BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871878.2.1
(950 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ547904.1|BJ547904 BJ547904 K. Sato unpublished cDNA li... 654 0.0
gb|CK124463.1|CK124463 BES1824109d17 BES1824 Hordeum vulgar... 565 e-160
gb|BU979918.1|BU979918 HA17M18r HA Hordeum vulgare subsp. v... 551 e-155
gb|AV915820.1|AV915820 AV915820 K. Sato unpublished cDNA li... 505 e-142
gb|BI958574.1|BI958574 HVSMEn0015L12f Hordeum vulgare rachi... 496 e-139
gb|BI957438.1|BI957438 HVSMEn0009I23f Hordeum vulgare rachi... 361 3e-098
gb|CB882307.1|CB882307 HL01H23w HL Hordeum vulgare subsp. v... 297 3e-079
gb|CA017471.1|CA017471 HV05E22r HV Hordeum vulgare subsp. v... 135 3e-030
gb|CB879349.1|CB879349 HP11N15T HP Hordeum vulgare subsp. v... 135 3e-030
gb|AL505147.1|AL505147 AL505147 Hordeum vulgare Barke roots... 129 2e-028
gb|BU982278.1|BU982278 HA26A18r HA Hordeum vulgare subsp. v... 129 2e-028
gb|BI954503.1|BI954503 HVSMEm0018E24f Hordeum vulgare green... 127 7e-028
gb|BQ470611.1|BQ470611 HX03H22r HX Hordeum vulgare subsp. v... 127 7e-028
gb|CA004075.1|CA004075 HS16H11r HS Hordeum vulgare subsp. v... 125 3e-027
gb|BJ547041.1|BJ547041 BJ547041 K. Sato unpublished cDNA li... 121 4e-026
gb|BF631172.1|BF631172 HVSMEb0015C21f Hordeum vulgare seedl... 117 7e-025
gb|BF261472.2|BF261472 HV_CEa0001G01f Hordeum vulgare seedl... 117 7e-025
gb|AV915891.1|AV915891 AV915891 K. Sato unpublished cDNA li... 117 7e-025
gb|BU972129.1|BU972129 HB20L03r BC Hordeum vulgare subsp. v... 117 7e-025
gb|AV914112.1|AV914112 AV914112 K. Sato unpublished cDNA li... 84 1e-014
gb|AL503252.1|AL503252 AL503252 Hordeum vulgare Barke roots... 80 2e-013
gb|AL503569.1|AL503569 AL503569 Hordeum vulgare Barke roots... 80 2e-013
gb|AL506538.1|AL506538 AL506538 Hordeum vulgare Barke devel... 80 2e-013
gb|AL506572.1|AL506572 AL506572 Hordeum vulgare Barke devel... 80 2e-013
gb|AL506691.1|AL506691 AL506691 Hordeum vulgare Barke devel... 80 2e-013
gb|AL507716.1|AL507716 AL507716 Hordeum vulgare Barke devel... 80 2e-013
gb|BF255870.2|BF255870 HVSMEf0008A22f Hordeum vulgare seedl... 80 2e-013
gb|BF260905.2|BF260905 HVSMEf0023E01f Hordeum vulgare seedl... 80 2e-013
gb|BE454127.2|BE454127 HVSMEh0080M10f Hordeum vulgare 5-45 ... 80 2e-013
gb|BI959050.1|BI959050 HVSMEn0017O17f Hordeum vulgare rachi... 80 2e-013
gb|BI960239.1|BI960239 HVSMEn0023O02f Hordeum vulgare rachi... 80 2e-013
gb|BI960443.1|BI960443 HVSMEn0024J22f Hordeum vulgare rachi... 80 2e-013
gb|AW983194.3|AW983194 HVSMEg0008K01f Hordeum vulgare pre-a... 80 2e-013
gb|AV912858.1|AV912858 AV912858 K. Sato unpublished cDNA li... 80 2e-013
gb|AV913569.1|AV913569 AV913569 K. Sato unpublished cDNA li... 80 2e-013
gb|AV913652.1|AV913652 AV913652 K. Sato unpublished cDNA li... 80 2e-013
gb|AV913736.1|AV913736 AV913736 K. Sato unpublished cDNA li... 80 2e-013
gb|AV915529.1|AV915529 AV915529 K. Sato unpublished cDNA li... 80 2e-013
gb|AV915934.1|AV915934 AV915934 K. Sato unpublished cDNA li... 80 2e-013
gb|AV916097.1|AV916097 AV916097 K. Sato unpublished cDNA li... 80 2e-013
gb|AV916858.1|AV916858 AV916858 K. Sato unpublished cDNA li... 80 2e-013
gb|AV917132.1|AV917132 AV917132 K. Sato unpublished cDNA li... 80 2e-013
gb|AV917183.1|AV917183 AV917183 K. Sato unpublished cDNA li... 80 2e-013
gb|BM816179.1|BM816179 HC02E01_T3.ab1 HC Hordeum vulgare su... 80 2e-013
gb|BJ450393.1|BJ450393 BJ450393 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ462500.1|BJ462500 BJ462500 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ463235.1|BJ463235 BJ463235 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ463694.1|BJ463694 BJ463694 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ464032.1|BJ464032 BJ464032 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ464187.1|BJ464187 BJ464187 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ464470.1|BJ464470 BJ464470 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ464957.1|BJ464957 BJ464957 K. Sato unpublished cDNA li... 80 2e-013
gb|BJ465124.1|BJ465124 BJ465124 K. Sato unpublished cDNA li... 80 2e-013
gb|BQ471323.1|BQ471323 HV02B15r HV Hordeum vulgare subsp. v... 80 2e-013
gb|BQ472096.1|BQ472096 HV04G11r HV Hordeum vulgare subsp. v... 80 2e-013
gb|BQ472320.1|BQ472320 HB09P05T BC Hordeum vulgare subsp. v... 80 2e-013
gb|BQ472535.1|BQ472535 HB09E05T BC Hordeum vulgare subsp. v... 80 2e-013
gb|BM100357.2|BM100357 EBma01_SQ001_P14_R maternal, 4 DPA, ... 80 2e-013
gb|BM096945.2|BM096945 EBpi07_SQ001_O03_R pistil, 12 DPA, n... 80 2e-013
gb|BM443503.2|BM443503 EBro02_SQ005_G14_R root, 3 week, hyd... 80 2e-013
gb|BI777152.2|BI777152 EBro03_SQ002_C19_R root, 3 week, wat... 80 2e-013
gb|BM371206.2|BM371206 EBro04_SQ003_N12_R root, 3 week, sal... 80 2e-013
gb|BQ762329.1|BQ762329 EBro01_SQ005_C16_R root, 3 week, hyd... 80 2e-013
gb|BQ764503.1|BQ764503 EBca01_SQ004_F05_R carpel, pre-anthe... 80 2e-013
gb|BU968354.1|BU968354 HB07E05r BC Hordeum vulgare subsp. v... 80 2e-013
gb|BU968575.1|BU968575 HB07P05r BC Hordeum vulgare subsp. v... 80 2e-013
gb|BU970086.1|BU970086 HB13I23r BC Hordeum vulgare subsp. v... 80 2e-013
gb|BU970369.1|BU970369 HB14G11r BC Hordeum vulgare subsp. v... 80 2e-013
gb|BU973256.1|BU973256 HB24E24r BC Hordeum vulgare subsp. v... 80 2e-013
gb|BU987452.1|BU987452 HF14M18r HF Hordeum vulgare subsp. v... 80 2e-013
gb|BU988522.1|BU988522 HF17O04r HF Hordeum vulgare subsp. v... 80 2e-013
gb|BU994833.1|BU994833 HM08F16r HM Hordeum vulgare subsp. v... 80 2e-013
gb|BU997112.1|BU997112 HI06P03r HI Hordeum vulgare subsp. v... 80 2e-013
gb|CA018953.1|CA018953 HV10D08r HV Hordeum vulgare subsp. v... 80 2e-013
gb|CA029444.1|CA029444 HZ65D19r HZ Hordeum vulgare subsp. v... 80 2e-013
gb|CA032127.1|CA032127 HX12B15r HX Hordeum vulgare subsp. v... 80 2e-013
gb|CB883216.1|CB883216 HQ01I23w HQ Hordeum vulgare subsp. v... 80 2e-013
gb|BF267125.3|BF267125 HV_CEa0017A10f Hordeum vulgare seedl... 78 6e-013
gb|AL505134.1|AL505134 AL505134 Hordeum vulgare Barke roots... 74 9e-012
gb|BI946633.1|BI946633 HVSMEl0001F12f Hordeum vulgare spike... 74 9e-012
gb|BI959464.1|BI959464 HVSMEn0019M08f Hordeum vulgare rachi... 74 9e-012
gb|BI960578.1|BI960578 HVSMEn0025C16f Hordeum vulgare rachi... 74 9e-012
gb|BE231175.2|BE231175 HVSMEg0017G06f Hordeum vulgare pre-a... 74 9e-012
gb|AV910273.1|AV910273 AV910273 K. Sato unpublished cDNA li... 74 9e-012
gb|AV913541.1|AV913541 AV913541 K. Sato unpublished cDNA li... 74 9e-012
gb|AV914047.1|AV914047 AV914047 K. Sato unpublished cDNA li... 74 9e-012
gb|BJ454281.1|BJ454281 BJ454281 K. Sato unpublished cDNA li... 74 9e-012
gb|BJ465044.1|BJ465044 BJ465044 K. Sato unpublished cDNA li... 74 9e-012
gb|BM372796.2|BM372796 EBpi05_SQ003_P06_R pistil, 8 DPA, no... 74 9e-012
gb|BM443026.2|BM443026 EBro02_SQ002_D20_R root, 3 week, hyd... 74 9e-012
