BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848982.2.1
(697 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 135 2e-030
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 135 2e-030
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 135 2e-030
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 127 5e-028
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 127 5e-028
gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 ... 109 1e-022
gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DA... 109 1e-022
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 103 8e-021
gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 ... 90 1e-016
gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DA... 86 2e-015
gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 ... 70 1e-010
gb|BG367966.2|BG367966 HVSMEi0015B12f Hordeum vulgare 20 DA... 62 3e-008
gb|BU983370.1|BU983370 HA29H20r HA Hordeum vulgare subsp. v... 62 3e-008
gb|BM442260.2|BM442260 EBan01_SQ002_K24_R anther, yellow st... 60 1e-007
gb|BI959546.1|BI959546 HVSMEn0020C08f Hordeum vulgare rachi... 48 4e-004
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 44 0.006
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 44 0.006
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 44 0.006
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 44 0.006
gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subs... 44 0.006
gb|AJ463237.1|AJ463237 AJ463237 S00002 Hordeum vulgare subs... 44 0.006
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 44 0.006
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 44 0.006
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 44 0.006
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 44 0.006
gb|BG365226.2|BG365226 HVSMEi0001O04f Hordeum vulgare 20 DA... 42 0.024
gb|BE060291.3|BE060291 HVSMEg0011O02f Hordeum vulgare pre-a... 40 0.095
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 40 0.095
gb|AV918336.1|AV918336 AV918336 K. Sato unpublished cDNA li... 40 0.095
gb|AV918397.1|AV918397 AV918397 K. Sato unpublished cDNA li... 40 0.095
gb|AJ436055.1|AJ436055 AJ436055 S00002 Hordeum vulgare subs... 40 0.095
gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subs... 40 0.095
gb|AJ462522.1|AJ462522 AJ462522 S00002 Hordeum vulgare subs... 40 0.095
gb|AJ462523.1|AJ462523 AJ462523 S00002 Hordeum vulgare subs... 40 0.095
gb|AJ462525.1|AJ462525 AJ462525 S00002 Hordeum vulgare subs... 40 0.095
gb|AJ462588.1|AJ462588 AJ462588 S00002 Hordeum vulgare subs... 40 0.095
gb|BQ663461.1|BQ663461 HU02M06u HU Hordeum vulgare subsp. v... 40 0.095
gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no... 40 0.095
gb|CA004936.1|CA004936 HU12M15u HU Hordeum vulgare subsp. v... 40 0.095
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 40 0.095
gb|CA017320.1|CA017320 HV12M19u HV Hordeum vulgare subsp. v... 40 0.095
gb|CB876346.1|CB876346 HX11A03w HX Hordeum vulgare subsp. v... 40 0.095
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 40 0.095
gb|BI953744.1|BI953744 HVSMEm0014C01f Hordeum vulgare green... 38 0.37
gb|BF267210.2|BF267210 HV_CEa0017E08f Hordeum vulgare seedl... 38 0.37
gb|AV912910.1|AV912910 AV912910 K. Sato unpublished cDNA li... 38 0.37
gb|AV916296.1|AV916296 AV916296 K. Sato unpublished cDNA li... 38 0.37
gb|AV917665.1|AV917665 AV917665 K. Sato unpublished cDNA li... 38 0.37
gb|AV934988.1|AV934988 AV934988 K. Sato unpublished cDNA li... 38 0.37
gb|AV936840.1|AV936840 AV936840 K. Sato unpublished cDNA li... 38 0.37
gb|BJ473640.1|BJ473640 BJ473640 K. Sato unpublished cDNA li... 38 0.37
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 38 0.37
gb|BQ763319.1|BQ763319 EBro02_SQ007_N23_R root, 3 week, hyd... 38 0.37
gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. v... 38 0.37
