BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829406.2.1
(673 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI778783.2|BI778783 EBro01_SQ001_H14_R root, 3 week, hyd... 319 7e-086
gb|BI777432.2|BI777432 EBro04_SQ001_D11_R root, 3 week, sal... 319 7e-086
gb|BQ766568.1|BQ766568 EBro08_SQ006_P09 _R root, 3 week, dr... 311 2e-083
gb|BF263225.2|BF263225 HV_CEa0006C22f Hordeum vulgare seedl... 297 2e-079
gb|BQ766335.1|BQ766335 EBro08_SQ005_N13_R root, 3 week, dro... 297 2e-079
gb|BQ766908.1|BQ766908 EBro08_SQ007_O12_R root, 3 week, dro... 297 2e-079
gb|BJ465566.1|BJ465566 BJ465566 K. Sato unpublished cDNA li... 295 1e-078
gb|BM372222.2|BM372222 EBro03_SQ004_F20_R root, 3 week, wat... 289 6e-077
gb|BJ462736.1|BJ462736 BJ462736 K. Sato unpublished cDNA li... 283 4e-075
gb|BQ761559.1|BQ761559 EBem10_SQ001_H05_R embryo, 2 Day ger... 258 2e-067
gb|BF258553.2|BF258553 HVSMEf0016A19f Hordeum vulgare seedl... 242 1e-062
gb|BM443669.2|BM443669 EBem09_SQ001_B17_R embryo, 1 Day ger... 230 5e-059
gb|BF626638.3|BF626638 HVSMEa0018P12f Hordeum vulgare seedl... 202 1e-050
gb|BF627929.2|BF627929 HVSMEb0006K19f Hordeum vulgare seedl... 202 1e-050
gb|BF257180.2|BF257180 HVSMEf0012B18f Hordeum vulgare seedl... 202 1e-050
gb|BF259798.2|BF259798 HVSMEf0020E17f Hordeum vulgare seedl... 202 1e-050
gb|BF257301.3|BF257301 HVSMEf0012H16f Hordeum vulgare seedl... 202 1e-050
gb|BF260973.3|BF260973 HVSMEf0023G21f Hordeum vulgare seedl... 202 1e-050
gb|BM817085.1|BM817085 HC01F06_T3.ab1 HC Hordeum vulgare su... 202 1e-050
gb|BI777138.2|BI777138 EBro03_SQ002_B22_R root, 3 week, wat... 202 1e-050
gb|BM372224.2|BM372224 EBro03_SQ004_F22_R root, 3 week, wat... 202 1e-050
gb|BM369950.2|BM369950 EBro08_SQ002_H05_R root, 3 week, dro... 202 1e-050
gb|BQ763768.1|BQ763768 EBro03_SQ005_J07_R root, 3 week, wat... 202 1e-050
gb|BQ768251.1|BQ768251 EBro08_SQ011_M05_R root, 3 week, dro... 202 1e-050
gb|BU996454.1|BU996454 HM13K17r HM Hordeum vulgare subsp. v... 202 1e-050
gb|BE060209.2|BE060209 HVSMEg0011J02f Hordeum vulgare pre-a... 194 3e-048
gb|BF265744.2|BF265744 HV_CEa0013D13f Hordeum vulgare seedl... 194 3e-048
gb|BF628119.3|BF628119 HVSMEb0003C23f Hordeum vulgare seedl... 194 3e-048
gb|BM444307.1|BM444307 EBem09_SQ004_M10_R embryo, 1 Day ger... 180 4e-044
gb|BF255794.1|BF255794 HVSMEf0007N07f Hordeum vulgare seedl... 172 1e-041
gb|BQ767572.1|BQ767572 EBro08_SQ009_D08_R root, 3 week, dro... 172 1e-041
gb|BI778861.2|BI778861 EBro01_SQ001_M16_R root, 3 week, hyd... 155 2e-036
gb|BI960467.1|BI960467 HVSMEn0024L06f Hordeum vulgare rachi... 147 5e-034
gb|BF260771.3|BF260771 HVSMEf0022O11f Hordeum vulgare seedl... 147 5e-034
gb|BI958660.1|BI958660 HVSMEn0016B18f Hordeum vulgare rachi... 143 9e-033
gb|BI960428.1|BI960428 HVSMEn0024J02f Hordeum vulgare rachi... 139 1e-031
gb|BF257788.2|BF257788 HVSMEf0013N22f Hordeum vulgare seedl... 129 1e-028
gb|BQ468701.1|BQ468701 HM02A22r HM Hordeum vulgare subsp. v... 123 8e-027
gb|BQ661125.1|BQ661125 HM02A22u HM Hordeum vulgare subsp. v... 123 8e-027
gb|BQ765560.1|BQ765560 EBro03_SQ007_D15_R root, 3 week, wat... 109 1e-022
gb|BQ761796.1|BQ761796 EBem10_SQ001_L19_R embryo, 2 Day ger... 86 2e-015
gb|BF254484.3|BF254484 HVSMEf0004C12f Hordeum vulgare seedl... 78 4e-013
gb|BF065110.2|BF065110 HV_CEb0023A22f Hordeum vulgare seedl... 72 3e-011
gb|BI959480.1|BI959480 HVSMEn0019N11f Hordeum vulgare rachi... 62 2e-008
gb|BM444827.1|BM444827 EBem09_SQ006_J15_R embryo, 1 Day ger... 62 2e-008
gb|BQ761680.1|BQ761680 EBem10_SQ001_D16_R embryo, 2 Day ger... 62 2e-008
gb|BF260839.3|BF260839 HVSMEf0023B07f Hordeum vulgare seedl... 56 2e-006
gb|BI957407.1|BI957407 HVSMEn0009G07f Hordeum vulgare rachi... 46 0.001
gb|BQ761679.1|BQ761679 EBem10_SQ001_D14_R embryo, 2 Day ger... 44 0.006
gb|BI960465.1|BI960465 HVSMEn0024L04f Hordeum vulgare rachi... 38 0.36
gb|BI960474.1|BI960474 HVSMEn0024L14f Hordeum vulgare rachi... 38 0.36
gb|BQ469985.1|BQ469985 HX01G24T HX Hordeum vulgare subsp. v... 38 0.36
>gb|BI778783.2|BI778783 EBro01_SQ001_H14_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_H14 5', mRNA sequence
Length = 530
Score = 319 bits (161), Expect = 7e-086
Identities = 248/277 (89%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 434 ctcacggcagagtgtaggctccgcacttgtagccgacagggcggtcgacgaggttgcagc 375
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
|||||||||||| ||||| ||||| |||||||| |||| ||||||| || | ||| |
Sbjct: 374 gcttggggatggacatggcgacctccggcttgatgccggcgctcttggcggtgtcggaga 315
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcagc 255
Query: 477 agccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagcttca 536
| ||| ||||||||||||| |||||| |||| |||| ||||||||||||||||||||||
Sbjct: 254 acccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccagcttca 195
Query: 537 gcgccatcctgtccggcggcgtcgccccgcactcgcc 573
|||||||| |||||| |||||| ||||||||||||
Sbjct: 194 gcgccatcttgtccgcgggcgtcttcccgcactcgcc 158
>gb|BI777432.2|BI777432 EBro04_SQ001_D11_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_D11 5', mRNA sequence
Length = 481
Score = 319 bits (161), Expect = 7e-086