gb|BQ759253.1|BQ759253 EBpi01_SQ003_D23_R pistil, 1 DPA, no... 74 9e-012
gb|CA028111.1|CA028111 HZ61A12r HZ Hordeum vulgare subsp. v... 74 9e-012
gb|CB883635.1|CB883635 HQ02N10w HQ Hordeum vulgare subsp. v... 74 9e-012
gb|AL508905.1|AL508905 AL508905 Hordeum vulgare Barke devel... 72 4e-011
gb|BF260651.2|BF260651 HVSMEf0022J07f Hordeum vulgare seedl... 72 4e-011
gb|CB883563.1|CB883563 HQ02K03w HQ Hordeum vulgare subsp. v... 72 4e-011
gb|BE519855.1|BE519855 HV_CEb0021H15f Hordeum vulgare seedl... 70 1e-010
gb|AV909217.1|AV909217 AV909217 K. Sato unpublished cDNA li... 70 1e-010
gb|AL503719.1|AL503719 AL503719 Hordeum vulgare Barke roots... 68 6e-010
gb|AL505043.1|AL505043 AL505043 Hordeum vulgare Barke roots... 68 6e-010
gb|BI959520.1|BI959520 HVSMEn0020A11f Hordeum vulgare rachi... 68 6e-010
gb|AV914111.1|AV914111 AV914111 K. Sato unpublished cDNA li... 68 6e-010
gb|BJ462617.1|BJ462617 BJ462617 K. Sato unpublished cDNA li... 68 6e-010
gb|BJ464409.1|BJ464409 BJ464409 K. Sato unpublished cDNA li... 68 6e-010
gb|CA024332.1|CA024332 HZ49A08r HZ Hordeum vulgare subsp. v... 68 6e-010
gb|BI956677.1|BI956677 HVSMEn0004L08f Hordeum vulgare rachi... 66 2e-009
gb|AV911101.1|AV911101 AV911101 K. Sato unpublished cDNA li... 66 2e-009
gb|BJ477449.1|BJ477449 BJ477449 K. Sato unpublished cDNA li... 66 2e-009
gb|BM101485.2|BM101485 EBpi01_SQ003_P22_R pistil, 1 DPA, no... 64 9e-009
gb|BM370094.2|BM370094 EBro08_SQ002_P14_R root, 3 week, dro... 64 9e-009
gb|AL504464.1|AL504464 AL504464 Hordeum vulgare Barke roots... 62 4e-008
gb|CA025273.1|CA025273 HZ51K17r HZ Hordeum vulgare subsp. v... 62 4e-008
gb|BI957506.1|BI957506 HVSMEn0009O15f Hordeum vulgare rachi... 60 1e-007
gb|AV916290.1|AV916290 AV916290 K. Sato unpublished cDNA li... 60 1e-007
gb|BM816178.1|BM816178 HC01C12_T3.ab1 HC Hordeum vulgare su... 60 1e-007
gb|BQ471213.1|BQ471213 HV01J15T HV Hordeum vulgare subsp. v... 60 1e-007
gb|BQ764525.1|BQ764525 EBca01_SQ004_K01_R carpel, pre-anthe... 60 1e-007
gb|AL505227.1|AL505227 AL505227 Hordeum vulgare Barke roots... 58 6e-007
gb|BF254843.2|BF254843 HVSMEf0005D08f Hordeum vulgare seedl... 58 6e-007
gb|AV913654.1|AV913654 AV913654 K. Sato unpublished cDNA li... 58 6e-007
gb|AV913739.1|AV913739 AV913739 K. Sato unpublished cDNA li... 58 6e-007
gb|AV914462.1|AV914462 AV914462 K. Sato unpublished cDNA li... 58 6e-007
gb|CA028466.1|CA028466 HZ62B03r HZ Hordeum vulgare subsp. v... 58 6e-007
gb|CK123742.1|CK123742 BES1824105d21 BES1824 Hordeum vulgar... 56 2e-006
gb|BI959986.1|BI959986 HVSMEn0022L24f Hordeum vulgare rachi... 54 9e-006
gb|BI958511.1|BI958511 HVSMEn0015G01f Hordeum vulgare rachi... 52 3e-005
gb|BI959302.1|BI959302 HVSMEn0019C13f Hordeum vulgare rachi... 52 3e-005
gb|BI960675.1|BI960675 HVSMEn0025M06f Hordeum vulgare rachi... 52 3e-005
gb|BM096716.2|BM096716 EBma07_SQ001_G01_R maternal, 21 DPA,... 52 3e-005
gb|BM442828.2|BM442828 EBro02_SQ001_H02_R root, 3 week, hyd... 52 3e-005
gb|CA027837.1|CA027837 HZ60D01r HZ Hordeum vulgare subsp. v... 52 3e-005
gb|AW982946.2|AW982946 HVSMEg0004K04f Hordeum vulgare pre-a... 48 5e-004
gb|AV833065.1|AV833065 AV833065 K. Sato unpublished cDNA li... 46 0.002
gb|BE558803.2|BE558803 HV_CEb0020G21f Hordeum vulgare seedl... 46 0.002
gb|BI958948.1|BI958948 HVSMEn0017G03f Hordeum vulgare rachi... 46 0.002
gb|BG343225.2|BG343225 HVSMEg0005C09f Hordeum vulgare pre-a... 46 0.002
gb|BF256552.2|BF256552 HVSMEf0010F04f Hordeum vulgare seedl... 44 0.008
gb|BE455988.2|BE455988 HVSMEg0019B24f Hordeum vulgare pre-a... 44 0.008
gb|BI959906.1|BI959906 HVSMEn0022F08f Hordeum vulgare rachi... 44 0.008
gb|BF256909.2|BF256909 HVSMEf0011F12f Hordeum vulgare seedl... 42 0.033
gb|BU988788.1|BU988788 HF18L12r HF Hordeum vulgare subsp. v... 42 0.033
gb|CK124252.1|CK124252 BES1824108b19 BES1824 Hordeum vulgar... 42 0.033
gb|AY970701.1| Hordeum vulgare subsp. vulgare cultivar Igri... 42 0.033
gb|AY970702.1| Hordeum vulgare subsp. vulgare cultivar Opti... 42 0.033
gb|AY970704.1| Hordeum vulgare subsp. vulgare cultivar Triu... 42 0.033
gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673... 42 0.033
gb|BG301258.2|BG301258 HVSMEb0020E14f Hordeum vulgare seedl... 40 0.13
>gb|BJ547904.1|BJ547904 BJ547904 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41g23 5', mRNA sequence
Length = 681
Score = 654 bits (330), Expect = 0.0
Identities = 531/598 (88%)
Strand = Plus / Minus
Query: 1 accataaactgtcattggttgtcttcgtagtgcctgtgcaacaaaattgctgaccacgcg 60
|||||| ||||||||||| ||| | || ||||||||||||||||||||||| ||||| ||
Sbjct: 598 accatatactgtcattggatgtttgcgcagtgcctgtgcaacaaaattgctaaccacacg 539
Query: 61 gccatcatcgagacacatacgaggaccatatgtattgaaaatgcgggcaatacgcacctc 120
|||||||| || ||||||||||| |||||||||||||| || || ||||| || ||| |
Sbjct: 538 accatcatccaggcacatacgagggccatatgtattgaagatacgagcaattcgtaccgc 479
Query: 121 aacaccagcaccacgatgatagtccatagttgaagtctcggctgttctcttcccctcatc 180
||||||| |||||||||| ||||||||||| | ||||| |||||||| || ||||||||
Sbjct: 478 aacaccaccaccacgatggtagtccatagtcaaggtctctgctgttcttttgccctcatc 419
Query: 181 ataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgtggatg 240
||| || || |||||||| ||||||||||| |||||||| || | ||||||||| |||||
Sbjct: 418 atagcaacttctaacacctataggattaacatgcccccaataagtctccttctgcggatg 359
Query: 241 ctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcg 300
||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct: 358 ctcaagtgggtcaccataaacttcacttgtgctggtcaacaagaaccttgcaccaattcg 299
Query: 301 ctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtcttgattgg 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 298 ctttgccagacccaacatattcaaggttcccatgacatttgtcttgatcgtcttgatggg 239
Query: 361 gttatacttgtaatgaacgggcgacgcggggcatgcgaggtggtagatccggtcgacata 420
||| || ||||| || |||||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 238 gttgtatttgtagtgcacgggcgatgcggggcacgcgaggtggtagatccggtcgacctc 179
Query: 421 aaagaggattggttcgactacatcgtggcggagcagctcgaaccgggggttccggaggtg 480
| ||||| || ||||| || ||||| |||||||||||||||| ||||||||| |||||
Sbjct: 178 gagaaggatgggctcgacgacgtcgtgtcggagcagctcgaacctggggttccgcaggtg 119
Query: 481 gtgcgcgacgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtcccc 540
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 118 gtgcgcgacgttctccttcctcccggtgaagaagttgtccaccacgatcacgctgtcccc 59
Query: 541 ctgctctaggagccggtcgacgaggtggctgccgacgaaccctgccccgcctgtgacg 598
|||||| || |||| |||||||||||||||||| ||||| || |||||||| ||||||
Sbjct: 58 ctgctccagcagcctgtcgacgaggtggctgcccacgaagcccgccccgccggtgacg 1
>gb|CK124463.1|CK124463 BES1824109d17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D179 5-PRIME, mRNA sequence
Length = 694
Score = 565 bits (285), Expect = e-160
Identities = 448/501 (89%), Gaps = 1/501 (0%)
Strand = Plus / Minus
Query: 134 cgatgatagtccatagttgaag-tctcggctgttctcttcccctcatcataacagctcct 192