gb|CV054919.1|CV054919 BNEL114g4 Barley EST endosperm libra... 38 0.37
gb|CV058389.1|CV058389 BNEL37e4 Barley EST endosperm librar... 38 0.37
gb|CV058504.1|CV058504 BNEL38g12 Barley EST endosperm libra... 38 0.37
gb|CV059851.1|CV059851 BNEL51f4 Barley EST endosperm librar... 38 0.37
emb|Y13191.1|HVWL8MRNA Hordeum vulgare mRNA for hypothetica... 38 0.37
>gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015L12f, mRNA sequence
Length = 871
Score = 135 bits (68), Expect = 2e-030
Identities = 179/216 (82%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 277 gagcccgtccacttcgacctgagcgggacggcgttcggcggcatggcgaagcccggccag 336
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgggtggcgtgcaac 161
||||||||||| || ||||| || || ||| ||||||||| ||||| ||||||||
Sbjct: 337 gccgaccagcttcgcgcggccggacgtctccaaatccagtacacacgggtcccgtgcaac 396
Query: 162 tggaacggcttggacatcgccttcagggtggacgccggctcaaacgccaactacctggcc 221
||| || || || | ||||||| ||||||||||||||| ||| || ||||||| |||
Sbjct: 397 tggcgggggatgcacgtagccttcaaggtggacgccggctccaacccctactacctcgcc 456
Query: 222 atggccatcgagtacgagtccggggacggggacctg 257
|| ||||||||||||| ||| ||||| ||||||
Sbjct: 457 gtgctcatcgagtacgaggacggcgacggcgacctg 492
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 135 bits (68), Expect = 2e-030
Identities = 179/216 (82%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 49 gagcccgtccacttcgacctgagcgggacggcgttcggcggcatggcgaagcccggccag 108
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgggtggcgtgcaac 161
||||||||||| || ||||| || || ||| ||||||||| ||||| ||||||||
Sbjct: 109 gccgaccagcttcgcgcggccggacgtctccaaatccagtacacacgggtcccgtgcaac 168
Query: 162 tggaacggcttggacatcgccttcagggtggacgccggctcaaacgccaactacctggcc 221
||| || || || | ||||||| ||||||||||||||| ||| || ||||||| |||
Sbjct: 169 tggcgggggatgcacgtagccttcaaggtggacgccggctccaacccctactacctcgcc 228
Query: 222 atggccatcgagtacgagtccggggacggggacctg 257
|| ||||||||||||| ||| ||||| ||||||
Sbjct: 229 gtgctcatcgagtacgaggacggcgacggcgacctg 264
Score = 81.8 bits (41), Expect = 3e-014
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 372 gtccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccgga 431
|||||||||||||| ||||||||| | ||||| || || |||||||||||||||||
Sbjct: 382 gtccgcctcacctccagctccggcaagactctcgtggcaagtaacgtcatccccgccggc 441
Query: 432 tggcagcccggcagaacctaccgctccgtcgtcaact 468
||| |||| ||| | ||||||||||||||||||||||
Sbjct: 442 tggaagcctggcggcacctaccgctccgtcgtcaact 478
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 135 bits (68), Expect = 2e-030
Identities = 179/216 (82%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 63 gagcccgtccacttcgacctgagcgggacggcgttcggcggcatggcgaagcccggccag 122
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgggtggcgtgcaac 161
||||||||||| || ||||| || || ||| ||||||||| ||||| ||||||||
Sbjct: 123 gccgaccagcttcgcgcggccggacgtctccaaatccagtacacacgggtcccgtgcaac 182
Query: 162 tggaacggcttggacatcgccttcagggtggacgccggctcaaacgccaactacctggcc 221
||| || || || | ||||||| ||||||||||||||| ||| || ||||||| |||
Sbjct: 183 tggcgggggatgcacgtagccttcaaggtggacgccggctccaacccctactacctcgcc 242
Query: 222 atggccatcgagtacgagtccggggacggggacctg 257
|| ||||||||||||| ||| ||||| ||||||
Sbjct: 243 gtgctcatcgagtacgaggacggcgacggcgacctg 278
Score = 89.7 bits (45), Expect = 1e-016
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 372 gtccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccgga 431
|||||||||||||| ||||||||| | ||||| || || |||||||||||||||||
Sbjct: 396 gtccgcctcacctccagctccggcaagactctcgtggcaagtaacgtcatccccgccggc 455
Query: 432 tggcagcccggcagaacctaccgctccgtcgtcaact 468
||| |||||||| | ||||||||||||||||||||||
Sbjct: 456 tggaagcccggcggcacctaccgctccgtcgtcaact 492
>gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020B24f, mRNA sequence
Length = 679
Score = 127 bits (64), Expect = 5e-028