Identities = 248/277 (89%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ctcacggcagagtgtaggctccgcacttgtagccgacagggcggtcgacgaggttgcagc 322
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
|||||||||||| ||||| ||||| |||||||| |||| ||||||| || | ||| |
Sbjct: 321 gcttggggatggacatggcgacctccggcttgatgccggcgctcttggcggtgtcggaga 262
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcagc 202
Query: 477 agccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagcttca 536
| ||| ||||||||||||| |||||| |||| |||| ||||||||||||||||||||||
Sbjct: 201 acccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccagcttca 142
Query: 537 gcgccatcctgtccggcggcgtcgccccgcactcgcc 573
|||||||| |||||| |||||| ||||||||||||
Sbjct: 141 gcgccatcttgtccgcgggcgtcttcccgcactcgcc 105
>gb|BQ766568.1|BQ766568 EBro08_SQ006_P09 _R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P09 5', mRNA sequence
Length = 424
Score = 311 bits (157), Expect = 2e-083
Identities = 247/277 (89%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 378 ctcacggcagagtgtaggctccgcacttgtagccgacagggcggtcgacgaggttgcagc 319
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
|||||||||||| ||||| ||||| |||||||| |||| ||||||| || | ||| |
Sbjct: 318 gcttggggatggacatggcgacctccggcttgatgccggcgctcttggcggtgtcggaga 259
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcagc 199
Query: 477 agccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagcttca 536
| ||| ||||||||||||| |||||| |||| |||| ||||||||||||||||| ||||
Sbjct: 198 acccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccagattca 139
Query: 537 gcgccatcctgtccggcggcgtcgccccgcactcgcc 573
|||||||| |||||| |||||| ||||||||||||
Sbjct: 138 gcgccatcttgtccgcgggcgtcttcccgcactcgcc 102
>gb|BF263225.2|BF263225 HV_CEa0006C22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006C22f, mRNA sequence
Length = 593
Score = 297 bits (150), Expect = 2e-079
Identities = 246/278 (88%)
Strand = Plus / Minus
Query: 296 gctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcag 355
||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 414 gctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcag 355
Query: 356 cgcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggac 415
||||||||||||| ||||| || || |||||||| |||| ||||||| || | |||
Sbjct: 354 cgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 295
Query: 416 agcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcag 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 294 agcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcag 235
Query: 476 cagccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagcttc 535
|| ||| ||||||||||||| |||||| |||| |||| |||||||||||||||| ||||
Sbjct: 234 cacccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttc 175
Query: 536 agcgccatcctgtccggcggcgtcgccccgcactcgcc 573
||||||||| |||||| |||||| ||||||||||||
Sbjct: 174 agcgccatcttgtccgcgggcgtcttcccgcactcgcc 137
>gb|BQ766335.1|BQ766335 EBro08_SQ005_N13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_N13 5', mRNA sequence
Length = 526
Score = 297 bits (150), Expect = 2e-079
Identities = 246/278 (88%)
Strand = Plus / Minus
Query: 296 gctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcag 355
||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 425 gctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcag 366
Query: 356 cgcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggac 415
||||||||||||| ||||| || || |||||||| |||| ||||||| || | |||
Sbjct: 365 cgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 306
Query: 416 agcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcag 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 305 agcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcag 246
Query: 476 cagccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagcttc 535
|| ||| ||||||||||||| |||||| |||| |||| |||||||||||||||| ||||
Sbjct: 245 cacccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttc 186
Query: 536 agcgccatcctgtccggcggcgtcgccccgcactcgcc 573
||||||||| |||||| |||||| ||||||||||||
Sbjct: 185 agcgccatcttgtccgcgggcgtcttcccgcactcgcc 148
>gb|BQ766908.1|BQ766908 EBro08_SQ007_O12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_O12 5', mRNA sequence
Length = 573
Score = 297 bits (150), Expect = 2e-079
Identities = 246/278 (88%)
Strand = Plus / Minus
Query: 296 gctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcag 355
||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 412 gctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcag 353
Query: 356 cgcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggac 415
||||||||||||| ||||| || || |||||||| |||| ||||||| || | |||
Sbjct: 352 cgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 293
Query: 416 agcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcag 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 292 agcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcag 233
Query: 476 cagccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagcttc 535
|| ||| ||||||||||||| |||||| |||| |||| |||||||||||||||| ||||
Sbjct: 232 cacccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttc 173
Query: 536 agcgccatcctgtccggcggcgtcgccccgcactcgcc 573
||||||||| |||||| |||||| ||||||||||||