||||| ||||||||||| ||| |||| |||||||| || ||||||||||| || || ||
Sbjct: 694 cgatggtagtccatagtcaaaggtctctgctgttcttttgccctcatcatagcaacttct 635
Query: 193 aacaccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatc 252
|||||| ||||||||||| |||||||| || | ||||||||| |||||||||||||| ||
Sbjct: 634 aacacctataggattaacatgcccccaataagtctccttctgcggatgctcaagtgggtc 575
Query: 253 accataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacc 312
||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||
Sbjct: 574 accataaacttcacttgtgctggtcaacaagaaccttgcaccaattcgctttgccagacc 515
Query: 313 caacatattcaaagttcccatgacatttgtcttgatcgtcttgattgggttatacttgta 372
|||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 514 caacatattcaaggttcccatgacatttgtcttgatcgtcttgatggggttgtatttgta 455
Query: 373 atgaacgggcgacgcggggcatgcgaggtggtagatccggtcgacataaaagaggattgg 432
|| |||||||| |||||||| ||||||||||||||||||||||| | | ||||| ||
Sbjct: 454 gtgcacgggcgatgcggggcacgcgaggtggtagatccggtcgacctcgagaaggatggg 395
Query: 433 ttcgactacatcgtggcggagcagctcgaaccgggggttccggaggtggtgcgcgacgtt 492
||||| || ||||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 394 ctcgacgacgtcgtgtcggagcagctcgaacctggggttccgcaggtggtgcgcgacgtt 335
Query: 493 ctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtccccctgctctaggag 552
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct: 334 ctccttcctcccggtgaagaagttgtccaccacgatcacgctgtccccctgctccagcag 275
Query: 553 ccggtcgacgaggtggctgccgacgaaccctgccccgcctgtgacgacgacgcggcgctg 612
|| |||||||||||||||||| ||||| || |||||||| ||||||||||||||||| |
Sbjct: 274 cctgtcgacgaggtggctgcccacgaagcccgccccgccggtgacgacgacgcggcgggg 215
Query: 613 cggcgggcggaagccggcggg 633
|||||||||||| || |||||
Sbjct: 214 cggcgggcggaaacccgcggg 194
Score = 101 bits (51), Expect = 4e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 702 agaggtagggccggaggaggaagaaggtggaggcgatgagcgcaccgagcaggacgcaca 761
|||||||||| |||||||||||||||| || |||||||||||| ||||| |||||| | |
Sbjct: 113 agaggtaggggcggaggaggaagaaggaggtggcgatgagcgcgccgaggaggacgaaga 54
Query: 762 gcaggcgctgctcgcggaggacgtagc 788
| ||||||||||||||||||| |||||
Sbjct: 53 ggaggcgctgctcgcggaggaggtagc 27
>gb|BU979918.1|BU979918 HA17M18r HA Hordeum vulgare subsp. vulgare cDNA clone HA17M18
5-PRIME, mRNA sequence
Length = 585
Score = 551 bits (278), Expect = e-155
Identities = 455/514 (88%)
Strand = Plus / Minus
Query: 1 accataaactgtcattggttgtcttcgtagtgcctgtgcaacaaaattgctgaccacgcg 60
|||||| ||||||||||| ||| | || ||||||||||||||||||||||| ||||| ||
Sbjct: 524 accatatactgtcattggatgtttgcgcagtgcctgtgcaacaaaattgctaaccacacg 465
Query: 61 gccatcatcgagacacatacgaggaccatatgtattgaaaatgcgggcaatacgcacctc 120
|||||||| || ||||||||||| |||||||||||||| || || ||||| || ||| |
Sbjct: 464 accatcatccaggcacatacgagggccatatgtattgaagatacgagcaattcgtaccgc 405
Query: 121 aacaccagcaccacgatgatagtccatagttgaagtctcggctgttctcttcccctcatc 180
||||||| |||||||||| ||||||||||| | ||||| |||||||| || ||||||||
Sbjct: 404 aacaccaccaccacgatggtagtccatagtcaaggtctctgctgttcttttgccctcatc 345
Query: 181 ataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgtggatg 240
||| || || |||||||| ||||||||||| |||||||| || | ||||||||| |||||
Sbjct: 344 atagcaacttctaacacctataggattaacatgcccccaataagtctccttctgcggatg 285
Query: 241 ctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcg 300
||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct: 284 ctcaagtgggtcaccataaacttcacttgtgctggtcaacaagaaccttgcaccaattcg 225
Query: 301 ctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtcttgattgg 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 224 ctttgccagacccaacatattcaaggttcccatgacatttgtcttgatcgtcttgatggg 165
Query: 361 gttatacttgtaatgaacgggcgacgcggggcatgcgaggtggtagatccggtcgacata 420
||| || ||||| || |||||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 164 gttgtatttgtagtgcacgggcgatgcggggcacgcgaggtggtagatccggtcgacctc 105
Query: 421 aaagaggattggttcgactacatcgtggcggagcagctcgaaccgggggttccggaggtg 480
| ||||| || ||||| || ||||| |||||||||||||||| ||||||||| |||||
Sbjct: 104 gagaaggatgggctcgacgacgtcgtgtcggagcagctcgaacctggggttccgcaggtg 45
Query: 481 gtgcgcgacgttctccttcctgccggtgaagaag 514
||||||||||||||||||||| ||||||||||||
Sbjct: 44 gtgcgcgacgttctccttcctcccggtgaagaag 11
>gb|AV915820.1|AV915820 AV915820 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16c09 5', mRNA sequence
Length = 490
Score = 505 bits (255), Expect = e-142
Identities = 423/478 (88%), Gaps = 1/478 (0%)
Strand = Plus / Minus
Query: 41 acaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatgtattgaaa 100
||||||||||| ||||| || |||||||| || ||||||||||| ||||||||||||||
Sbjct: 490 acaaaattgctaaccacacgaccatcatccaggcacatacgagggccatatgtattgaag 431
Query: 101 atgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagttgaagtctcg 160
|| || ||||| || ||| |||||||| |||||||||| ||||||||||| | |||||
Sbjct: 430 atacgagcaattcgtaccgcaacaccaccaccacgatggtagtccatagtcaaggtctct 371
Query: 161 gctgttctcttcccctcatcataacagctcctaacaccaataggattaacgtgcccccag 220
|||||||| || ||||||||||| || || |||||||| ||||||||||| ||||||||
Sbjct: 370 gctgttcttttgccctcatcatagcaacttctaacacctataggattaacatgcccccaa 311
Query: 221 tatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaac 280
|| | ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 310 taagtctccttctgcggatgctcaagtgggtcaccataaacttcacttgtgctggtcaac 251
Query: 281 aaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacattt 340
|| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 250 aagaaccttgcaccaattcgctttgccagacccaacatattcaaggttcccatgacattt 191
Query: 341 gtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgagg 400
||||||||||||||||| ||||| || ||||| || |||||||| |||||||| ||||||
Sbjct: 190 gtcttgatcgtcttgatggggttgtatttgtagtgcacgggcgatgcggggcacgcgagg 131
Query: 401 tggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagcagctcg 460
||||||||||||||||| | | ||||| || ||||| || ||||| ||||||||||||
Sbjct: 130 tggtagatccggtcgacctcgagaaggatgggctcgacgacgtcgtgtcggagcagctcg 71
Query: 461 aaccgggggttccggaggtggtgcgcgacgttctccttcctg-ccggtgaagaagttg 517
|||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 70 aacctggggttccgcaggtggtgcgcgacgttctccttcctncccggtgaagaagttg 13
>gb|BI958574.1|BI958574 HVSMEn0015L12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015L12f, mRNA sequence
Length = 624
Score = 496 bits (250), Expect = e-139
Identities = 389/434 (89%), Gaps = 1/434 (0%)
Strand = Plus / Minus
Query: 200 ataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatcaccataa 259
||||||||||| |||||| | || | ||||||||| ||| |||||||||| |||||||||
Sbjct: 621 ataggattaacatgccccaa-taagtctccttctgcggaggctcaagtgggtcaccataa 563
Query: 260 acttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacccaacata 319
|||||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct: 562 acttcacttgtgctggtcaacaagaactttgcaccaattcgctttgccagacccaacata 503
Query: 320 ttcaaagttcccatgacatttgtcttgatcgtcttgattgggttatacttgtaatgaacg 379