Identities = 178/216 (82%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 367 gagcccgtccacttcgacctgagcgggacggcgttcggcggcatggcgaagcccggccag 426
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgggtggcgtgcaac 161
||||||||||| || ||||| || || ||| ||||||||| ||| | ||||||||
Sbjct: 427 gccgaccagcttcgcgcggccggacgtctccaaatccagtacacacggttcccgtgcaac 486
Query: 162 tggaacggcttggacatcgccttcagggtggacgccggctcaaacgccaactacctggcc 221
||| || || || | ||||||| ||||||||||||||| ||| || ||||||| |||
Sbjct: 487 tggcgggggatgcacgtagccttcaaggtggacgccggctccaacccctactacctcgcc 546
Query: 222 atggccatcgagtacgagtccggggacggggacctg 257
|| ||||||||||||| ||| ||||| ||||||
Sbjct: 547 gtgctcatcgagtacgaggacggcgacggcgacctg 582
>gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015M21f, mRNA sequence
Length = 817
Score = 127 bits (64), Expect = 5e-028
Identities = 178/216 (82%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 417 gagcccgtccacttcgacctgagcgggacggcgttcggcggcatggcgaagcccggccag 476
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgggtggcgtgcaac 161
||||||||||| || ||||| || || ||| ||||||||| ||||| ||||||||
Sbjct: 477 gccgaccagcttcgcgcggccggacgtctccaaatccagtacacacgggtcccgtgcaac 536
Query: 162 tggaacggcttggacatcgccttcagggtggacgccggctcaaacgccaactacctggcc 221
||| || || || | ||||||| ||||||||||||||| ||| || ||||||| |||
Sbjct: 537 tggcgggggatgcacgtagccttcaaggtggacgccggctccaacccctactacctcgcc 596
Query: 222 atggccatcgagtacgagtccggggacggggacctg 257
|| ||| ||||||||| ||| ||||| ||||||
Sbjct: 597 gtgctcattgagtacgaggacggcgacggcgacctg 632
>gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081A10f, mRNA sequence
Length = 749
Score = 109 bits (55), Expect = 1e-022
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 414 gagcccgtccacttcgacctgagcgggacggcgttcggcggcatggcgaagcccggccag 473
Query: 102 gccgaccagct 112
|||||||||||
Sbjct: 474 gccgaccagct 484
>gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026K23f, mRNA sequence
Length = 492
Score = 109 bits (55), Expect = 1e-022
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 417 gagcccgtccacttcgacctgagcgggacggcgttcggcggcatggcgaagcccggccag 476
Query: 102 gccgaccagct 112
|||||||||||
Sbjct: 477 gccgaccagct 487
>gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021M10f, mRNA sequence
Length = 609
Score = 103 bits (52), Expect = 8e-021
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 22 gagcccgtccacttcgacctgagcgggacggcgttcggcggcatggcgaagcccggccag 81
Query: 102 gccgacca 109
||||||||
Sbjct: 82 gccgacca 89
Score = 65.9 bits (33), Expect = 2e-009
Identities = 82/97 (84%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 372 gtccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccgga 431
|||||||||||||| ||||||||| | ||||| || || |||||||||||||||||
Sbjct: 355 gtccgcctcacctccagctccggcaagactctcgtggcaagtaacgtcatccccgccggc 414
Query: 432 tggcagcccggcagaacctaccgctccgtcgtcaact 468
|| ||||| || | ||||||||||||||||||||||
Sbjct: 415 tgaaagccc-gcgggacctaccgctccgtcgtcaact 450
Score = 42.1 bits (21), Expect = 0.024
Identities = 57/69 (82%)
Strand = Plus / Plus
Query: 189 gtggacgccggctcaaacgccaactacctggccatggccatcgagtacgagtccggggac 248
||||||||||||| ||| || ||||||| ||| || ||||||||||||| ||| |||
Sbjct: 169 gtggacgccggcttcaacccctactacctcgccgtgctcatcgagtacgaggacggcgac 228
Query: 249 ggggacctg 257
|| ||||||
Sbjct: 229 ggcgacctg 237
>gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081M20f, mRNA sequence
Length = 520
Score = 89.7 bits (45), Expect = 1e-016
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 372 gtccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccgga 431
|||||||||||||| ||||||||| | ||||| || || |||||||||||||||||
Sbjct: 101 gtccgcctcacctccagctccggcaagactctcgtggcaagtaacgtcatccccgccggc 160
Query: 432 tggcagcccggcagaacctaccgctccgtcgtcaact 468
||| |||||||| | ||||||||||||||||||||||