Sbjct: 172 agcgccatcttgtccgcgggcgtcttcccgcactcgcc 135
>gb|BJ465566.1|BJ465566 BJ465566 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24d01 3', mRNA sequence
Length = 472
Score = 295 bits (149), Expect = 1e-078
Identities = 245/277 (88%)
Strand = Plus / Plus
Query: 296 gctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcag 355
||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 196 gctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcag 255
Query: 356 cgcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggac 415
||||||||||||| ||||| || || |||||||| |||| ||||||| || | |||
Sbjct: 256 cgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 315
Query: 416 agcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcag 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 316 agcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcag 375
Query: 476 cagccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagcttc 535
|| ||| ||||||||||||| |||||| |||| |||| |||||||||||||||| ||||
Sbjct: 376 cacccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttc 435
Query: 536 agcgccatcctgtccggcggcgtcgccccgcactcgc 572
||||||||| |||||| |||||| |||||||||||
Sbjct: 436 agcgccatcttgtccgcgggcgtcttcccgcactcgc 472
>gb|BM372222.2|BM372222 EBro03_SQ004_F20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_F20 5', mRNA sequence
Length = 430
Score = 289 bits (146), Expect = 6e-077
Identities = 245/278 (88%)
Strand = Plus / Minus
Query: 296 gctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcag 355
||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 430 gctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcag 371
Query: 356 cgcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggac 415
||||||||||||| ||||| || || |||||||| |||| ||||||| || | |||
Sbjct: 370 cgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 311
Query: 416 agcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcag 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 310 agcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcag 251
Query: 476 cagccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagcttc 535
|| ||| ||||||||||||| |||||| |||| |||| |||||||||||||||| ||||
Sbjct: 250 cacccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttc 191
Query: 536 agcgccatcctgtccggcggcgtcgccccgcactcgcc 573
|||||||| |||||| |||||| ||||||||||||
Sbjct: 190 agcgccattttgtccgcgggcgtcttcccgcactcgcc 153
>gb|BJ462736.1|BJ462736 BJ462736 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24d01 5', mRNA sequence
Length = 493
Score = 283 bits (143), Expect = 4e-075
Identities = 245/278 (88%), Gaps = 1/278 (0%)
Strand = Plus / Minus
Query: 296 gctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcag 355
||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 278 gctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcag 219
Query: 356 cgcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggac 415
||||||||||||| ||||| || || |||||||| |||| ||||||| || | |||
Sbjct: 218 cgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 159
Query: 416 agcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcag 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 158 agcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcag 99
Query: 476 cagccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagcttc 535
|| ||| ||||||||||||| |||||| |||| |||| |||||||||||||||| ||||
Sbjct: 98 cacccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttc 39
Query: 536 agcgccatcc-tgtccggcggcgtcgccccgcactcgc 572
|||||||| | |||||| |||||| |||||||||||
Sbjct: 38 agcgccatncttgtccgcgggcgtcttcccgcactcgc 1
>gb|BQ761559.1|BQ761559 EBem10_SQ001_H05_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_H05 5', mRNA sequence
Length = 329
Score = 258 bits (130), Expect = 2e-067
Identities = 208/234 (88%)
Strand = Plus / Minus
Query: 296 gctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcag 355
||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 234 gctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcag 175
Query: 356 cgcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggac 415
||||||||||||| ||||| || || |||||||| |||| ||||||| || | |||
Sbjct: 174 cgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 115
Query: 416 agcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcag 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 114 agcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcag 55
Query: 476 cagccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgcc 529
|| ||| ||||||||||||| |||||| |||| |||| |||||||||||||||
Sbjct: 54 cacccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgcc 1
>gb|BF258553.2|BF258553 HVSMEf0016A19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016A19f, mRNA sequence
Length = 593
Score = 242 bits (122), Expect = 1e-062
Identities = 239/278 (85%)
Strand = Plus / Minus
Query: 296 gctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcag 355
||||| ||||||||||| ||||||||||| ||||||| ||||||||| |||| ||||
Sbjct: 422 gctcacggcagagtgtatgctccgcacttgaagccgacagggcggtcgcgaaggtcgcag 363
Query: 356 cgcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggac 415