||||| |||||||||||||||||||||||||||||||| ||||| || ||||| || |||
Sbjct: 502 ttcaaggttcccatgacatttgtcttgatcgtcttgatggggttgtatttgtagtgcacg 443
Query: 380 ggcgacgcggggcatgcgaggtggtagatccggtcgacataaaagaggattggttcgact 439
||||| |||||||| ||||||||||||||||||||||| | | ||||| || |||||
Sbjct: 442 ggcgatgcggggcacgcgaggtggtagatccggtcgacctcgagaaggatgggctcgacg 383
Query: 440 acatcgtggcggagcagctcgaaccgggggttccggaggtggtgcgcgacgttctccttc 499
|| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 382 acgtcgtgtcggagcagctcgaacctggggttccgcaggtggtgcgcgacgttctccttc 323
Query: 500 ctgccggtgaagaagttgtcgaccacgatcacgctgtccccctgctctaggagccggtcg 559
|| ||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||
Sbjct: 322 ctcccggtgaagaagttgtccaccacgatcacgctgtccccctgctccagcagcctgtcg 263
Query: 560 acgaggtggctgccgacgaaccctgccccgcctgtgacgacgacgcggcgctgcggcggg 619
|||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct: 262 acgaggtggctgcccacgaagcccgccccgccggtgacgacgacgcggcggggcggcggg 203
Query: 620 cggaagccggcggg 633
||||| || |||||
Sbjct: 202 cggaaacccgcggg 189
Score = 101 bits (51), Expect = 4e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 702 agaggtagggccggaggaggaagaaggtggaggcgatgagcgcaccgagcaggacgcaca 761
|||||||||| |||||||||||||||| || |||||||||||| ||||| |||||| | |
Sbjct: 108 agaggtaggggcggaggaggaagaaggaggtggcgatgagcgcgccgaggaggacgaaga 49
Query: 762 gcaggcgctgctcgcggaggacgtagc 788
| ||||||||||||||||||| |||||
Sbjct: 48 ggaggcgctgctcgcggaggaggtagc 22
>gb|BI957438.1|BI957438 HVSMEn0009I23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009I23f, mRNA sequence
Length = 655
Score = 361 bits (182), Expect = 3e-098
Identities = 301/338 (89%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 298 tcgctttgcc-agacccaacatattcaaag-ttcccatgacatttgtcttgatcgtcttg 355
|||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 635 tcgctttgcccagacccaacatattcaaaggttcccaggacatttgtcttgatcgtcttg 576
Query: 356 attgggttatacttgtaatgaacgggcgacgcggggcatgcgaggtggtagatccggtcg 415
|| ||||| || ||||| || |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 575 atggggttgtatttgtagtgcacgggcgatgcggggcacgcgagagggtagatccggtcg 516
Query: 416 acataaaagaggattggttcgactacatcgtggcggagcagctcgaaccgggggttccgg 475
|| | | ||||| || ||||| || ||||| |||||||||||||||| |||||||||
Sbjct: 515 acctcgagaaggatgggctcgacgacgtcgtgtcggagcagctcgaacctggggttccgc 456
Query: 476 aggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctg 535
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 455 aggtggtgcgcgacgttctccttcctcccggtgaagaagttgtccaccacgatcacgctg 396
Query: 536 tccccctgctctaggagccggtcgacgaggtggctgccgacgaaccctgccccgcctgtg 595
||||||||||| || |||| |||||||||||||||||| ||||| || |||||||| |||
Sbjct: 395 tccccctgctccagcagcctgtcgacgaggtggctgcccacgaagcccgccccgccggtg 336
Query: 596 acgacgacgcggcgctgcggcgggcggaagccggcggg 633
|||||||||||||| ||||||||||||| || |||||
Sbjct: 335 acgacgacgcggcggggcggcgggcggaaacccgcggg 298
Score = 101 bits (51), Expect = 4e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 702 agaggtagggccggaggaggaagaaggtggaggcgatgagcgcaccgagcaggacgcaca 761
|||||||||| |||||||||||||||| || |||||||||||| ||||| |||||| | |
Sbjct: 217 agaggtaggggcggaggaggaagaaggaggtggcgatgagcgcgccgaggaggacgaaga 158
Query: 762 gcaggcgctgctcgcggaggacgtagc 788
| ||||||||||||||||||| |||||
Sbjct: 157 ggaggcgctgctcgcggaggaggtagc 131
Score = 83.8 bits (42), Expect = 1e-014
Identities = 59/64 (92%), Gaps = 3/64 (4%)
Strand = Plus / Minus
Query: 843 gcgtgcgccggcgatggcgcgtgggtaggggaagacttgtggagctgcttcatggcggga 902
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 77 gcgtgcgccggcgacggcgcgtgggtggggga---cttgtggagctgcttcatggcggga 21
Query: 903 gagc 906
||||
Sbjct: 20 gagc 17
>gb|CB882307.1|CB882307 HL01H23w HL Hordeum vulgare subsp. vulgare cDNA clone HL01H23
3-PRIME, mRNA sequence
Length = 569
Score = 297 bits (150), Expect = 3e-079
Identities = 237/266 (89%)
Strand = Plus / Minus
Query: 368 ttgtaatgaacgggcgacgcggggcatgcgaggtggtagatccggtcgacataaaagagg 427
||||| || |||||||| |||||||| ||||||||||||||||||||||| | | |||
Sbjct: 567 ttgtagtgcacgggcgatgcggggcacgcgaggtggtagatccggtcgacctcgagaagg 508
Query: 428 attggttcgactacatcgtggcggagcagctcgaaccgggggttccggaggtggtgcgcg 487
|| || ||||| || ||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 507 atgggctcgacgacgtcgtgtcggagcagctcgaacctggggttccgcaggtggtgcgcg 448
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtccccctgctct 547
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 447 acgttctccttcctcccggtgaagaagttgtccaccacgatcacgctgtccccctgctcc 388
Query: 548 aggagccggtcgacgaggtggctgccgacgaaccctgccccgcctgtgacgacgacgcgg 607
|| |||| |||||||||||||||||| ||||| || |||||||| |||||||||||||||
Sbjct: 387 agcagcctgtcgacgaggtggctgcccacgaagcccgccccgccggtgacgacgacgcgg 328
Query: 608 cgctgcggcgggcggaagccggcggg 633
|| ||||||||||||| || |||||
Sbjct: 327 cggggcggcgggcggaaacccgcggg 302
Score = 101 bits (51), Expect = 4e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 702 agaggtagggccggaggaggaagaaggtggaggcgatgagcgcaccgagcaggacgcaca 761
|||||||||| |||||||||||||||| || |||||||||||| ||||| |||||| | |
Sbjct: 221 agaggtaggggcggaggaggaagaaggaggtggcgatgagcgcgccgaggaggacgaaga 162
Query: 762 gcaggcgctgctcgcggaggacgtagc 788
| ||||||||||||||||||| |||||
Sbjct: 161 ggaggcgctgctcgcggaggaggtagc 135
Score = 87.7 bits (44), Expect = 6e-016
Identities = 61/66 (92%), Gaps = 3/66 (4%)
Strand = Plus / Minus
Query: 843 gcgtgcgccggcgatggcgcgtgggtaggggaagacttgtggagctgcttcatggcggga 902
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 81 gcgtgcgccggcgacggcgcgtgggtggggga---cttgtggagctgcttcatggcggga 25
Query: 903 gagcgg 908
||||||
Sbjct: 24 gagcgg 19
>gb|CA017471.1|CA017471 HV05E22r HV Hordeum vulgare subsp. vulgare cDNA clone HV05E22
5-PRIME, mRNA sequence
Length = 500
Score = 135 bits (68), Expect = 3e-030
Identities = 221/272 (81%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| ||||||| ||||| |||||||| || ||||| || ||||||||
Sbjct: 351 acattggtcttgattgtcttgacggggttgtacttgtagtggacgggggatgcggggcag 292
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||| ||||||||| ||||||| | | |||||| || ||||| || |||||||||| |
Sbjct: 291 gcgagatggtagatctggtcgacctcgaggaggatgggctcgacgacgtcgtggcggatc 232
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| ||||| | || ||||||| ||||||||||| | ||||||||||| |
Sbjct: 231 atctcgaagtttgggttgccgaagtggtgcatcacgttctccttgcggccggtgaagagg 172
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
||||| ||||||||||||||||| || || | | || ||||| ||||||||||||||
Sbjct: 171 ttgtccaccacgatcacgctgtcgccgcgcgccaccaggcggtccacgaggtggctgccc 112
Query: 575 acgaaccctgccccgcctgtgacgacgacgcg 606
||||| || || ||||| ||||||| ||||||
Sbjct: 111 acgaagccggcgccgccggtgacgaggacgcg 80
>gb|CB879349.1|CB879349 HP11N15T HP Hordeum vulgare subsp. vulgare cDNA clone HP11N15
5-PRIME, mRNA sequence
Length = 604
Score = 135 bits (68), Expect = 3e-030