Sbjct: 161 tggaagcccggcggcacctaccgctccgtcgtcaact 197
>gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021D09f, mRNA sequence
Length = 864
Score = 85.7 bits (43), Expect = 2e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| |||||||||||||| |||||||| | ||||| |||| ||||||||
Sbjct: 417 gagcccgtccacttcgacctgagcgggactgcgttcggcggcatggtgaagtccggccag 476
Query: 102 gccgaccagct 112
|||||||||||
Sbjct: 477 gccgaccagct 487
>gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080H17f, mRNA sequence
Length = 701
Score = 69.9 bits (35), Expect = 1e-010
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| |||||||||||||| ||| |||| | ||||||||||||||| |||
Sbjct: 417 gagcccgtccacttcgacctgagcgggaccgcg-tcggcggcatggcgaagcccgg-cag 474
Query: 102 gccgaccagct 112
|||||||||||
Sbjct: 475 gccgaccagct 485
>gb|BG367966.2|BG367966 HVSMEi0015B12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015B12f, mRNA sequence
Length = 869
Score = 61.9 bits (31), Expect = 3e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| |||||||||||||||||| ||| | |||||| |||||| |||||
Sbjct: 414 gagcccgtccacttgaacctgagcgggacggcgtgcggcggcatggcaaagccccgccag 473
Query: 102 gcc 104
|||
Sbjct: 474 gcc 476
>gb|BU983370.1|BU983370 HA29H20r HA Hordeum vulgare subsp. vulgare cDNA clone HA29H20
5-PRIME, mRNA sequence
Length = 485
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 51 cactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccaggccgaccag 110
||||||||||| |||||| ||| ||||| |||||||| |||||||| ||||||||| |
Sbjct: 368 cactttgacctcggcgggaaggccttcggcgccatggccaagcccggacaggccgacaac 427
Query: 111 ctccggaacgc 121
||||| |||||
Sbjct: 428 ctccgcaacgc 438
>gb|BM442260.2|BM442260 EBan01_SQ002_K24_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_K24 5', mRNA sequence
Length = 147
Score = 60.0 bits (30), Expect = 1e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccgg 430
|||| ||||||||||| ||||||| ||| |||||||||| ||| ||| ||||||||||
Sbjct: 76 tccggctcacctcgggttccggcaaggtgctcgtcgccaacaatgtcgtccccgccgg 133
>gb|BI959546.1|BI959546 HVSMEn0020C08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020C08f, mRNA sequence
Length = 737
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgcc 428
|||| |||||||| | |||||||||| ||||||| || ||||||||||||||||
Sbjct: 568 tccggctcacctccgactccggcaggaagctcgtcgtcaacaacgtcatccccgcc 513
>gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped genomic sequences from PCR
products Hordeum vulgare subsp. vulgare genomic, DNA
sequence
Length = 499
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 51 cactttgacctgagcgggacggcgttcggtgccatggc 88
||||||||||||||||| ||||| ||||| ||| ||||
Sbjct: 140 cactttgacctgagcggcacggccttcggcgccctggc 103
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 51 cactttgacctgagcgggacggcgttcggtgccatggc 88
||||||||||||||||| ||||| ||||| ||| ||||
Sbjct: 447 cactttgacctgagcggcacggccttcggcgccctggc 484
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 44.1 bits (22), Expect = 0.006
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 54 tttgacctgagcgggacggcgttcggtgccatggcgaagcccggccaggccgaccagctc 113
|||||| ||||||| || || || || |||||||||||||| ||| ||||||| |||||
Sbjct: 171 tttgacatgagcggcaccgccttgggcgccatggcgaagcctggcatggccgacaagctc 230
Query: 114 cg 115
||
Sbjct: 231 cg 232
>gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12g18 5', mRNA sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 51 cactttgacctgagcgggacggcgttcggtgccatggc 88
||||||||||||||||| ||||| ||||| ||| ||||
Sbjct: 469 cactttgacctgagcggcacggccttcggcgccctggc 506
>gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200037A04F1, mRNA sequence
Length = 420
Score = 44.1 bits (22), Expect = 0.006
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccg 426
|||| |||||||| | |||||||||| ||||||| || ||||||||||||||
Sbjct: 164 tccggctcacctccgactccggcaggaagctcgtcgtcaacaacgtcatccccg 217