|||||||||| || ||||| || || |||||||| |||| ||||||| || | |||
Sbjct: 362 cgcttggggagggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 303
Query: 416 agcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcag 475
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 302 agcatgacggcgcagaggcacttggggttctgcttcccgatggtgtgcaccgccgtgcag 243
Query: 476 cagccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagcttc 535
|| ||| ||||||||||||| |||||| ||| |||| |||||||||||||||| ||||
Sbjct: 242 cacccgctggacggcgccgacttggggtcttgccccgccgacgcgcacggcgccaacttc 183
Query: 536 agcgccatcctgtccggcggcgtcgccccgcactcgcc 573
||||||||| |||||| |||||| ||||||||||||
Sbjct: 182 agcgccatcttgtccgcgggcgtcttcccgcactcgcc 145
>gb|BM443669.2|BM443669 EBem09_SQ001_B17_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ001_B17 5', mRNA sequence
Length = 403
Score = 230 bits (116), Expect = 5e-059
Identities = 176/196 (89%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 196 ctcacggcagagtgtaggctccgcacttgtagccgacagggcggtcgacgaggttgcagc 137
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
|||||||||||| ||||| ||||| |||||||| |||| ||||||| | | ||| |
Sbjct: 136 gcttggggatggacatggcgacctccggcttgatgccggcgctcttggcgatgtcggaga 77
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 76 gcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcagc 17
Query: 477 agccgttggacggcgc 492
| ||| ||||||||||
Sbjct: 16 acccgctggacggcgc 1
>gb|BF626638.3|BF626638 HVSMEa0018P12f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018P12f, mRNA sequence
Length = 763
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 418 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 359
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 358 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 299
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 298 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 242
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 241 agctgctggagggcgccgag 222
>gb|BF627929.2|BF627929 HVSMEb0006K19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006K19f, mRNA sequence
Length = 792
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 425 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 366
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 365 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 306
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 305 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 249
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 248 agctgctggagggcgccgag 229
>gb|BF257180.2|BF257180 HVSMEf0012B18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012B18f, mRNA sequence
Length = 540
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 415 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 356
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 355 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 296
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 295 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 239
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 238 agctgctggagggcgccgag 219
>gb|BF259798.2|BF259798 HVSMEf0020E17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020E17f, mRNA sequence
Length = 534
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 421 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 362
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 361 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 302
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 301 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 245
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 244 agctgctggagggcgccgag 225
>gb|BF257301.3|BF257301 HVSMEf0012H16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012H16f, mRNA sequence
Length = 537
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 311 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 252
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 251 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 192
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 191 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 135
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 134 agctgctggagggcgccgag 115
>gb|BF260973.3|BF260973 HVSMEf0023G21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023G21f, mRNA sequence
Length = 651
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 418 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 359
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 358 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 299
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 298 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 242
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 241 agctgctggagggcgccgag 222
>gb|BM817085.1|BM817085 HC01F06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC01F06_T3.ab1 similar to (AC007661) hypothetical
protein [Arabidopsis thaliana], mRNA sequence
Length = 768
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 409 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 350