Identities = 221/272 (81%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| ||||||| ||||| |||||||| || ||||| || ||||||||
Sbjct: 431 acattggtcttgattgtcttgacggggttgtacttgtagtggacgggggatgcggggcag 372
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||| ||||||||| ||||||| | | |||||| || ||||| || |||||||||| |
Sbjct: 371 gcgagatggtagatctggtcgacctcgaggaggatgggctcgacgacgtcgtggcggatc 312
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| ||||| | || ||||||| ||||||||||| | ||||||||||| |
Sbjct: 311 atctcgaagtttgggttgccgaagtggtgcatcacgttctccttgcggccggtgaagagg 252
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
||||| ||||||||||||||||| || || | | || ||||| ||||||||||||||
Sbjct: 251 ttgtccaccacgatcacgctgtcgccgcgcgccaccaggcggtccacgaggtggctgccc 192
Query: 575 acgaaccctgccccgcctgtgacgacgacgcg 606
||||| || || ||||| ||||||| ||||||
Sbjct: 191 acgaagccggcgccgccggtgacgaggacgcg 160
>gb|AL505147.1|AL505147 AL505147 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I19V 5', mRNA sequence
Length = 647
Score = 129 bits (65), Expect = 2e-028
Identities = 220/272 (80%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| ||||||| ||||| |||||||| || ||||| || ||||||||
Sbjct: 362 acattggtcttgattgtcttgacggggttgtacttgtagtggacgggggatgcggggcag 303
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||| ||||||||| ||||||| | | |||||| || | ||| || |||||||||| |
Sbjct: 302 gcgagatggtagatctggtcgacctcgaggaggatgggctngacgacgtcgtggcggatc 243
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| ||||| | || ||||||| ||||||||||| | ||||||||||| |
Sbjct: 242 atctcgaagtttgggttgccgaagtggtgcatcacgttctccttgcggccggtgaagagg 183
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
||||| ||||||||||||||||| || || | | || ||||| ||||||||||||||
Sbjct: 182 ttgtccaccacgatcacgctgtcgccgcgcgccaccaggcggtccacgaggtggctgccc 123
Query: 575 acgaaccctgccccgcctgtgacgacgacgcg 606
||||| || || ||||| ||||||| ||||||
Sbjct: 122 acgaagccggcgccgccggtgacgaggacgcg 91
>gb|BU982278.1|BU982278 HA26A18r HA Hordeum vulgare subsp. vulgare cDNA clone HA26A18
5-PRIME, mRNA sequence
Length = 565
Score = 129 bits (65), Expect = 2e-028
Identities = 129/149 (86%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 1 accataaactgtcattggttgtcttcgtagtgcctgtgcaacaaaattgctgaccacgcg 60
|||||| ||||||||||| ||| | || ||||||||||||||||||||||| ||||| ||
Sbjct: 158 accatatactgtcattggatgtttgcgcagtgcctgtgcaacaaaattgctaaccacacg 99
Query: 61 gccatcatcgagacacatacgaggaccatatgtattgaaaatgcgggcaatacgcacctc 120
|||||||| || ||||||||||| ||||||||||| || || || ||||| || ||| |
Sbjct: 98 accatcatccaggcacatacgagggccatatgtatt-aagatacgagcaattcgtaccgc 40
Query: 121 aacaccagcaccacgatgatagtccatag 149
||||||| |||||||||| ||||||||||
Sbjct: 39 aacaccaccaccacgatggtagtccatag 11
>gb|BI954503.1|BI954503 HVSMEm0018E24f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0018E24f, mRNA sequence
Length = 678
Score = 127 bits (64), Expect = 7e-028
Identities = 220/272 (80%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| ||||||| ||||| |||||||| || ||||| || ||||||||
Sbjct: 421 acattggtcttgattgtcttgacggggttgtacttgtagtggacgggggatgcggggcag 362
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||| ||||||||| ||||||| | | |||||| || ||||| || |||||||||| |
Sbjct: 361 gcgagatggtagatctggtcgacctcgaggaggatgggctcgacgacgtcgtggcggatc 302
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| ||||| | || ||||||| ||||||||||| | ||||||||||| |
Sbjct: 301 atctcgaagtttgggttgccgaagtggtgcatcacgttctccttgcggccggtgaagagg 242
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
||||| ||||||||||||||||| || || | | || ||||| ||||||||||||||
Sbjct: 241 ttgtccaccacgatcacgctgtcgccgcgcgccaccaggcggtccacgaggtggctgccc 182
Query: 575 acgaaccctgccccgcctgtgacgacgacgcg 606
| ||| || || ||||| ||||||| ||||||
Sbjct: 181 aagaagccggcgccgccggtgacgaggacgcg 150
>gb|BQ470611.1|BQ470611 HX03H22r HX Hordeum vulgare subsp. vulgare cDNA clone HX03H22
5-PRIME, mRNA sequence
Length = 475
Score = 127 bits (64), Expect = 7e-028
Identities = 220/272 (80%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| ||||||| ||||| |||||||| || ||||| || ||||||||
Sbjct: 415 acattggtcttgattgtcttgacggggttgtacttgtagtggacgggggatgcggggcag 356
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||| ||||||||| ||||||| | | |||||| || ||||| || |||||||||| |
Sbjct: 355 gcgagatggtagatctggtcgacctcgaggaggatgggctcgacgacgtcgtggcggatc 296
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| ||||| | || ||||||| ||||||||||| | ||||||||||| |
Sbjct: 295 atctcgaagtttgggttgccgaagtggtgcatcacgttctccttgcggccggtgaagagg 236
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
||||| ||||||||||| ||||| || || | | || ||||| ||||||||||||||
Sbjct: 235 ttgtccaccacgatcacactgtcgccgcgcgccaccaggcggtccacgaggtggctgccc 176
Query: 575 acgaaccctgccccgcctgtgacgacgacgcg 606
||||| || || ||||| ||||||| ||||||
Sbjct: 175 acgaagccggcgccgccggtgacgaggacgcg 144
>gb|CA004075.1|CA004075 HS16H11r HS Hordeum vulgare subsp. vulgare cDNA clone HS16H11
5-PRIME, mRNA sequence
Length = 206
Score = 125 bits (63), Expect = 3e-027
Identities = 96/107 (89%)
Strand = Plus / Minus
Query: 527 atcacgctgtccccctgctctaggagccggtcgacgaggtggctgccgacgaaccctgcc 586
|||||||||||||||||||| || |||| |||||||||||||||||| ||||| || |||
Sbjct: 206 atcacgctgtccccctgctccagcagcctgtcgacgaggtggctgcccacgaagcccgcc 147
Query: 587 ccgcctgtgacgacgacgcggcgctgcggcgggcggaagccggcggg 633
||||| ||||||||||||||||| ||||||||||||| || |||||
Sbjct: 146 ccgccggtgacgacgacgcggcggggcggcgggcggaaacccgcggg 100
>gb|BJ547041.1|BJ547041 BJ547041 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal37k14 5', mRNA sequence
Length = 565
Score = 121 bits (61), Expect = 4e-026
Identities = 199/245 (81%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| ||||||| ||||| |||||||| || ||||| || ||||||||
Sbjct: 261 acattggtcttgattgtcttgacggggttgtacttgtagtggacgggggatgcggggcag 202
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||| ||||||||| ||||||| | | |||||| || ||||| || |||||||||| |
Sbjct: 201 gcgagatggtagatctggtcgacctcgaggaggatgggctcgacgacgtcgtggcggatc 142
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| ||||| | || ||||||| ||||||||||| | ||||||||||| |
Sbjct: 141 atctcgaagtttgggttgccgaagtggtgcatcacgttctccttgcggccggtgaagagg 82
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
||||| ||||||||||||||||| || || | | || ||||| ||||||||||||||
Sbjct: 81 ttgtccaccacgatcacgctgtcgccgcgcgccaccaggcggtccacgaggtggctgccc 22
Query: 575 acgaa 579
|||||
Sbjct: 21 acgaa 17
>gb|BF631172.1|BF631172 HVSMEb0015C21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015C21f, mRNA sequence
Length = 764
Score = 117 bits (59), Expect = 7e-025
Identities = 167/203 (82%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| ||||||| ||||| |||||||| || ||||| || ||||||||
Sbjct: 246 acattggtcttgattgtcttgacggggttgtacttgtagtggacgggggatgcggggcag 187
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||| ||||||||| ||||||| | | |||||| || ||||| || |||||||||| |
