccaccaacttctgcccgcccaactacggcttccccgccgacg 120
Query: 294 acggcggctggtgcaacccgccc 316
||||||| ||||||||||||
Sbjct: 121 ccggcggcgtctgcaacccgccc 143
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 85.7 bits (43), Expect = 3e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 234 cctccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacg 293
|||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 61 cctccatcgtcgtcacggccaccaacttctgcccgcccaactacggcttccccgccgacg 120
Query: 294 acggcggctggtgcaacccgccc 316
||||||| ||||||||||||
Sbjct: 121 ccggcggcgtctgcaacccgccc 143
>gb|CA002659.1|CA002659 HS08C15r HS Hordeum vulgare subsp. vulgare cDNA clone HS08C15
5-PRIME, mRNA sequence
Length = 364
Score = 85.7 bits (43), Expect = 3e-015
Identities = 104/123 (84%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 34 gccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacggc 93
||||| |||||||||||| ||||||| | ||| ||||||||||| |||||||||||
Sbjct: 210 gccaccttctacggcggcggcgacgcctccggcacgatgggcggggcgtgcgggtacggt 269
Query: 94 aacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcga 153
||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||| |
Sbjct: 270 aacctgt-acagcactgggtacggcacgaacacggcggcgctgagcacggcgctgttcaa 328
Query: 154 cga 156
|||
Sbjct: 329 cga 331
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 83.8 bits (42), Expect = 1e-014
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | |||||| ||||||||||||| || |||||||||||||||||
Sbjct: 365 tcaccgccaccaacctttgcccggccaactacgcgctggccaacgacgacggcggctggt 424
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| ||| | |||||||||
Sbjct: 425 gcaacccgccgcgcgcccacttcgac 450
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/126 (83%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 169 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 228
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 229 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 287
Query: 151 cgacga 156
| ||||
Sbjct: 288 caacga 293
>gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F10
3-PRIME, mRNA sequence
Length = 532
Score = 79.8 bits (40), Expect = 2e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 252 ccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaacc 311
|||||||||||||||||||||||| ||||||||| | || ||||||| ||||||||||
Sbjct: 532 ccaccaacttctgcccgcccaactgggcgctccccagcaacaacggcgggtggtgcaacc 473
Query: 312 cgccccgcccgcacttcgac 331
|||| |||| |||||||||
Sbjct: 472 cgccgcgcctccacttcgac 453
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 79.8 bits (40), Expect = 2e-013
Identities = 181/228 (79%)
Strand = Plus / Plus
Query: 255 ccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgc 314
||||||||||||||||||||| || | ||||||| |||||||||||||||||| |
Sbjct: 15 ccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcggctggtgcaaccctc 74
Query: 315 cccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccg 374
||||| | ||||||||| | || |||| | |||| | |||||| ||||||||||
Sbjct: 75 cccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgcgctctaccgcgccg 134
Query: 375 gcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcggttca 434
|||| || ||||||||||||||| ||||| |||||| ||| ||||| | ||||||
Sbjct: 135 gcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcaggttca 194
Query: 435 caatcaacggcttccggtacttcaacctggtgctgatcacgaacgtgg 482
| ||||| ||| | ||||||||||||||||||| |||| |||||||
Sbjct: 195 cgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgg 242
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 77.8 bits (39), Expect = 7e-013
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacga-cggcggctgg 304
|||| ||||||||| | |||||||||||||||||||| ||| |||||| | ||||||||
Sbjct: 260 tcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgaccagcggctgg 319
Query: 305 tgcaacccgccccgcccgcacttcgac 331
||||||||||| ||| | |||||||||
Sbjct: 320 tgcaacccgccgcgcgcccacttcgac 346
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/126 (83%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 64 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 123
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 124 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 182
Query: 151 cgacga 156
| ||||
Sbjct: 183 caacga 188
Score = 65.9 bits (33), Expect = 3e-009
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 367 ccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggggt 426
||||||||||||||||||||| |||||||| ||||||| || ||| |||||| |
Sbjct: 383 ccgcgccggcatcgtgcccgtttcctaccggagggtgccctgtgtgaagaagggcgggat 442
Query: 427 gcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
| ||||||| ||||||||| | ||||||||||||||||| | || |||||||||||
Sbjct: 443 gaggttcaccatcaacggccactcctacttcaacctggtgcttgtgaccaacgtggccgg 502
Query: 487 cgcgggggacgtg 499
||| || ||||||
Sbjct: 503 cgccggcgacgtg 515
>gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_C21 5', mRNA sequence
Length = 413
Score = 77.8 bits (39), Expect = 7e-013
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctc 283
|||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtcacggccaccaacttctgcccgcccaactacgcgctc 400
Score = 67.9 bits (34), Expect = 6e-010
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
||||| ||||||||||||||| ||||||| | ||| |||||||| ||||||||||||
Sbjct: 155 cacgcgacgttctacggcggcggcgacgcgtccggcacgatgggcggcgcctgcgggtac 214
Query: 91 ggcaacctgt 100
||||||||||
Sbjct: 215 ggcaacctgt 224
>gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004I04f, mRNA sequence
Length = 894
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/126 (83%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 174 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 233