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 349 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 290
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 289 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 233
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 232 agctgctggagggcgccgag 213
>gb|BI777138.2|BI777138 EBro03_SQ002_B22_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_B22 5', mRNA sequence
Length = 273
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 267 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 208
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 207 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 148
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 147 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 91
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 90 agctgctggagggcgccgag 71
>gb|BM372224.2|BM372224 EBro03_SQ004_F22_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_F22 5', mRNA sequence
Length = 436
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 430 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 371
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 370 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 311
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 310 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 254
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 253 agctgctggagggcgccgag 234
>gb|BM369950.2|BM369950 EBro08_SQ002_H05_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_H05 5', mRNA sequence
Length = 278
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 255 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 196
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 195 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 136
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 135 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 79
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 78 agctgctggagggcgccgag 59
>gb|BQ763768.1|BQ763768 EBro03_SQ005_J07_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_J07 5', mRNA sequence
Length = 628
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 427 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 368
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 367 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 308
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 307 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 251
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 250 agctgctggagggcgccgag 231
>gb|BQ768251.1|BQ768251 EBro08_SQ011_M05_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_M05 5', mRNA sequence
Length = 523
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 427 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 368
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 367 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 308
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 307 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 251
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 250 agctgctggagggcgccgag 231
>gb|BU996454.1|BU996454 HM13K17r HM Hordeum vulgare subsp. vulgare cDNA clone HM13K17
5-PRIME, mRNA sequence
Length = 534
Score = 202 bits (102), Expect = 1e-050
Identities = 176/200 (88%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 398 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 339
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 338 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 279
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 278 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 222
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 221 agctgctggagggcgccgag 202
>gb|BE060209.2|BE060209 HVSMEg0011J02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011J02f, mRNA sequence
Length = 542
Score = 194 bits (98), Expect = 3e-048
Identities = 175/200 (87%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 429 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 370
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||| | ||||||||||||||||||| | ||||||| || |||||
Sbjct: 369 gcttggggatggtgatgccgacctcgggcttgatcccggccatcttggcggtgccggaca 310
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 309 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 253
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 252 agctgctggagggcgccgag 233
>gb|BF265744.2|BF265744 HV_CEa0013D13f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013D13f, mRNA sequence
Length = 569
Score = 194 bits (98), Expect = 3e-048
Identities = 175/200 (87%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | || |||||
Sbjct: 403 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgtagcagc 344
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 343 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 284
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 283 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 227
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 226 agctgctggagggcgccgag 207
>gb|BF628119.3|BF628119 HVSMEb0003C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003C23f, mRNA sequence