Sbjct: 186 gcgagatggtagatctggtcgacctcgaggaggatgggctcgacgacgtcgtggcggatc 127
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| ||||| | || ||||||| ||||||||||| | ||||||||||| |
Sbjct: 126 atctcgaagtttgggttgccgaagtggtgcatcacgttctccttgcggccggtgaagagg 67
Query: 515 ttgtcgaccacgatcacgctgtc 537
||||| |||||||||||||||||
Sbjct: 66 ttgtccaccacgatcacgctgtc 44
>gb|BF261472.2|BF261472 HV_CEa0001G01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0001G01f, mRNA sequence
Length = 843
Score = 117 bits (59), Expect = 7e-025
Identities = 203/251 (80%)
Strand = Plus / Minus
Query: 341 gtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgagg 400
|||||||| ||||||| ||||| ||||||| || ||||| || || ||||| ||||||
Sbjct: 669 gtcttgatggtcttgacggggttgaacttgtagtgcacgggggaggccgggcaggcgagg 610
Query: 401 tggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagcagctcg 460
||||||||| |||| || | | ||||| || ||||| || ||||| |||| || ||||
Sbjct: 609 tggtagatctggtccacctccagcaggatcggctcgacgacgtcgtgccggatcatctcg 550
Query: 461 aaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcg 520
|| |||||||| | ||||||||| ||||||||||| | || ||||||||||||||
Sbjct: 549 aagttggggttcccggcgtggtgcgccacgttctccttgcgccccgtgaagaagttgtcc 490
Query: 521 accacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccgacgaac 580
|||||||||||||| || || || | || |||||||| || ||||||||||| ||||||
Sbjct: 489 accacgatcacgctatcgccgcgcgccagcagccggtccaccaggtggctgcccacgaac 430
Query: 581 cctgccccgcc 591
|| ||||||||
Sbjct: 429 ccggccccgcc 419
>gb|AV915891.1|AV915891 AV915891 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16h19 5', mRNA sequence
Length = 661
Score = 117 bits (59), Expect = 7e-025
Identities = 167/203 (82%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| ||||||| ||||| |||||||| || ||||| || ||||||||
Sbjct: 238 acattggtcttgattgtcttgacggggttgtacttgtagtggacgggggatgcggggcag 179
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||| ||||||||| ||||||| | | |||||| || ||||| || |||||||||| |
Sbjct: 178 gcgagatggtagatctggtcgacctcgaggaggatgggctcgacgacgtcgtggcggatc 119
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| ||||| | || ||||||| ||||||||||| | ||||||||||| |
Sbjct: 118 atctcgaagtttgggttgccgaagtggtgcatcacgttctccttgcggccggtgaagagg 59
Query: 515 ttgtcgaccacgatcacgctgtc 537
||||| |||||||||||||||||
Sbjct: 58 ttgtccaccacgatcacgctgtc 36
>gb|BU972129.1|BU972129 HB20L03r BC Hordeum vulgare subsp. vulgare cDNA clone HB20L03
5-PRIME, mRNA sequence
Length = 412
Score = 117 bits (59), Expect = 7e-025
Identities = 167/203 (82%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| ||||||| ||||| |||||||| || ||||| || ||||||||
Sbjct: 229 acattggtcttgattgtcttgacggggttgtacttgtagtggacgggggatgcggggcag 170
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||| ||||||||| ||||||| | | |||||| || ||||| || |||||||||| |
Sbjct: 169 gcgagatggtagatctggtcgacctcgaggaggatgggctcgacgacgtcgtggcggatc 110
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| ||||| | || ||||||| ||||||||||| | ||||||||||| |
Sbjct: 109 atctcgaagtttgggttgccgaagtggtgcatcacgttctccttgcggccggtgaagagg 50
Query: 515 ttgtcgaccacgatcacgctgtc 537
||||| |||||||||||||||||
Sbjct: 49 ttgtccaccacgatcacgctgtc 27
>gb|AV914112.1|AV914112 AV914112 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m11 5', mRNA sequence
Length = 623
Score = 83.8 bits (42), Expect = 1e-014
Identities = 149/185 (80%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| ||||||| ||||| |||||||| || ||||| || ||||||||
Sbjct: 185 acattggtcttgattgtcttgacggggttgtacttgtagtggacgggggatgcggggcag 126
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||| ||||||||| ||||||| | | |||||| || ||||| || |||||||||| |
Sbjct: 125 gcgagatggtagatctggtcgacctcgaggaggatgggctcgacgacgtcgtggcggatc 66
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| ||||| | || ||||||| ||||||||||| | |||||| |||| |
Sbjct: 65 atctcgaagtttgggttgccgaagtggtgcatcacgttctccttgcggccggtnaagagg 6
Query: 515 ttgtc 519
|||||
Sbjct: 5 ttgtc 1
>gb|AL503252.1|AL503252 AL503252 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01F04T 5', mRNA sequence
Length = 700
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 586 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 527
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 526 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 467
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 466 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 407
Query: 353 ttga 356
||||
Sbjct: 406 ttga 403
>gb|AL503569.1|AL503569 AL503569 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02K09T 5', mRNA sequence
Length = 700
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 581 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 522
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 521 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 462
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 461 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 402
Query: 353 ttga 356
||||
Sbjct: 401 ttga 398
>gb|AL506538.1|AL506538 AL506538 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03H14T 5',
mRNA sequence
Length = 700
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 611 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 552
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 551 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 492
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 491 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 432
Query: 353 ttga 356
||||
Sbjct: 431 ttga 428
>gb|AL506572.1|AL506572 AL506572 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03J03T 5',
mRNA sequence
Length = 700
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 614 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 555
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 554 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 495
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 494 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 435
Query: 353 ttga 356
||||
Sbjct: 434 ttga 431
>gb|AL506691.1|AL506691 AL506691 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03P08T 5',
mRNA sequence
Length = 700
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 600 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 541
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 540 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 481
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 480 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 421
Query: 353 ttga 356
||||
Sbjct: 420 ttga 417
>gb|AL507716.1|AL507716 AL507716 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06K11V 5',
mRNA sequence
Length = 700
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 613 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 554
