BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802552.2.1
(252 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV909045.1|AV909045 AV909045 K. Sato unpublished cDNA li... 123 3e-027
gb|BJ450964.1|BJ450964 BJ450964 K. Sato unpublished cDNA li... 111 1e-023
emb|Y09233.1|HVCHS2 H.vulgare mRNA for homoeriodictyol/erio... 84 2e-015
gb|AW982677.3|AW982677 HVSMEg0003O15f Hordeum vulgare pre-a... 68 1e-010
gb|CK124929.1|CK124929 BES1824111A1g01 BES1824 Hordeum vulg... 60 4e-008
gb|AV924405.1|AV924405 AV924405 K. Sato unpublished cDNA li... 50 3e-005
gb|AV925136.1|AV925136 AV925136 K. Sato unpublished cDNA li... 50 3e-005
gb|BI778287.2|BI778287 EBro07_SQ002_M07_R root, 3 week, red... 50 3e-005
gb|CA025015.1|CA025015 HZ50P18r HZ Hordeum vulgare subsp. v... 50 3e-005
gb|BQ466496.1|BQ466496 HT02L06r HT Hordeum vulgare subsp. v... 48 1e-004
gb|BF265584.1|BF265584 HV_CEa0012L12f Hordeum vulgare seedl... 46 5e-004
gb|AL509158.1|AL509158 AL509158 Hordeum vulgare Barke devel... 40 0.033
gb|AL512237.1|AL512237 AL512237 Hordeum vulgare Barke devel... 40 0.033
gb|BF624808.3|BF624808 HVSMEa0017M20f Hordeum vulgare seedl... 40 0.033
gb|BF257083.2|BF257083 HVSMEf0011M23f Hordeum vulgare seedl... 40 0.033
gb|BM444939.1|BM444939 EBem09_SQ006_P10_R embryo, 1 Day ger... 40 0.033
gb|BM444941.1|BM444941 EBem09_SQ006_P12_R embryo, 1 Day ger... 40 0.033
gb|BQ466718.1|BQ466718 HS01F20T HS Hordeum vulgare subsp. v... 40 0.033
gb|BQ467033.1|BQ467033 HS02F20r HS Hordeum vulgare subsp. v... 40 0.033
gb|BQ470221.1|BQ470221 HX02C21r HX Hordeum vulgare subsp. v... 40 0.033
gb|BQ662436.1|BQ662436 HS02F20u HS Hordeum vulgare subsp. v... 40 0.033
gb|BQ665114.1|BQ665114 HX02C21u HX Hordeum vulgare subsp. v... 40 0.033
gb|CA025434.1|CA025434 HZ52C13r HZ Hordeum vulgare subsp. v... 40 0.033
gb|CA025727.1|CA025727 HZ52P15r HZ Hordeum vulgare subsp. v... 40 0.033
gb|CA028164.1|CA028164 HZ61C23r HZ Hordeum vulgare subsp. v... 40 0.033
gb|CA031016.1|CA031016 HX08M11r HX Hordeum vulgare subsp. v... 40 0.033
gb|CB875592.1|CB875592 HX08M11w HX Hordeum vulgare subsp. v... 40 0.033
gb|BE411223.1|BE411223 ISC003.D01F990512 ITEC ISC Barley Le... 38 0.13
gb|BE411510.1|BE411510 ISC006.D03F990629 ITEC ISC Barley Le... 38 0.13
gb|BE411918.1|BE411918 ISC010.F05F991006 ITEC ISC Barley Le... 38 0.13
gb|BF625579.2|BF625579 HVSMEa0011I20f Hordeum vulgare seedl... 38 0.13
gb|BF625247.3|BF625247 HVSMEa0008A17f Hordeum vulgare seedl... 38 0.13
gb|BF624240.3|BF624240 HVSMEa0013A03f Hordeum vulgare seedl... 38 0.13
gb|BF623118.3|BF623118 HVSMEa0014H20f Hordeum vulgare seedl... 38 0.13
gb|BF623365.3|BF623365 HVSMEa0015K06f Hordeum vulgare seedl... 38 0.13
gb|AV910417.1|AV910417 AV910417 K. Sato unpublished cDNA li... 38 0.13
gb|AV910739.1|AV910739 AV910739 K. Sato unpublished cDNA li... 38 0.13
gb|AV911566.1|AV911566 AV911566 K. Sato unpublished cDNA li... 38 0.13
gb|AV911896.1|AV911896 AV911896 K. Sato unpublished cDNA li... 38 0.13
gb|AV912435.1|AV912435 AV912435 K. Sato unpublished cDNA li... 38 0.13
gb|AV912560.1|AV912560 AV912560 K. Sato unpublished cDNA li... 38 0.13
gb|BJ448310.1|BJ448310 BJ448310 K. Sato unpublished cDNA li... 38 0.13
gb|BJ449379.1|BJ449379 BJ449379 K. Sato unpublished cDNA li... 38 0.13