Length = 492
Score = 194 bits (98), Expect = 3e-048
Identities = 175/200 (87%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 425 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 366
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||| ||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 365 gcttgcggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 306
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 305 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 249
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 248 agctgctggagggcgccgag 229
>gb|BM444307.1|BM444307 EBem09_SQ004_M10_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_M10 5', mRNA sequence
Length = 410
Score = 180 bits (91), Expect = 4e-044
Identities = 165/189 (87%), Gaps = 3/189 (1%)
Strand = Plus / Minus
Query: 308 gtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagcgcttggggatg 367
||||||||||||||||||||||||||||| |||||| | | |||||||||||||||||||
Sbjct: 409 gtgtaatctccgcacttgtagccgacgggacggtcggccatgttgcagcgcttggggatg 350
Query: 368 gtgatggccacctcgggcttgatcccggacttcttggccgtcttggacagcatgacggcg 427
|||||| | ||||||||||||||||||| | ||||||| || ||||||||||||||||
Sbjct: 349 gtgatgacgacctcgggcttgatcccggccatcttggcggtgccggacagcatgacggcg 290
Query: 428 cagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagcagccgttggac 487
|| ||||| |||||| ||| ||||||||||||||||||| |||||||| | ||||
Sbjct: 289 cacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagcagctgctggag 233
Query: 488 ggcgccgag 496
|||||||||
Sbjct: 232 ggcgccgag 224
>gb|BF255794.1|BF255794 HVSMEf0007N07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007N07f, mRNA sequence
Length = 1011
Score = 172 bits (87), Expect = 1e-041
Identities = 164/189 (86%), Gaps = 3/189 (1%)
Strand = Plus / Minus
Query: 308 gtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagcgcttggggatg 367
||||| ||||||||||||||||||||||| |||||| | | |||||||||||||||||||
Sbjct: 534 gtgtattctccgcacttgtagccgacgggacggtcggccatgttgcagcgcttggggatg 475
Query: 368 gtgatggccacctcgggcttgatcccggacttcttggccgtcttggacagcatgacggcg 427
||||||| ||||||||||||||||||| | ||||||| || ||||||||||||||||
Sbjct: 474 gtgatggagacctcgggcttgatcccggccatcttggcggtgccggacagcatgacggcg 415
Query: 428 cagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagcagccgttggac 487
|| ||||| |||||| ||| ||||||||||||||||||| |||||||| | ||||
Sbjct: 414 cacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagcagctgctggag 358
Query: 488 ggcgccgag 496
|||||||||
Sbjct: 357 ggcgccgag 349
>gb|BQ767572.1|BQ767572 EBro08_SQ009_D08_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_D08 5', mRNA sequence
Length = 372
Score = 172 bits (87), Expect = 1e-041
Identities = 126/139 (90%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 156 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 97
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
||||||||||||||||||| ||||||||||||||||||| | ||||||| || |||||
Sbjct: 96 gcttggggatggtgatggcgacctcgggcttgatcccggccatcttggcggtgccggaca 37
Query: 417 gcatgacggcgcagaggca 435
||||||||||||| |||||
Sbjct: 36 gcatgacggcgcacaggca 18
>gb|BI778861.2|BI778861 EBro01_SQ001_M16_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_M16 5', mRNA sequence
Length = 528
Score = 155 bits (78), Expect = 2e-036
Identities = 120/134 (89%)
Strand = Plus / Minus
Query: 302 ggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagcgcttg 361
||||| |||||||||||||| ||||||||||||||||||||| | | |||||||||||||
Sbjct: 396 ggcagcgtgtaatctccgcagttgtagccgacggggcggtcggccatgttgcagcgcttg 337
Query: 362 gggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggacagcatg 421
|||||||||||||| ||||||||||||||||||| | || |||| || ||||||||||
Sbjct: 336 gggatggtgatggcgacctcgggcttgatcccggccatcctggcggtgccggacagcatg 277
Query: 422 acggcgcagaggca 435
|||||||| |||||
Sbjct: 276 acggcgcacaggca 263
Score = 58.0 bits (29), Expect = 4e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 452 ccgatggtgtgcaccgccgtgcagcagccgttggacggcgccgag 496
||||||||||||||||||| |||||||| | |||| |||||||||
Sbjct: 249 ccgatggtgtgcaccgccgagcagcagctgctggagggcgccgag 205
>gb|BI960467.1|BI960467 HVSMEn0024L06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L06f, mRNA sequence
Length = 635
Score = 147 bits (74), Expect = 5e-034
Identities = 159/187 (85%), Gaps = 3/187 (1%)
Strand = Plus / Minus
Query: 310 gtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagcgcttggggatggt 369
||||| |||||||||||| |||| |||||||||| | | ||| ||||||||||||||||
Sbjct: 409 gtaatatccgcacttgtacccgaaggggcggtcgcccatgttccagcgcttggggatggc 350
Query: 370 gatggccacctcgggcttgatcccggacttcttggccgtcttggacagcatgacggcgca 429
|||||| ||||||||||||||||||| | | ||||| || ||||||||||||||||||
Sbjct: 349 gatggcgacctcgggcttgatcccggccatgttggcggtgccggacagcatgacggcgca 290
Query: 430 gaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagcagccgttggacgg 489
||||| |||||| ||| ||||||||||||||||||| |||||||| | |||| ||
Sbjct: 289 caggcagctggggct---cttgccgatggtgtgcaccgccgagcagcagctgntggaggg 233
Query: 490 cgccgag 496
|||||||
Sbjct: 232 cgccgag 226
>gb|BF260771.3|BF260771 HVSMEf0022O11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022O11f, mRNA sequence