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 553 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 494
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 493 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 434
Query: 353 ttga 356
||||
Sbjct: 433 ttga 430
>gb|BF255870.2|BF255870 HVSMEf0008A22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0008A22f, mRNA sequence
Length = 871
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 625 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 566
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 565 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 506
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 505 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 446
Query: 353 ttga 356
||||
Sbjct: 445 ttga 442
>gb|BF260905.2|BF260905 HVSMEf0023E01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023E01f, mRNA sequence
Length = 758
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 697 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 638
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 637 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 578
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 577 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 518
Query: 353 ttga 356
||||
Sbjct: 517 ttga 514
>gb|BE454127.2|BE454127 HVSMEh0080M10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080M10f, mRNA sequence
Length = 716
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 619 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 560
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 559 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 500
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 499 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 440
Query: 353 ttga 356
||||
Sbjct: 439 ttga 436
>gb|BI959050.1|BI959050 HVSMEn0017O17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017O17f, mRNA sequence
Length = 648
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 606 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 547
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 546 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 487
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 486 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 427
Query: 353 ttga 356
||||
Sbjct: 426 ttga 423
>gb|BI960239.1|BI960239 HVSMEn0023O02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023O02f, mRNA sequence
Length = 646
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 624 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 565
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 564 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 505
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 504 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 445
Query: 353 ttga 356
||||
Sbjct: 444 ttga 441
>gb|BI960443.1|BI960443 HVSMEn0024J22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024J22f, mRNA sequence
Length = 641
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 609 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 550
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 549 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 490
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 489 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 430
Query: 353 ttga 356
||||
Sbjct: 429 ttga 426
>gb|AW983194.3|AW983194 HVSMEg0008K01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0008K01f, mRNA sequence
Length = 811
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 623 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 564
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 563 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 504
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 503 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 444
Query: 353 ttga 356
||||
Sbjct: 443 ttga 440
>gb|AV912858.1|AV912858 AV912858 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j24 5', mRNA sequence
Length = 599
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 487 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 428
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 427 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 368
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 367 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 308
Query: 353 ttga 356
||||
Sbjct: 307 ttga 304
>gb|AV913569.1|AV913569 AV913569 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i15 5', mRNA sequence
Length = 582
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 413 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 354
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 353 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 294
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 293 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 234
Query: 353 ttga 356
||||
Sbjct: 233 ttga 230
>gb|AV913652.1|AV913652 AV913652 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22n04 5', mRNA sequence
Length = 589
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 481 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 422
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 421 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 362
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 361 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 302
Query: 353 ttga 356
||||
Sbjct: 301 ttga 298
>gb|AV913736.1|AV913736 AV913736 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23b18 5', mRNA sequence
Length = 660
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 289 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 230
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 229 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 170
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 169 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 110
Query: 353 ttga 356
||||
Sbjct: 109 ttga 106
>gb|AV915529.1|AV915529 AV915529 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14p07 5', mRNA sequence
Length = 645
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 390 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 331
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 330 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 271
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 270 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 211
Query: 353 ttga 356
||||
Sbjct: 210 ttga 207
>gb|AV915934.1|AV915934 AV915934 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16l08 5', mRNA sequence
Length = 661
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 612 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 553