>gb|AJ463237.1|AJ463237 AJ463237 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200087A08F1, mRNA sequence
Length = 420
Score = 44.1 bits (22), Expect = 0.006
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccg 426
|||| |||||||| | |||||||||| ||||||| || ||||||||||||||
Sbjct: 103 tccggctcacctccgactccggcaggaagctcgtcgtcaacaacgtcatccccg 156
>gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25g15 5', mRNA sequence
Length = 532
Score = 44.1 bits (22), Expect = 0.006
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 54 tttgacctgagcgggacggcgttcggtgccatggcgaagcccggccaggccgaccagctc 113
|||||| ||||||| || || || || |||||||||||||| ||| ||||||| |||||
Sbjct: 165 tttgacatgagcggcaccgccttgggcgccatggcgaagcctggcatggccgacaagctc 224
Query: 114 cg 115
||
Sbjct: 225 cg 226
>gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_H22 5', mRNA sequence
Length = 631
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 51 cactttgacctgagcgggacggcgttcggtgccatggc 88
||||||||||||||||| ||||| ||||| ||| ||||
Sbjct: 453 cactttgacctgagcggcacggccttcggcgccctggc 490
>gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42I19
5-PRIME, mRNA sequence
Length = 539
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 51 cactttgacctgagcgggacggcgttcggtgccatggc 88
||||||||||||||||| ||||| ||||| ||| ||||
Sbjct: 418 cactttgacctgagcggcacggccttcggcgccctggc 455
>gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48A15
5-PRIME, mRNA sequence
Length = 584
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 51 cactttgacctgagcgggacggcgttcggtgccatggc 88
||||||||||||||||| ||||| ||||| ||| ||||
Sbjct: 467 cactttgacctgagcggcacggccttcggcgccctggc 504
>gb|BG365226.2|BG365226 HVSMEi0001O04f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0001O04f, mRNA sequence
Length = 810
Score = 42.1 bits (21), Expect = 0.024
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggac 70
||||||||||||| ||||||||||||||
Sbjct: 414 gagcccgtgcactgggacctgagcgggac 442
>gb|BE060291.3|BE060291 HVSMEg0011O02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011O02f, mRNA sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 45 ctcgtcgcccgcaacgtcatcccc 68
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 445 ctcgtcgcccgcaacgtcatcccc 468
>gb|AV918336.1|AV918336 AV918336 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l09 3', mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 507 ctcgtcgcccgcaacgtcatcccc 484
>gb|AV918397.1|AV918397 AV918397 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 3', mRNA sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 402 ctcgtcgcccgcaacgtcatcccc 379
>gb|AJ436055.1|AJ436055 AJ436055 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200008F02F1, mRNA sequence
Length = 481
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 43 ctcgtcgcccgcaacgtcatcccc 66
>gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200052C12F1, mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 117 ctcgtcgcccgcaacgtcatcccc 140
>gb|AJ462522.1|AJ462522 AJ462522 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200009F02F2, mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 35 ctcgtcgcccgcaacgtcatcccc 58
>gb|AJ462523.1|AJ462523 AJ462523 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200019C04F1, mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 32 ctcgtcgcccgcaacgtcatcccc 55
>gb|AJ462525.1|AJ462525 AJ462525 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200066D02F1, mRNA sequence
Length = 360
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 8 ctcgtcgcccgcaacgtcatcccc 31
>gb|AJ462588.1|AJ462588 AJ462588 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200042D02F1, mRNA sequence
Length = 360
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 64 ctcgtcgcccgcaacgtcatcccc 87
