BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995289.2.1
(559 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ763476.1|BQ763476 EBro02_SQ008_B17_R root, 3 week, hyd... 248 2e-064
gb|BE060220.1|BE060220 HVSMEg0011K01f Hordeum vulgare pre-a... 184 2e-045
gb|BI957153.1|BI957153 HVSMEn0007M22f Hordeum vulgare rachi... 184 2e-045
gb|CA030254.1|CA030254 HX06I12r HX Hordeum vulgare subsp. v... 184 2e-045
gb|BM443422.2|BM443422 EBro02_SQ005_B06_R root, 3 week, hyd... 149 1e-034
gb|BF623053.2|BF623053 HVSMEa0012M22f Hordeum vulgare seedl... 86 1e-015
gb|BF621150.3|BF621150 HVSMEa0004J06f Hordeum vulgare seedl... 86 1e-015
gb|BF628008.2|BF628008 HVSMEb0002J11f Hordeum vulgare seedl... 74 5e-012
gb|BI953372.1|BI953372 HVSMEm0012F09f Hordeum vulgare green... 66 1e-009
gb|CA017406.1|CA017406 HV05B20r HV Hordeum vulgare subsp. v... 46 0.001
gb|AF334759.1|AF334759 Hordeum vulgare homeodomain protein ... 46 0.001
gb|BI781085.2|BI781085 EBma03_SQ001_G01_R maternal, 8 DPA, ... 44 0.005
gb|CV058643.1|CV058643 BNEL3C3 Barley EST endosperm library... 42 0.019
gb|AL508424.1|AL508424 AL508424 Hordeum vulgare Barke devel... 40 0.075
gb|AL511250.1|AL511250 AL511250 Hordeum vulgare Barke devel... 40 0.075
gb|BF259468.2|BF259468 HVSMEf0019D03f Hordeum vulgare seedl... 40 0.075
gb|BI957958.1|BI957958 HVSMEn0012H20f Hordeum vulgare rachi... 40 0.075
gb|BG416095.1|BG416095 HVSMEk0009L20f Hordeum vulgare testa... 40 0.075
gb|BI959045.1|BI959045 HVSMEn0017O10f Hordeum vulgare rachi... 40 0.075
gb|BE194908.3|BE194908 HVSMEh0087I16f Hordeum vulgare 5-45 ... 40 0.075
gb|BM374763.1|BM374763 EBma05_SQ002_L20_R maternal, 12 DPA,... 40 0.075
gb|AJ461913.1|AJ461913 AJ461913 S00002 Hordeum vulgare subs... 40 0.075
gb|BQ458969.1|BQ458969 HA02L09r HA Hordeum vulgare subsp. v... 40 0.075
gb|BM376715.2|BM376715 EBem05_SQ003_A10_R embryo, 14 DPA, n... 40 0.075
gb|BM375145.2|BM375145 EBem06_SQ002_H22_R embryo, 21 DPA, n... 40 0.075
gb|BI779903.2|BI779903 EBem07_SQ001_I05_R embryo, 28 DPA, n... 40 0.075
gb|BM097956.2|BM097956 EBpi03_SQ002_C10_R pistil, 4 DPA, no... 40 0.075
gb|BM374275.2|BM374275 EBpi03_SQ003_C16_R pistil, 4 DPA, no... 40 0.075
gb|BM374280.2|BM374280 EBpi03_SQ003_C23_R pistil, 4 DPA, no... 40 0.075
gb|BM098769.2|BM098769 EBpi05_SQ002_A02_R pistil, 8 DPA, no... 40 0.075
gb|BI778710.2|BI778710 EBro01_SQ001_C17_R root, 3 week, hyd... 40 0.075
gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, wat... 40 0.075
gb|BQ766492.1|BQ766492 EBro08_SQ006_P05_R root, 3 week, dro... 40 0.075
gb|BU979685.1|BU979685 HA16O24r HA Hordeum vulgare subsp. v... 40 0.075
gb|BU984068.1|BU984068 HA31O09r HA Hordeum vulgare subsp. v... 40 0.075
gb|BU995819.1|BU995819 HM11H11r HM Hordeum vulgare subsp. v... 40 0.075
gb|BU996602.1|BU996602 HM14C09r HM Hordeum vulgare subsp. v... 40 0.075
gb|BU997610.1|BU997610 HI08H20r HI Hordeum vulgare subsp. v... 40 0.075
gb|BU999635.1|BU999635 HI15C20r HI Hordeum vulgare subsp. v... 40 0.075
gb|BU999969.1|BU999969 HS16J06u HS Hordeum vulgare subsp. v... 40 0.075
gb|CA007010.1|CA007010 HU06H10r HU Hordeum vulgare subsp. v... 40 0.075
gb|CA007569.1|CA007569 HU08F21r HU Hordeum vulgare subsp. v... 40 0.075
gb|CA008895.1|CA008895 HU12H09r HU Hordeum vulgare subsp. v... 40 0.075
gb|CA019570.1|CA019570 HV12G16r HV Hordeum vulgare subsp. v... 40 0.075
gb|CA027469.1|CA027469 HZ59A09r HZ Hordeum vulgare subsp. v... 40 0.075
gb|CB878931.1|CB878931 HP10F15T HP Hordeum vulgare subsp. v... 40 0.075
gb|CB882452.1|CB882452 HL01O10w HL Hordeum vulgare subsp. v... 40 0.075
dbj|AB024006.1| Hordeum vulgare naat-B and naat-A genes for... 40 0.075
dbj|D88273.2| Hordeum vulgare naat-A mRNA for nicotianamine... 40 0.075
gb|AL500960.1|AL500960 AL500960 Hordeum vulgare Barke roots... 38 0.30
