BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4534747.2.1
(628 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ461221.1|AJ461221 AJ461221 S00002 Hordeum vulgare subs... 52 2e-005
gb|BF622824.2|BF622824 HVSMEa0009C21f Hordeum vulgare seedl... 50 9e-005
gb|BG415060.1|BG415060 HVSMEk0004P24f Hordeum vulgare testa... 48 3e-004
gb|BQ660212.1|BQ660212 HI01I09w HI Hordeum vulgare subsp. v... 48 3e-004
gb|BU995645.1|BU995645 HM10O13r HM Hordeum vulgare subsp. v... 48 3e-004
gb|CB881798.1|CB881798 HM10O13w HM Hordeum vulgare subsp. v... 48 3e-004
gb|CB875785.1|CB875785 HX09F12w HX Hordeum vulgare subsp. v... 42 0.022
gb|AL503431.1|AL503431 AL503431 Hordeum vulgare Barke roots... 38 0.34
gb|BI954147.1|BI954147 HVSMEm0016G03f Hordeum vulgare green... 38 0.34
gb|BI958890.1|BI958890 HVSMEn0017A21f Hordeum vulgare rachi... 38 0.34
gb|BG417399.2|BG417399 HVSMEk0017D09f Hordeum vulgare testa... 38 0.34
gb|BM097231.2|BM097231 EBpi07_SQ002_N01_R pistil, 12 DPA, n... 38 0.34
gb|CA012350.1|CA012350 HT05C23r HT Hordeum vulgare subsp. v... 38 0.34
gb|CV054090.1|CV054090 BNEL106f2 Barley EST endosperm libra... 38 0.34
gb|CK122708.1|CK122708 BES1824105i15 BES1824 Hordeum vulgar... 38 0.34
gb|CK125619.1|CK125619 BES1824109e02 BES1824 Hordeum vulgar... 38 0.34
>gb|AJ461221.1|AJ461221 AJ461221 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200064D10F1, mRNA sequence
Length = 240
Score = 52.0 bits (26), Expect = 2e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 355 gaggggtgcagctgagatcaagcagcacccgttctttgatggggtcaactgggc 408
|||||| || || ||||||||||||||||| ||||| || || |||||||||||
Sbjct: 8 gaggggagcggccgagatcaagcagcacccattcttcgagggtgtcaactgggc 61
>gb|BF622824.2|BF622824 HVSMEa0009C21f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009C21f, mRNA sequence
Length = 721
Score = 50.1 bits (25), Expect = 9e-005
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 368 gagatcaagcagcacccgttctttgatggggtcaactgggc 408
||||||||||||||||||||||| || || || ||||||||
Sbjct: 168 gagatcaagcagcacccgttcttcgagggcgtgaactgggc 208
>gb|BG415060.1|BG415060 HVSMEk0004P24f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004P24f, mRNA sequence
Length = 632
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 374 aagcagcacccgttctttgatggggtcaactgggca 409
|||||||||||||||||||| || || |||||||||
Sbjct: 159 aagcagcacccgttctttgaaggtgttaactgggca 194
>gb|BQ660212.1|BQ660212 HI01I09w HI Hordeum vulgare subsp. vulgare cDNA clone HI01I09
3-PRIME, mRNA sequence
Length = 677
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 374 aagcagcacccgttctttgatggggtcaactgggca 409
|||||||||||||||||||| || || |||||||||
Sbjct: 390 aagcagcacccgttctttgaaggtgttaactgggca 355
>gb|BU995645.1|BU995645 HM10O13r HM Hordeum vulgare subsp. vulgare cDNA clone HM10O13
5-PRIME, mRNA sequence
Length = 617
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 374 aagcagcacccgttctttgatggggtcaactgggca 409
|||||||||||||||||||| || || |||||||||
Sbjct: 267 aagcagcacccgttctttgaaggtgttaactgggca 302
>gb|CB881798.1|CB881798 HM10O13w HM Hordeum vulgare subsp. vulgare cDNA clone HM10O13
3-PRIME, mRNA sequence
Length = 589
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 374 aagcagcacccgttctttgatggggtcaactgggca 409
|||||||||||||||||||| || || |||||||||
Sbjct: 417 aagcagcacccgttctttgaaggtgttaactgggca 382
>gb|CB875785.1|CB875785 HX09F12w HX Hordeum vulgare subsp. vulgare cDNA clone HX09F12
3-PRIME, mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.022
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 368 gagatcaagcagcacccgttctttgatggggtcaactgggc 408
||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 528 gagataaagcagcaccccttctttgagggtgtgaactgggc 488
>gb|AL503431.1|AL503431 AL503431 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02C02T 5', mRNA sequence
Length = 700
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 474 aggagaagccggcggcggc 492
|||||||||||||||||||
Sbjct: 155 aggagaagccggcggcggc 137
>gb|BI954147.1|BI954147 HVSMEm0016G03f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0016G03f, mRNA sequence
Length = 664
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 474 aggagaagccggcggcggc 492
|||||||||||||||||||
Sbjct: 59 aggagaagccggcggcggc 41
>gb|BI958890.1|BI958890 HVSMEn0017A21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017A21f, mRNA sequence
Length = 621
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 474 aggagaagccggcggcggc 492
|||||||||||||||||||
Sbjct: 211 aggagaagccggcggcggc 193
>gb|BG417399.2|BG417399 HVSMEk0017D09f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017D09f, mRNA sequence
Length = 802
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 474 aggagaagccggcggcggc 492
|||||||||||||||||||
Sbjct: 235 aggagaagccggcggcggc 217
>gb|BM097231.2|BM097231 EBpi07_SQ002_N01_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_N01 5', mRNA sequence
Length = 547
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 474 aggagaagccggcggcggc 492
|||||||||||||||||||
Sbjct: 23 aggagaagccggcggcggc 5
>gb|CA012350.1|CA012350 HT05C23r HT Hordeum vulgare subsp. vulgare cDNA clone HT05C23
5-PRIME, mRNA sequence
Length = 565
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 474 aggagaagccggcggcggc 492
|||||||||||||||||||
Sbjct: 64 aggagaagccggcggcggc 46
>gb|CV054090.1|CV054090 BNEL106f2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL106f2 5' similar to
OSJNBb0006N15.11, mRNA sequence
Length = 702
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 474 aggagaagccggcggcggc 492
|||||||||||||||||||
Sbjct: 211 aggagaagccggcggcggc 193
>gb|CK122708.1|CK122708 BES1824105i15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I155 5-PRIME, mRNA sequence
Length = 707
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 474 aggagaagccggcggcggc 492
|||||||||||||||||||
Sbjct: 64 aggagaagccggcggcggc 46
>gb|CK125619.1|CK125619 BES1824109e02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E029 5-PRIME, mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 474 aggagaagccggcggcggc 492
|||||||||||||||||||
Sbjct: 222 aggagaagccggcggcggc 204
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,487
Number of Sequences: 312970
Number of extensions: 86487
Number of successful extensions: 26973
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26952
Number of HSP's gapped (non-prelim): 21
length of query: 628
length of database: 175,134,539
effective HSP length: 19
effective length of query: 609
effective length of database: 169,188,109
effective search space: 103035558381
effective search space used: 103035558381
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)