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 234 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 292
Query: 151 cgacga 156
| ||||
Sbjct: 293 caacga 298
>gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011P08f, mRNA sequence
Length = 1124
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/126 (83%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 179 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 238
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 239 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 297
Query: 151 cgacga 156
| ||||
Sbjct: 298 caacga 303
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 73.8 bits (37), Expect = 1e-011
Identities = 148/185 (80%)
Strand = Plus / Plus
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| ||||||||||||| ||
Sbjct: 1 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccacatcgggcag 60
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggg 424
||||||||||||||||| ||||| |||||| | ||||||||||| ||| || ||
Sbjct: 61 taccgcgccggcatcgtacccgtttcctacagaagggtgccgtgcgtgaagaaggggggc 120
Query: 425 gtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggcc 484
| |||||||| ||||||||| | |||||||||||||||||| | || |||||||||
Sbjct: 121 atccggttcaccatcaacggccactcctacttcaacctggtgctggtgaccaacgtggcc 180
Query: 485 ggcgc 489
|||||
Sbjct: 181 ggcgc 185
>gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023B18f, mRNA sequence
Length = 570
Score = 73.8 bits (37), Expect = 1e-011
Identities = 101/121 (83%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 167 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 226
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 227 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 285
Query: 151 c 151
|
Sbjct: 286 c 286
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgct 282
|||| ||||||||| | ||||||||||||||||||||
Sbjct: 363 tcaccgccaccaacctttgcccgcccaactacgcgct 399
>gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010L18f, mRNA sequence
Length = 677
Score = 73.8 bits (37), Expect = 1e-011
Identities = 101/121 (83%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 181 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 240
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 241 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 299
Query: 151 c 151
|
Sbjct: 300 c 300
Score = 58.0 bits (29), Expect = 6e-007
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||| ||||||||| | ||||| |||||||||| || ||| |||||||||||| ||||
Sbjct: 377 tcaccgccaccaacctttgccccgccaactacgcnctgcccaacgacgacggcgggtggt 436
Query: 306 gcaacccgcccc 317
||||||| ||||
Sbjct: 437 gcaacccccccc 448
>gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014B22f, mRNA sequence
Length = 660
Score = 73.8 bits (37), Expect = 1e-011
Identities = 101/121 (83%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 162 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 221
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 222 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 280
Query: 151 c 151
|
Sbjct: 281 c 281
>gb|BI947183.1|BI947183 HVSMEl0004B07f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0004B07f, mRNA sequence
Length = 800
Score = 71.9 bits (36), Expect = 4e-011
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 671 ttcggccagaccttcgagggcaagaacttcagggtctgat 710
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 98 ttcggacagaccttcgagggcaagaacttcagggtctgat 137
>gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019G01f, mRNA sequence
Length = 669
Score = 71.9 bits (36), Expect = 4e-011
Identities = 100/120 (83%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||||| |||
Sbjct: 160 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcggctac 219
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
|| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 220 gggaacctgt-acagcacgggttacggcacgaacacggcggcgctgagcacggcgctgtt 278
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 71.9 bits (36), Expect = 4e-011
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 253 caccaacttctgcccgcccaac-tacgcgctcccctccgacgacggcggctggtgcaacc 311
||||||| | |||||||||||| |||||||| ||| |||| ||||||||||||||||||
Sbjct: 395 caccaacctttgcccgcccaacctacgcgctgcccaacgaccacggcggctggtgcaacc 454
Query: 312 cgccccgcccgcacttcgac 331
|||| ||| | |||||||||
Sbjct: 455 cgccgcgcgcccacttcgac 474
Score = 60.0 bits (30), Expect = 2e-007
Identities = 103/126 (81%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtac 90
|||||||| |||||||||||| ||||||| | ||| |||||||| || ||| | |||
Sbjct: 192 cacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgctgctac 251
Query: 91 ggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgtt 150
| ||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 252 cggaacctgt-acagcacgggttacggcacgaacactgcggcgctgagcacggcgctgtt 310
Query: 151 cgacga 156
| ||||
Sbjct: 311 caacga 316
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 365 taccgcgccggcatcgtgcccgt 387
|||||||||||||||||||||||
Sbjct: 508 taccgcgccggcatcgtgcccgt 530
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 144,164
Number of Sequences: 312970
Number of extensions: 144164
Number of successful extensions: 43003
Number of sequences better than 0.5: 99
Number of HSP's better than 0.5 without gapping: 96
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 42679
Number of HSP's gapped (non-prelim): 276
length of query: 1044
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1025
effective length of database: 169,188,109
effective search space: 173417811725
effective search space used: 173417811725
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)