gb|AL506570.1|AL506570 AL506570 Hordeum vulgare Barke devel... 38 0.30
gb|BG299919.1|BG299919 HVSMEa0022H19f Hordeum vulgare seedl... 38 0.30
gb|BG299992.2|BG299992 HVSMEa0022N22f Hordeum vulgare seedl... 38 0.30
gb|BE194732.1|BE194732 HVSMEh0086K19f Hordeum vulgare 5-45 ... 38 0.30
gb|BE230902.1|BE230902 HVSMEg0001E18f Hordeum vulgare pre-a... 38 0.30
gb|BF628096.2|BF628096 HVSMEb0003B24f Hordeum vulgare seedl... 38 0.30
gb|BF628416.2|BF628416 HVSMEb0003P15f Hordeum vulgare seedl... 38 0.30
gb|BF628424.2|BF628424 HVSMEb0003P23f Hordeum vulgare seedl... 38 0.30
gb|BF627486.2|BF627486 HVSMEb0004P20f Hordeum vulgare seedl... 38 0.30
gb|BF630111.2|BF630111 HVSMEb0007P23f Hordeum vulgare seedl... 38 0.30
gb|BF257334.2|BF257334 HVSMEf0012J10f Hordeum vulgare seedl... 38 0.30
gb|BE060906.2|BE060906 HVSMEg0013M21f Hordeum vulgare pre-a... 38 0.30
gb|BE455814.2|BE455814 HVSMEg0015F11f Hordeum vulgare pre-a... 38 0.30
gb|BE195706.2|BE195706 HVSMEh0090D15f Hordeum vulgare 5-45 ... 38 0.30
gb|BE196490.2|BE196490 HVSMEh0092H02f Hordeum vulgare 5-45 ... 38 0.30
gb|BG367699.1|BG367699 HVSMEi0013F02f Hordeum vulgare 20 DA... 38 0.30
gb|BG368630.1|BG368630 HVSMEi0020A10f Hordeum vulgare 20 DA... 38 0.30
gb|BI953596.1|BI953596 HVSMEm0013I04f Hordeum vulgare green... 38 0.30
gb|BI955088.1|BI955088 HVSMEm0021E21f Hordeum vulgare green... 38 0.30
gb|BF065280.1|BF065280 HV_CEb0012A03f Hordeum vulgare seedl... 38 0.30
gb|BG370007.1|BG370007 HVSMEi0026O22f Hordeum vulgare 20 DA... 38 0.30
gb|BE214005.2|BE214005 HV_CEb0001O05f Hordeum vulgare seedl... 38 0.30
gb|BE215618.2|BE215618 HV_CEb0007D24f Hordeum vulgare seedl... 38 0.30
gb|BF255515.3|BF255515 HVSMEf0007B02f Hordeum vulgare seedl... 38 0.30
gb|BG343304.2|BG343304 HVSMEg0005F21f Hordeum vulgare pre-a... 38 0.30
gb|BG366806.2|BG366806 HVSMEi0008G20f Hordeum vulgare 20 DA... 38 0.30
gb|BG367786.2|BG367786 HVSMEi0013K16f Hordeum vulgare 20 DA... 38 0.30
gb|BE216624.3|BE216624 HV_CEb0010P20f Hordeum vulgare seedl... 38 0.30
gb|BF066056.3|BF066056 HV_CEb0014L14f Hordeum vulgare seedl... 38 0.30
gb|BM378015.1|BM378015 EBem04_SQ004_O12_R embryo, 12 DPA, n... 38 0.30
gb|AV910268.1|AV910268 AV910268 K. Sato unpublished cDNA li... 38 0.30
gb|AV911747.1|AV911747 AV911747 K. Sato unpublished cDNA li... 38 0.30
gb|AV912425.1|AV912425 AV912425 K. Sato unpublished cDNA li... 38 0.30
gb|AV915152.1|AV915152 AV915152 K. Sato unpublished cDNA li... 38 0.30
gb|AV920279.1|AV920279 AV920279 K. Sato unpublished cDNA li... 38 0.30
gb|AV924350.1|AV924350 AV924350 K. Sato unpublished cDNA li... 38 0.30
gb|AV924351.1|AV924351 AV924351 K. Sato unpublished cDNA li... 38 0.30
gb|AV924820.1|AV924820 AV924820 K. Sato unpublished cDNA li... 38 0.30
gb|AV924874.1|AV924874 AV924874 K. Sato unpublished cDNA li... 38 0.30
gb|AV924881.1|AV924881 AV924881 K. Sato unpublished cDNA li... 38 0.30
gb|AV924891.1|AV924891 AV924891 K. Sato unpublished cDNA li... 38 0.30
gb|AV925103.1|AV925103 AV925103 K. Sato unpublished cDNA li... 38 0.30
gb|AV926582.1|AV926582 AV926582 K. Sato unpublished cDNA li... 38 0.30
gb|AV926591.1|AV926591 AV926591 K. Sato unpublished cDNA li... 38 0.30
gb|AV928730.1|AV928730 AV928730 K. Sato unpublished cDNA li... 38 0.30
gb|AV929985.1|AV929985 AV929985 K. Sato unpublished cDNA li... 38 0.30
gb|AV935125.1|AV935125 AV935125 K. Sato unpublished cDNA li... 38 0.30
gb|AJ432444.1|AJ432444 AJ432444 S00002 Hordeum vulgare subs... 38 0.30
gb|AJ433433.1|AJ433433 AJ433433 S00002 Hordeum vulgare subs... 38 0.30
gb|AJ435951.1|AJ435951 AJ435951 S00002 Hordeum vulgare subs... 38 0.30
gb|AJ463098.1|AJ463098 AJ463098 S00002 Hordeum vulgare subs... 38 0.30
gb|AJ463099.1|AJ463099 AJ463099 S00002 Hordeum vulgare subs... 38 0.30
gb|AJ463100.1|AJ463100 AJ463100 S00002 Hordeum vulgare subs... 38 0.30