Length = 541
Score = 147 bits (74), Expect = 5e-034
Identities = 170/200 (85%), Gaps = 4/200 (2%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| ||||||| ||||||| || ||||||| ||||||||| | | ||||||||
Sbjct: 417 ctcaaggcagcgtgtaatatccgcacatg-agccgacagggcggtcggccatgttgcagc 359
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
|| |||||||||||||||| ||||||||||||||||||| | ||||| | || |||||
Sbjct: 358 gcatggggatggtgatggcgacctcgggcttgatcccggccatcttgccggtgccggaca 299
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 298 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 242
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 241 agctgctggagggcgccgag 222
>gb|BI958660.1|BI958660 HVSMEn0016B18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016B18f, mRNA sequence
Length = 632
Score = 143 bits (72), Expect = 9e-033
Identities = 160/189 (84%), Gaps = 3/189 (1%)
Strand = Plus / Minus
Query: 308 gtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagcgcttggggatg 367
|||||||||||||| |||||||||| ||| |||||| | | ||| ||||||||||||||
Sbjct: 412 gtgtaatctccgcaattgtagccgaggggccggtcggccatgttcaagcgcttggggatg 353
Query: 368 gtgatggccacctcgggcttgatcccggacttcttggccgtcttggacagcatgacggcg 427
|||||||| || |||||||||||||||| | ||||||| || ||||||||||||||||
Sbjct: 352 gtgatggcgacttcgggcttgatcccggccatcttggcggtgccggacagcatgacggcg 293
Query: 428 cagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagcagccgttggac 487
|| ||||| |||||| ||| | ||||||||||||||||| |||||||| | ||||
Sbjct: 292 cacaggcagctggggct---cttgcngatggtgtgcaccgccgagcagcagctgctggag 236
Query: 488 ggcgccgag 496
|||||||||
Sbjct: 235 ggcgccgag 227
>gb|BI960428.1|BI960428 HVSMEn0024J02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024J02f, mRNA sequence
Length = 621
Score = 139 bits (70), Expect = 1e-031
Identities = 168/200 (84%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| ||||||| |||||||||||||| |||||||||||| | | ||||||||
Sbjct: 421 ctcaaggcagcgtgtaatgtccgcacttgtagcgtacggggcggtcggccatgttgcagc 362
Query: 357 gcttggggatggtgatggccacctcgggcttgatcccggacttcttggccgtcttggaca 416
|||||||||||||||||| | |||||||||||||||| | | ||| | || |||||
Sbjct: 361 gcttggggatggtgatggggtcttcgggcttgatcccggccatgttgtcggtgccggaca 302
Query: 417 gcatgacggcgcagaggcactgggggctctgcttcccgatggtgtgcaccgccgtgcagc 476
||||||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||
Sbjct: 301 gcatgacggcgcacaggcagctggggct---cttgccgatggtgtgcaccgccgagcagc 245
Query: 477 agccgttggacggcgccgag 496
||| | |||| |||||||||
Sbjct: 244 agctgctggagggcgccgag 225
>gb|BF257788.2|BF257788 HVSMEf0013N22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013N22f, mRNA sequence
Length = 855
Score = 129 bits (65), Expect = 1e-028
Identities = 138/161 (85%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 414 acagcatgacggcgcagaggcactgggggctctgcttcc-cgatggtgtgcaccgccgtg 472
||||||| |||| |||||||| | |||||||||||||| | ||||||||||||||||||
Sbjct: 294 acagcatcccggcccagaggcagttggggctctgcttccaccatggtgtgcaccgccgtg 235
Query: 473 cagcagccgttggacggcgccgagctggggttctgcgccgcggacgcgcacggcgccagc 532
||||| ||| ||| ||||||||| |||||| ||| |||| ||||||||||||||||||
Sbjct: 234 cagcacccgctggtcggcgccgacttggggtcgtgccccgccgacgcgcacggcgccagc 175
Query: 533 ttcagcgccatcctgtccggcggcgtcgccccgcactcgcc 573
|||||||||||| ||| | |||||| ||||||||||||
Sbjct: 174 ttcagcgccatctagtcagcgggcgtcttcccgcactcgcc 134
>gb|BQ468701.1|BQ468701 HM02A22r HM Hordeum vulgare subsp. vulgare cDNA clone HM02A22
5-PRIME, mRNA sequence
Length = 455
Score = 123 bits (62), Expect = 8e-027
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 317 ccgcacttgtagccgacggggcggtcgacgaggttgcagcgcttggggatggtgatggcc 376
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 402 ccgcacttgtagccgacggggcggtcggcgaggtcgcagcgcttggggatggtgatggcc 343
Query: 377 acctcgggcttgatcccg 394
||||| ||||||| ||||
Sbjct: 342 acctccggcttgaccccg 325
Score = 48.1 bits (24), Expect = 4e-004
Identities = 50/56 (89%), Gaps = 2/56 (3%)
Strand = Plus / Minus
Query: 520 gcacggcgccagcttcagcgccatcctg-tccggcggcgtcgccccgcactcgccc 574
|||||||||||||||||| ||| ||||| |||||||| || || ||||||||||||
Sbjct: 199 gcacggcgccagcttcagggcc-tcctgctccggcggggtggcgccgcactcgccc 145
>gb|BQ661125.1|BQ661125 HM02A22u HM Hordeum vulgare subsp. vulgare cDNA clone HM02A22
3-PRIME, mRNA sequence
Length = 478
Score = 123 bits (62), Expect = 8e-027
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 317 ccgcacttgtagccgacggggcggtcgacgaggttgcagcgcttggggatggtgatggcc 376
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 284 ccgcacttgtagccgacggggcggtcggcgaggtcgcagcgcttggggatggtgatggcc 343
Query: 377 acctcgggcttgatcccg 394
||||| ||||||| ||||
Sbjct: 344 acctccggcttgaccccg 361
>gb|BQ765560.1|BQ765560 EBro03_SQ007_D15_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_D15 5', mRNA sequence
Length = 361
Score = 109 bits (55), Expect = 1e-022
Identities = 70/75 (93%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagc 356
|||| ||||| |||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 76 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagc 17
Query: 357 gcttggggatggtga 371
|||||||||||||||
Sbjct: 16 gcttggggatggtga 2