>gb|BQ663461.1|BQ663461 HU02M06u HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
3-PRIME, mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 520 ctcgtcgcccgcaacgtcatcccc 497
>gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_O01 5', mRNA sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 265 ctcgtcgcccgcaacgtcatcccc 288
>gb|CA004936.1|CA004936 HU12M15u HU Hordeum vulgare subsp. vulgare cDNA clone HU12M15
3-PRIME, mRNA sequence
Length = 469
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 426 ctcgtcgcccgcaacgtcatcccc 403
>gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
3-PRIME, mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 277 ctcgtcgcccgcaacgtcatcccc 254
>gb|CA017320.1|CA017320 HV12M19u HV Hordeum vulgare subsp. vulgare cDNA clone HV12M19
3-PRIME, mRNA sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 429 ctcgtcgcccgcaacgtcatcccc 406
>gb|CB876346.1|CB876346 HX11A03w HX Hordeum vulgare subsp. vulgare cDNA clone HX11A03
3-PRIME, mRNA sequence
Length = 543
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 447 ctcgtcgcccgcaacgtcatcccc 424
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 40.1 bits (20), Expect = 0.095
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 402 ctcgtcgccagcaacgtcatcccc 425
||||||||| ||||||||||||||
Sbjct: 640 ctcgtcgcccgcaacgtcatcccc 663
>gb|BI953744.1|BI953744 HVSMEm0014C01f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0014C01f, mRNA sequence
Length = 619
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 180 gccttcagggtggacgccg 198
|||||||||||||||||||
Sbjct: 425 gccttcagggtggacgccg 407
>gb|BF267210.2|BF267210 HV_CEa0017E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0017E08f, mRNA sequence
Length = 864
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 180 gccttcagggtggacgccg 198
|||||||||||||||||||
Sbjct: 394 gccttcagggtggacgccg 376
>gb|AV912910.1|AV912910 AV912910 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10p05 5', mRNA sequence
Length = 645
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 180 gccttcagggtggacgccg 198
|||||||||||||||||||
Sbjct: 380 gccttcagggtggacgccg 398
>gb|AV916296.1|AV916296 AV916296 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12i14 5', mRNA sequence
Length = 613
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 180 gccttcagggtggacgccg 198
|||||||||||||||||||
Sbjct: 401 gccttcagggtggacgccg 383
>gb|AV917665.1|AV917665 AV917665 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10p05 3', mRNA sequence
Length = 650
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 180 gccttcagggtggacgccg 198
|||||||||||||||||||
Sbjct: 439 gccttcagggtggacgccg 421
>gb|AV934988.1|AV934988 AV934988 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2h08 3', mRNA sequence
Length = 613
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 180 gccttcagggtggacgccg 198
|||||||||||||||||||
Sbjct: 590 gccttcagggtggacgccg 608
>gb|AV936840.1|AV936840 AV936840 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal7o21 3', mRNA sequence
Length = 614
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 180 gccttcagggtggacgccg 198
|||||||||||||||||||
Sbjct: 591 gccttcagggtggacgccg 609
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 95,720
Number of Sequences: 312970
Number of extensions: 95720
Number of successful extensions: 29082
Number of sequences better than 0.5: 59
Number of HSP's better than 0.5 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28983
Number of HSP's gapped (non-prelim): 96
length of query: 697
length of database: 175,134,539
effective HSP length: 19
effective length of query: 678
effective length of database: 169,188,109
effective search space: 114709537902
effective search space used: 114709537902
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)