gb|AJ463101.1|AJ463101 AJ463101 S00002 Hordeum vulgare subs... 38 0.30
gb|BQ459714.1|BQ459714 HA08E14r HA Hordeum vulgare subsp. v... 38 0.30
gb|BQ459945.1|BQ459945 HA07K12r HA Hordeum vulgare subsp. v... 38 0.30
gb|BQ464114.1|BQ464114 HF01G09T HF Hordeum vulgare subsp. v... 38 0.30
gb|BQ466597.1|BQ466597 HT02P22r HT Hordeum vulgare subsp. v... 38 0.30
gb|BQ466908.1|BQ466908 HS01P08T HS Hordeum vulgare subsp. v... 38 0.30
gb|BQ467416.1|BQ467416 HS03K24r HS Hordeum vulgare subsp. v... 38 0.30
gb|BQ470985.1|BQ470985 HX04K02r HX Hordeum vulgare subsp. v... 38 0.30
gb|BQ657616.1|BQ657616 HA07K12u HA Hordeum vulgare subsp. v... 38 0.30
gb|BQ659690.1|BQ659690 HF01G09w HF Hordeum vulgare subsp. v... 38 0.30
gb|BQ664912.1|BQ664912 HX01G01w HX Hordeum vulgare subsp. v... 38 0.30
gb|BQ665667.1|BQ665667 HX04K02u HX Hordeum vulgare subsp. v... 38 0.30
gb|BM442559.2|BM442559 EBan01_SQ003_I08_R anther, yellow st... 38 0.30
gb|BM377032.2|BM377032 EBem05_SQ003_O19_R embryo, 14 DPA, n... 38 0.30
gb|BM368831.2|BM368831 EBem08_SQ004_L15_R embryo, 40 DPA, n... 38 0.30
gb|BM100041.2|BM100041 EBes01_SQ004_P21_R embryo sac, 4-6 D... 38 0.30
gb|BM100593.2|BM100593 EBma01_SQ005_K21_R maternal, 4 DPA, ... 38 0.30
gb|BM096590.2|BM096590 EBma05_SQ001_O19_R maternal, 12 DPA,... 38 0.30
gb|BM098049.2|BM098049 EBpi03_SQ002_G11_R pistil, 4 DPA, no... 38 0.30
gb|BM098109.2|BM098109 EBpi03_SQ002_J07_R pistil, 4 DPA, no... 38 0.30
gb|BM443517.2|BM443517 EBro02_SQ005_H20_R root, 3 week, hyd... 38 0.30
gb|BQ754099.1|BQ754099 EBca01_SQ002_N10_R carpel, pre-anthe... 38 0.30
gb|BQ759877.1|BQ759877 EBpi05_SQ004_O13_R pistil, 8 DPA, no... 38 0.30
gb|BQ763936.1|BQ763936 EBro03_SQ005_G20_R root, 3 week, wat... 38 0.30
gb|BU967403.1|BU967403 HB04D05r BC Hordeum vulgare subsp. v... 38 0.30
gb|BU975402.1|BU975402 HB31A09r BC Hordeum vulgare subsp. v... 38 0.30
gb|BU975696.1|BU975696 HB32A09r BC Hordeum vulgare subsp. v... 38 0.30
gb|BU980059.1|BU980059 HA18G17r HA Hordeum vulgare subsp. v... 38 0.30
gb|BU999623.1|BU999623 HI15C06r HI Hordeum vulgare subsp. v... 38 0.30
gb|BU999713.1|BU999713 HI15H11r HI Hordeum vulgare subsp. v... 38 0.30
gb|CA000640.1|CA000640 HS07E10u HS Hordeum vulgare subsp. v... 38 0.30
gb|CA001205.1|CA001205 HS18O23u HS Hordeum vulgare subsp. v... 38 0.30
gb|CA002596.1|CA002596 HS07P18r HS Hordeum vulgare subsp. v... 38 0.30
gb|CA008381.1|CA008381 HU10M12r HU Hordeum vulgare subsp. v... 38 0.30
gb|CA011244.1|CA011244 HT06L14u HT Hordeum vulgare subsp. v... 38 0.30
gb|CA013435.1|CA013435 HT08H04r HT Hordeum vulgare subsp. v... 38 0.30
gb|CA014459.1|CA014459 HT11F23r HT Hordeum vulgare subsp. v... 38 0.30
gb|CA020607.1|CA020607 HZ36N13r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CA021627.1|CA021627 HZ40K04r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CA022949.1|CA022949 HZ44N01r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CA022995.1|CA022995 HZ44P03r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CA023818.1|CA023818 HZ47H23r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CA026383.1|CA026383 HZ55M05r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CA028732.1|CA028732 HZ63B16r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CA029980.1|CA029980 HX05M02r HX Hordeum vulgare subsp. v... 38 0.30
gb|BJ544383.1|BJ544383 BJ544383 K. Sato unpublished cDNA li... 38 0.30
gb|BJ544781.1|BJ544781 BJ544781 K. Sato unpublished cDNA li... 38 0.30
gb|BJ545838.1|BJ545838 BJ545838 K. Sato unpublished cDNA li... 38 0.30
gb|BJ547098.1|BJ547098 BJ547098 K. Sato unpublished cDNA li... 38 0.30
gb|BJ547127.1|BJ547127 BJ547127 K. Sato unpublished cDNA li... 38 0.30
gb|BJ547420.1|BJ547420 BJ547420 K. Sato unpublished cDNA li... 38 0.30
gb|BJ548011.1|BJ548011 BJ548011 K. Sato unpublished cDNA li... 38 0.30