>gb|BQ761796.1|BQ761796 EBem10_SQ001_L19_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_L19 5', mRNA sequence
Length = 288
Score = 85.7 bits (43), Expect = 2e-015
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcag 355
|||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 59 ctcacggcagagtgtaggctccgcacttgtagccgacagggcggtcgacgaggttgcag 1
>gb|BF254484.3|BF254484 HVSMEf0004C12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004C12f, mRNA sequence
Length = 287
Score = 77.8 bits (39), Expect = 4e-013
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 297 ctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcg 343
|||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 55 ctcaaggcagcgtgtaatctccgcacttgtagccgacggggcggtcg 9
>gb|BF065110.2|BF065110 HV_CEb0023A22f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023A22f, mRNA sequence
Length = 565
Score = 71.9 bits (36), Expect = 3e-011
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 317 ccgcacttgtagccgacggggcggtcgacgaggttgcagcgcttggggatggtgatggcc 376
||||| ||||||||||||||||||| | ||| | |||||||||||||||||| |||||
Sbjct: 388 ccgcatttgtagccgacggggcggttggcgatggcgcagcgcttggggatggtcatggcg 329
Query: 377 acctcgggcttgatcccggacttcttggccgtcttggacagcatgacggcgcagaggcac 436
|| |||| |||| |||| || || || ||||||||||||||||||||||||||
Sbjct: 328 acggcggggttgacgccggcctggcgcgcggtgctggacagcatgacggcgcagaggcac 269
Query: 437 tgggggct 444
| ||||||
Sbjct: 268 ttggggct 261
Score = 61.9 bits (31), Expect = 2e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 517 cgcgcacggcgccagcttcagcgccatcctgtccg 551
||||||||| |||||||||||||||||||||||||
Sbjct: 191 cgcgcacggggccagcttcagcgccatcctgtccg 157
>gb|BI959480.1|BI959480 HVSMEn0019N11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019N11f, mRNA sequence
Length = 656
Score = 61.9 bits (31), Expect = 2e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 517 cgcgcacggcgccagcttcagcgccatcctgtccg 551
||||||||| |||||||||||||||||||||||||
Sbjct: 180 cgcgcacggggccagcttcagcgccatcctgtccg 146
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 411 tggacagcatgacggcgcagaggcactgggggct 444
||||||||||||||| ||||||||||| ||||||
Sbjct: 283 tggacagcatgacggagcagaggcacttggggct 250
>gb|BM444827.1|BM444827 EBem09_SQ006_J15_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_J15 5', mRNA sequence
Length = 263
Score = 61.9 bits (31), Expect = 2e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 317 ccgcacttgtagccgacggggcggtcgacgaggttgcagcgcttggggatggtgatggc 375
||||| ||||||||||||||||||| | ||| | |||||||||||||||||| |||||
Sbjct: 76 ccgcatttgtagccgacggggcggttggcgatggcgcagcgcttggggatggtcatggc 18
>gb|BQ761680.1|BQ761680 EBem10_SQ001_D16_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_D16 5', mRNA sequence
Length = 300
Score = 61.9 bits (31), Expect = 2e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 517 cgcgcacggcgccagcttcagcgccatcctgtccg 551
||||||||| |||||||||||||||||||||||||
Sbjct: 169 cgcgcacggggccagcttcagcgccatcctgtccg 135
Score = 56.0 bits (28), Expect = 2e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 411 tggacagcatgacggcgcagaggcactggggg 442
||||||||||||||||||||||||||| ||||
Sbjct: 272 tggacagcatgacggcgcagaggcacttgggg 241
>gb|BF260839.3|BF260839 HVSMEf0023B07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023B07f, mRNA sequence
Length = 862
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 310 gtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagcgcttggggatggt 369
||||||||||||||||||| || ||| ||||||| | | |||| ||| |||||||||||
Sbjct: 406 gtaatctccgcacttgtagtcgccggtgcggtcggccatgttgtagctcttggggatgga 347
Query: 370 gatg 373
||||
Sbjct: 346 gatg 343
>gb|BI957407.1|BI957407 HVSMEn0009G07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009G07f, mRNA sequence
Length = 651
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 452 ccgatggtgtgcaccgccgtgcagcag 478
||||||||||||||||||| |||||||
Sbjct: 273 ccgatggtgtgcaccgccgagcagcag 247
>gb|BQ761679.1|BQ761679 EBem10_SQ001_D14_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_D14 5', mRNA sequence
Length = 166
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 522 acggcgccagcttcagcgccatcctgtccg 551
|||| ||||| |||||||||||||||||||
Sbjct: 166 acggggccagattcagcgccatcctgtccg 137
>gb|BI960465.1|BI960465 HVSMEn0024L04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L04f, mRNA sequence
Length = 639
Score = 38.2 bits (19), Expect = 0.36
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 454 gatggtgtgcaccgccgtgcagcagccgttggacggcgccgag 496
||||||||||||| | | |||||||| | |||| |||||||||
Sbjct: 269 gatggtgtgcacccctgagcagcagctgctggagggcgccgag 227
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,099
Number of Sequences: 312970
Number of extensions: 86099
Number of successful extensions: 24160
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24047
Number of HSP's gapped (non-prelim): 85
length of query: 673
length of database: 175,134,539
effective HSP length: 19
effective length of query: 654
effective length of database: 169,188,109
effective search space: 110649023286
effective search space used: 110649023286
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)