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 552 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 493
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 492 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 433
Query: 353 ttga 356
||||
Sbjct: 432 ttga 429
>gb|AV916097.1|AV916097 AV916097 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1h02 5', mRNA sequence
Length = 532
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 364 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 305
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 304 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 245
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 244 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 185
Query: 353 ttga 356
||||
Sbjct: 184 ttga 181
>gb|AV916858.1|AV916858 AV916858 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o01 5', mRNA sequence
Length = 404
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 291 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 232
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 231 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 172
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 171 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 112
Query: 353 ttga 356
||||
Sbjct: 111 ttga 108
>gb|AV917132.1|AV917132 AV917132 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o08 5', mRNA sequence
Length = 447
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 391 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 332
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 331 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 272
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 271 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 212
Query: 353 ttga 356
||||
Sbjct: 211 ttga 208
>gb|AV917183.1|AV917183 AV917183 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8g03 5', mRNA sequence
Length = 478
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 307 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 248
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 247 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 188
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 187 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 128
Query: 353 ttga 356
||||
Sbjct: 127 ttga 124
>gb|BM816179.1|BM816179 HC02E01_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC02E01_T3.ab1 similar to dTDP-glucose 4,6-dehydratase,,
mRNA sequence
Length = 789
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 461 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 402
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 401 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 342
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 341 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 282
Query: 353 ttga 356
||||
Sbjct: 281 ttga 278
>gb|BJ450393.1|BJ450393 BJ450393 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29f24 5', mRNA sequence
Length = 637
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 510 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 451
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 450 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 391
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 390 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 331
Query: 353 ttga 356
||||
Sbjct: 330 ttga 327
>gb|BJ462500.1|BJ462500 BJ462500 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28m06 5', mRNA sequence
Length = 566
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 412 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 353
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 352 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 293
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 292 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 233
Query: 353 ttga 356
||||
Sbjct: 232 ttga 229
>gb|BJ463235.1|BJ463235 BJ463235 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26g08 5', mRNA sequence
Length = 559
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 391 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 332
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 331 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 272
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 271 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 212
Query: 353 ttga 356
||||
Sbjct: 211 ttga 208
>gb|BJ463694.1|BJ463694 BJ463694 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30b17 5', mRNA sequence
Length = 595
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 430 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 371
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 370 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 311
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 310 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 251
Query: 353 ttga 356
||||
Sbjct: 250 ttga 247
>gb|BJ464032.1|BJ464032 BJ464032 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31i13 5', mRNA sequence
Length = 486
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 364 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 305
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 304 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 245
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 244 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 185
Query: 353 ttga 356
||||
Sbjct: 184 ttga 181
>gb|BJ464187.1|BJ464187 BJ464187 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33d22 5', mRNA sequence
Length = 511
Score = 79.8 bits (40), Expect = 2e-013
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||| || |||||||| || ||||| || ||||| | |||||||| | |||| ||
Sbjct: 391 ccctcatcgtagcagctcctgactccaattgggttaacattgccccagtaggcctccgtc 332
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct: 331 tgaggatgctcaagaggatcaccataaacttcagaggtcgaagtcaacaatattctagct 272
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || || | ||| ||||| || || |||||||| |||||||| |||
Sbjct: 271 ccaactctctttgcaagtccaagcatgttcaaggtcccaatgacattcgtcttgatggtc 212
Query: 353 ttga 356
||||
Sbjct: 211 ttga 208
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,361
Number of Sequences: 312970
Number of extensions: 143361
Number of successful extensions: 39351
Number of sequences better than 0.5: 147
Number of HSP's better than 0.5 without gapping: 146
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 39062
Number of HSP's gapped (non-prelim): 273
length of query: 950
length of database: 175,134,539
effective HSP length: 19
effective length of query: 931
effective length of database: 169,188,109
effective search space: 157514129479
effective search space used: 157514129479
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)