gb|BJ548112.1|BJ548112 BJ548112 K. Sato unpublished cDNA li... 38 0.30
gb|CB874600.1|CB874600 HX05M02w HX Hordeum vulgare subsp. v... 38 0.30
gb|CV053949.1|CV053949 BNEL105a3 Barley EST endosperm libra... 38 0.30
gb|CV054373.1|CV054373 BNEL109g8 Barley EST endosperm libra... 38 0.30
gb|CV054920.1|CV054920 BNEL114g5 Barley EST endosperm libra... 38 0.30
gb|CV057002.1|CV057002 BNEL22h9 Barley EST endosperm librar... 38 0.30
gb|CV057618.1|CV057618 BNEL29h11 Barley EST endosperm libra... 38 0.30
gb|CV061330.1|CV061330 BNEL67f10 Barley EST endosperm libra... 38 0.30
gb|CV061720.1|CV061720 BNEL71b2 Barley EST endosperm librar... 38 0.30
gb|CV061805.1|CV061805 BNEL73b10 Barley EST endosperm libra... 38 0.30
gb|CV063097.1|CV063097 BNEL86f11 Barley EST endosperm libra... 38 0.30
gb|CK122185.1|CK122185 BES1824101p07 BES1824 Hordeum vulgar... 38 0.30
gb|CK122355.1|CK122355 BES1824102p21 BES1824 Hordeum vulgar... 38 0.30
gb|CK122756.1|CK122756 BES1824105k19 BES1824 Hordeum vulgar... 38 0.30
gb|CK122992.1|CK122992 BES1824101k24 BES1824 Hordeum vulgar... 38 0.30
gb|CK123200.1|CK123200 BES1824102h12 BES1824 Hordeum vulgar... 38 0.30
gb|CK123959.1|CK123959 BES1824106e19 BES1824 Hordeum vulgar... 38 0.30
>gb|BQ763476.1|BQ763476 EBro02_SQ008_B17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_B17 5', mRNA sequence
Length = 536
Score = 248 bits (125), Expect = 2e-064
Identities = 209/236 (88%), Gaps = 1/236 (0%)
Strand = Plus / Plus
Query: 87 cttcgtcgtccagtttttctttctcgcgctctgcggcatcacggcgaaccaagggtttta 146
||||| ||||||||| ||||| |||||||||||||||||||| || ||||| || || ||
Sbjct: 302 cttcgccgtccagttcttcttcctcgcgctctgcggcatcaccgccaaccagggcttcta 361
Query: 147 cctcctgggcctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtccc 206
|||||||||||| |||||||||||||| || ||||| ||||||||||||||||| || ||
Sbjct: 362 cctcctgggcctcgacaacacgtcgcccaccttcgcttccgccatccagaactccgtgcc 421
Query: 207 ggccatcaccttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccg 266
|||||||||||||| ||||||||| ||||| |||||||||||||| ||||| ||||| ||
Sbjct: 422 ggccatcaccttcggcatggccgccgcgctccggatcgagaaggtgcggctcgaccggcg 481
Query: 267 cgacggcgtagccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtca 322
||||||||| | ||| |||| |||||| |||||||||||||||| ||| |||||||
Sbjct: 482 cgacggcgt-ggcaatgtggtgggcaccctggcgtgcgtggcgggggcgtccgtca 536
>gb|BE060220.1|BE060220 HVSMEg0011K01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011K01f, mRNA sequence
Length = 645
Score = 184 bits (93), Expect = 2e-045
Identities = 128/140 (91%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 31 aagaactggacgctggggtgcgtgtacctcatcgggcactgcctgtcgtggtctgggtgg 90
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| |||||||| ||||||||||| || |||| | ||||||||||||
Sbjct: 91 ctggtgctgcaggcacccgtgctcaagaagtaccccgcgaagctgtcggtcacctcctac 150
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 151 acctgcttcttcggcgtcat 170
>gb|BI957153.1|BI957153 HVSMEn0007M22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007M22f, mRNA sequence
Length = 1133
Score = 184 bits (93), Expect = 2e-045
Identities = 128/140 (91%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 81 aagaactggacgctggggtgcgtgtacctcatcgggcactgcctgtcgtggtctgggtgg 140
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| |||||||| ||||||||||| || |||| | ||||||||||||
Sbjct: 141 ctggtgctgcaggcacccgtgctcaagaagtaccccgcgaagctgtcggtcacctcctac 200
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 201 acctgcttcttcggcgtcat 220
>gb|CA030254.1|CA030254 HX06I12r HX Hordeum vulgare subsp. vulgare cDNA clone HX06I12
5-PRIME, mRNA sequence
Length = 651
Score = 184 bits (93), Expect = 2e-045
Identities = 128/140 (91%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 202 aagaactggacgctggggtgcgtgtacctcatcgggcactgcctgtcgtggtctgggtgg 261
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| |||||||| ||||||||||| || |||| | ||||||||||||
Sbjct: 262 ctggtgctgcaggcacccgtgctcaagaagtaccccgcgaagctgtcggtcacctcctac 321
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 322 acctgcttcttcggcgtcat 341
Score = 159 bits (80), Expect = 1e-037
Identities = 118/131 (90%)
Strand = Plus / Plus
Query: 222 catggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcgtagccaa 281
||||||||| ||||| |||||||||||||| |||| ||||| ||||||||||| || ||
Sbjct: 4 catggccgccgcgctccggatcgagaaggtgaggctcgaccggcgcgacggcgtggcaaa 63
Query: 282 ggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctacaagggccc 341
||||| |||||| |||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 64 ggtggtgggcaccctggcgtgcgtggcgggggcatccgtcatcacgctctaccagggccc 123
Query: 342 caccatcttcg 352
||||||||||
Sbjct: 124 gaccatcttcg 134
>gb|BM443422.2|BM443422 EBro02_SQ005_B06_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_B06 5', mRNA sequence
Length = 243
Score = 149 bits (75), Expect = 1e-034
Identities = 108/119 (90%)
Strand = Plus / Plus
Query: 433 gtgtacctgatcgggcactgcctgtcgtggtccggctggctggtgctgcaggctcccgtg 492
|||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 1 gtgtacctcatcgggcactgcctgtcgtggtctgggtggctggtgctgcaggcacccgtg 60
Query: 493 ctgaagaagtacccggcacggctggccgtcacctcctacacctgcttcttcggcgtcat 551
|| ||||||||||| || |||| | ||||||||||||||||||||||||||||||||
Sbjct: 61 ctcaagaagtaccccgcgaagctgtcggtcacctcctacacctgcttcttcggcgtcat 119
>gb|BF623053.2|BF623053 HVSMEa0012M22f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0012M22f, mRNA sequence
Length = 833
Score = 85.7 bits (43), Expect = 1e-015
Identities = 176/218 (80%), Gaps = 2/218 (0%)
Strand = Plus / Plus
Query: 124 atcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcg 183
|||||||||||||| ||||| ||||| ||||| ||| || || ||||||||| | ||||
Sbjct: 353 atcacggcgaaccaggggttctacctgctggggctgtaccacctgtcgccgacctacgcg 412
Query: 184 tccgccatccagaactcggtcccggccatcaccttcgccatggccgcggcgctgcggatc 243
||||| ||||||||| ||| |||||||||||||||| ||||||||| ||| ||| |
Sbjct: 413 tccgcgatccagaacatggtgccggccatcaccttcgtgctggccgcggtgctccggctg 472
Query: 244 gagaaggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacgctggcgtgc 303
||| |||| |||| ||| || |||| || |||||||||| ||||||| ||| | ||
Sbjct: 473 gagcaggtggacctgggccggcggcacggggtggccaaggtggtgggcacggtggtgagc 532
Query: 304 gt-ggcggnggcatccgtcatcacgctctacaagggcc 340
|| ||||| | || | || |||||||||||||||||||
Sbjct: 533 gtcggcggcgcca-cggtgatcacgctctacaagggcc 569
>gb|BF621150.3|BF621150 HVSMEa0004J06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0004J06f, mRNA sequence
Length = 735
Score = 85.7 bits (43), Expect = 1e-015
Identities = 176/218 (80%), Gaps = 2/218 (0%)
Strand = Plus / Plus
Query: 124 atcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcg 183
|||||||||||||| ||||| ||||| ||||| ||| || || ||||||||| | ||||
Sbjct: 99 atcacggcgaaccaggggttctacctgctggggctgtaccacctgtcgccgacctacgcg 158
Query: 184 tccgccatccagaactcggtcccggccatcaccttcgccatggccgcggcgctgcggatc 243
||||| ||||||||| ||| |||||||||||||||| ||||||||| ||| ||| |
Sbjct: 159 tccgcgatccagaacatggtgccggccatcaccttcgtgctggccgcggtgctccggctg 218
Query: 244 gagaaggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacgctggcgtgc 303
||| |||| |||| ||| || |||| || |||||||||| ||||||| ||| | ||
Sbjct: 219 gagcaggtggacctgggccggcggcacggggtggccaaggtggtgggcacggtggtgagc 278
Query: 304 gt-ggcggnggcatccgtcatcacgctctacaagggcc 340
|| ||||| | || | || |||||||||||||||||||
Sbjct: 279 gtcggcggcgcca-cggtgatcacgctctacaagggcc 315
>gb|BF628008.2|BF628008 HVSMEb0002J11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0002J11f, mRNA sequence
Length = 665
Score = 73.8 bits (37), Expect = 5e-012
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 124 atcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcg 183
|||||||||||||| ||||| ||||| ||||| ||| || || ||||||||| | ||||
Sbjct: 273 atcacggcgaaccaggggttctacctgctggggctgtaccacctgtcgccgacctacgcg 332
Query: 184 tccgccatccagaactcggtcccggccatcaccttcg 220
||||| ||||||||| || ||||||||||||||||
Sbjct: 333 tccgcgatccagaacatggagccggccatcaccttcg 369
>gb|BI953372.1|BI953372 HVSMEm0012F09f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0012F09f, mRNA sequence
Length = 831
Score = 65.9 bits (33), Expect = 1e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 124 atcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcg 183
|||||||||||||| ||||| ||||| ||||| || | || ||||||||| | ||||
Sbjct: 121 atcacggcgaaccaggggttctacctgctgggggtgtgccacctgtcgccgacctacgcg 180
Query: 184 tccgccatccagaactcggtcccggccatcaccttcg 220
||||| ||||||||| ||| ||||||||||||||||
Sbjct: 181 tccgcgatccagaacatggtgccggccatcaccttcg 217
Score = 38.2 bits (19), Expect = 0.30
Identities = 57/70 (81%)
Strand = Plus / Plus
Query: 415 aactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctggctg 474
|||||||||||||| ||||| | | | |||| |||||||| || ||||| || ||| ||
Sbjct: 406 aactggacgctgggctgcgtcttcatactcggccactgcctctcctggtcgggatggatg 465
Query: 475 gtgctgcagg 484
||||| ||||
Sbjct: 466 gtgctccagg 475
>gb|CA017406.1|CA017406 HV05B20r HV Hordeum vulgare subsp. vulgare cDNA clone HV05B20
5-PRIME, mRNA sequence
Length = 500
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 342 caccatcttcggtcccggcggcggcggcggc 372
|||||||||||| | ||||||||||||||||
Sbjct: 49 caccatcttcggcctcggcggcggcggcggc 79
>gb|AF334759.1|AF334759 Hordeum vulgare homeodomain protein JUBEL2 (JuBel2) gene, complete
cds
Length = 9112
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 342 caccatcttcggtcccggcggcggcggcggc 372
|||||||||||| | ||||||||||||||||
Sbjct: 5992 caccatcttcggcctcggcggcggcggcggc 6022
>gb|BI781085.2|BI781085 EBma03_SQ001_G01_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ001_G01 5', mRNA sequence
Length = 496
Score = 44.1 bits (22), Expect = 0.005
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 345 catcttcggtcccggcggcggcggcg 370
||||||||| ||||||||||||||||
Sbjct: 37 catcttcggccccggcggcggcggcg 12
>gb|CV058643.1|CV058643 BNEL3C3 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL3C3 5' similar to histidine-containing
phosphotransfer protein, mRNA sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 358 ggcggcggcggcggcctcgag 378
|||||||||||||||||||||
Sbjct: 21 ggcggcggcggcggcctcgag 1
>gb|AL508424.1|AL508424 AL508424 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08L13V 5',
mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 215 ccttcgccatggccgcggcg 234
||||||||||||||||||||
Sbjct: 49 ccttcgccatggccgcggcg 30
>gb|AL511250.1|AL511250 AL511250 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07H12u 3',
mRNA sequence
Length = 565
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 87 ggaccgccgcgacggcgtag 68
>gb|BF259468.2|BF259468 HVSMEf0019D03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019D03f, mRNA sequence
Length = 768
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 215 ccttcgccatggccgcggcg 234
||||||||||||||||||||
Sbjct: 103 ccttcgccatggccgcggcg 84
>gb|BI957958.1|BI957958 HVSMEn0012H20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0012H20f, mRNA sequence
Length = 834
Score = 40.1 bits (20), Expect = 0.075
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 124 atcacggcgaaccaagggttttacctcctggg 155
|||||||||||||| ||||| ||||| |||||
Sbjct: 340 atcacggcgaaccaggggttctacctgctggg 371
>gb|BG416095.1|BG416095 HVSMEk0009L20f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009L20f, mRNA sequence
Length = 945
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 134 cggcggcggcggcggcctcg 115
>gb|BI959045.1|BI959045 HVSMEn0017O10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017O10f, mRNA sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 90 ggaccgccgcgacggcgtag 71
>gb|BE194908.3|BE194908 HVSMEh0087I16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0087I16f, mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 289 cggcggcggcggcggcctcg 270
>gb|BM374763.1|BM374763 EBma05_SQ002_L20_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_L20 5', mRNA sequence
Length = 337
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 85 ggaccgccgcgacggcgtag 66
>gb|AJ461913.1|AJ461913 AJ461913 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051C04F1, mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 44 cggcggcggcggcggcctcg 25
>gb|BQ458969.1|BQ458969 HA02L09r HA Hordeum vulgare subsp. vulgare cDNA clone HA02L09
5-PRIME, mRNA sequence
Length = 436
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 91 ggaccgccgcgacggcgtag 72
>gb|BM376715.2|BM376715 EBem05_SQ003_A10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_A10 5', mRNA sequence
Length = 169
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 109 ggaccgccgcgacggcgtag 90
>gb|BM375145.2|BM375145 EBem06_SQ002_H22_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_H22 5', mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 353 gtcccggcggcggcggcggc 372
||||||||||||||||||||
Sbjct: 95 gtcccggcggcggcggcggc 76
>gb|BI779903.2|BI779903 EBem07_SQ001_I05_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ001_I05 5', mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 215 ccttcgccatggccgcggcg 234
||||||||||||||||||||
Sbjct: 52 ccttcgccatggccgcggcg 33
>gb|BM097956.2|BM097956 EBpi03_SQ002_C10_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_C10 5', mRNA sequence
Length = 346
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 90 ggaccgccgcgacggcgtag 71
>gb|BM374275.2|BM374275 EBpi03_SQ003_C16_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_C16 5', mRNA sequence
Length = 365
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 94 ggaccgccgcgacggcgtag 75
>gb|BM374280.2|BM374280 EBpi03_SQ003_C23_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_C23 5', mRNA sequence
Length = 483
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 101 ggaccgccgcgacggcgtag 82
>gb|BM098769.2|BM098769 EBpi05_SQ002_A02_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ002_A02 5', mRNA sequence
Length = 123
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 90 ggaccgccgcgacggcgtag 71
>gb|BI778710.2|BI778710 EBro01_SQ001_C17_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_C17 5', mRNA sequence
Length = 449
Score = 40.1 bits (20), Expect = 0.075
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagct 380
|||||||||||||||| |||||||
Sbjct: 225 cggcggcggcggcggcgtcgagct 202
>gb|BQ763939.1|BQ763939 EBro03_SQ005_G23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_G23 5', mRNA sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 395 aggcggtggccggcgacaag 414
||||||||||||||||||||
Sbjct: 468 aggcggtggccggcgacaag 487
>gb|BQ766492.1|BQ766492 EBro08_SQ006_P05_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P05 5', mRNA sequence
Length = 209
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 86 ggaccgccgcgacggcgtag 67
>gb|BU979685.1|BU979685 HA16O24r HA Hordeum vulgare subsp. vulgare cDNA clone HA16O24
5-PRIME, mRNA sequence
Length = 350
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 80 ggaccgccgcgacggcgtag 61
>gb|BU984068.1|BU984068 HA31O09r HA Hordeum vulgare subsp. vulgare cDNA clone HA31O09
5-PRIME, mRNA sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 25 cggcggcggcggcggcctcg 6
>gb|BU995819.1|BU995819 HM11H11r HM Hordeum vulgare subsp. vulgare cDNA clone HM11H11
5-PRIME, mRNA sequence
Length = 441
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 258 ggaccgccgcgacggcgtag 277
||||||||||||||||||||
Sbjct: 83 ggaccgccgcgacggcgtag 64
>gb|BU996602.1|BU996602 HM14C09r HM Hordeum vulgare subsp. vulgare cDNA clone HM14C09
5-PRIME, mRNA sequence
Length = 647
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 24 cggcggcggcggcggcctcg 5
>gb|BU997610.1|BU997610 HI08H20r HI Hordeum vulgare subsp. vulgare cDNA clone HI08H20
5-PRIME, mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 215 ccttcgccatggccgcggcg 234
||||||||||||||||||||
Sbjct: 40 ccttcgccatggccgcggcg 21
>gb|BU999635.1|BU999635 HI15C20r HI Hordeum vulgare subsp. vulgare cDNA clone HI15C20
5-PRIME, mRNA sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 353 gtcccggcggcggcggcggc 372
||||||||||||||||||||
Sbjct: 89 gtcccggcggcggcggcggc 70
>gb|BU999969.1|BU999969 HS16J06u HS Hordeum vulgare subsp. vulgare cDNA clone HS16J06
3-PRIME, mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 395 aggcggtggccggcgacaag 414
||||||||||||||||||||
Sbjct: 391 aggcggtggccggcgacaag 372
>gb|CA007010.1|CA007010 HU06H10r HU Hordeum vulgare subsp. vulgare cDNA clone HU06H10
5-PRIME, mRNA sequence
Length = 488
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 25 cggcggcggcggcggcctcg 6
>gb|CA007569.1|CA007569 HU08F21r HU Hordeum vulgare subsp. vulgare cDNA clone HU08F21
5-PRIME, mRNA sequence
Length = 157
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 25 cggcggcggcggcggcctcg 6
>gb|CA008895.1|CA008895 HU12H09r HU Hordeum vulgare subsp. vulgare cDNA clone HU12H09
5-PRIME, mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 25 cggcggcggcggcggcctcg 6
>gb|CA019570.1|CA019570 HV12G16r HV Hordeum vulgare subsp. vulgare cDNA clone HV12G16
5-PRIME, mRNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 25 cggcggcggcggcggcctcg 6
>gb|CA027469.1|CA027469 HZ59A09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59A09
5-PRIME, mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 25 cggcggcggcggcggcctcg 6
>gb|CB878931.1|CB878931 HP10F15T HP Hordeum vulgare subsp. vulgare cDNA clone HP10F15
5-PRIME, mRNA sequence
Length = 532
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 356 ccggcggcggcggcggcctc 375
||||||||||||||||||||
Sbjct: 70 ccggcggcggcggcggcctc 51
>gb|CB882452.1|CB882452 HL01O10w HL Hordeum vulgare subsp. vulgare cDNA clone HL01O10
3-PRIME, mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 353 gtcccggcggcggcggcggc 372
||||||||||||||||||||
Sbjct: 110 gtcccggcggcggcggcggc 91
>dbj|AB024006.1| Hordeum vulgare naat-B and naat-A genes for nicotianamine
aminotransferase, complete cds
Length = 10966
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 6563 cggcggcggcggcggcctcg 6544
>dbj|D88273.2| Hordeum vulgare naat-A mRNA for nicotianamine aminotransferase A,
complete cds
Length = 1660
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 107 cggcggcggcggcggcctcg 88
>gb|AL500960.1|AL500960 AL500960 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02I21u 3', mRNA sequence
Length = 548
Score = 38.2 bits (19), Expect = 0.30
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 200 cggtcccggccatcaccttcgccatgg 226
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Sbjct: 356 cggtcccggccatctccttggccatgg 382
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 161,745
Number of Sequences: 312970
Number of extensions: 161745
Number of successful extensions: 78199
Number of sequences better than 0.5: 173
Number of HSP's better than 0.5 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77538
Number of HSP's gapped (non-prelim): 500
length of query: 559
length of database: 175,134,539
effective HSP length: 19
effective length of query: 540
effective length of database: 169,188,109
effective search space: 91361578860
effective search space used: 91361578860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)