gb|BJ449920.1|BJ449920 BJ449920 K. Sato unpublished cDNA li... 38 0.13
gb|BJ451266.1|BJ451266 BJ451266 K. Sato unpublished cDNA li... 38 0.13
gb|BJ452183.1|BJ452183 BJ452183 K. Sato unpublished cDNA li... 38 0.13
gb|BJ452826.1|BJ452826 BJ452826 K. Sato unpublished cDNA li... 38 0.13
gb|BJ453927.1|BJ453927 BJ453927 K. Sato unpublished cDNA li... 38 0.13
gb|BJ454380.1|BJ454380 BJ454380 K. Sato unpublished cDNA li... 38 0.13
gb|BJ454746.1|BJ454746 BJ454746 K. Sato unpublished cDNA li... 38 0.13
gb|BJ456029.1|BJ456029 BJ456029 K. Sato unpublished cDNA li... 38 0.13
gb|BJ457338.1|BJ457338 BJ457338 K. Sato unpublished cDNA li... 38 0.13
gb|BJ458763.1|BJ458763 BJ458763 K. Sato unpublished cDNA li... 38 0.13
gb|BJ459737.1|BJ459737 BJ459737 K. Sato unpublished cDNA li... 38 0.13
gb|BJ461463.1|BJ461463 BJ461463 K. Sato unpublished cDNA li... 38 0.13
gb|BJ462183.1|BJ462183 BJ462183 K. Sato unpublished cDNA li... 38 0.13
gb|BU998741.1|BU998741 HI12A12r HI Hordeum vulgare subsp. v... 38 0.13
>gb|AV909045.1|AV909045 AV909045 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11g05 5', mRNA sequence
Length = 645
Score = 123 bits (62), Expect = 3e-027
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 41 cggtgctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtgg 100
||||||| ||| | |||||| ||||||| ||||||||||| |||||||| ||||||||||
Sbjct: 8 cggtgcttcgcctagccaagnacctcgctgagaacaaccgaggcgcgcgcgtgctggtgg 67
Query: 101 tgtgctccgagatcacggncgtcacgttccgcggcccctccgagtcgcacctcgactcgc 160
| ||||| |||||||| | || || ||||||||||| |||||| ||||||||||| |
Sbjct: 68 tctgctcggagatcaccgcggtgaccttccgcggcccgcacgagtcccacctcgactcac 127
Query: 161 tcgtgggccaggcgct 176
||||||||||||||||
Sbjct: 128 tcgtgggccaggcgct 143
>gb|BJ450964.1|BJ450964 BJ450964 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32c10 5', mRNA sequence
Length = 638
Score = 111 bits (56), Expect = 1e-023
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 62 acctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncg 121
||||||| ||||||||||| |||||||| ||||||||||| ||||| |||||||| | |
Sbjct: 22 acctcgctgagaacaaccgaggcgcgcgcgtgctggtggtctgctcggagatcaccgcgg 81
Query: 122 tcacgttccgcggcccctccgagtcgcacctcgactcgctcgtgggccaggcgct 176
| || ||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct: 82 tgaccttccgcggcccgcacgagtcccacctcgactcactcgtgggccaggcgct 136
>emb|Y09233.1|HVCHS2 H.vulgare mRNA for homoeriodictyol/eriodictyol chalcone synthase
Length = 1493
Score = 83.8 bits (42), Expect = 2e-015
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| |||| |||| |||||| || ||| | ||||||||| |||| ||
Sbjct: 514 gtaccagcaggggtgcttcggcggcgccacggttcttcgccttgccaaggacatcgctga 573
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagat 113
||||||||||||||| || |||||||| || ||||| |||||
Sbjct: 574 gaacaaccgcggcgctcgtgtgctggttgtctgctcggagat 615
>gb|AW982677.3|AW982677 HVSMEg0003O15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003O15f, mRNA sequence
Length = 883
Score = 67.9 bits (34), Expect = 1e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| ||||| |||||||| ||| | ||||| ||||| || |||||||||
Sbjct: 302 cagggatgcttcgccggcgggacggtgcttcgcctagccaaagaccttgctgagaacaac 361
Query: 79 cgcggcgcgcgggtgctggtggtgtgctccgagatcac 116
|| ||||||| ||||| ||||| ||||| ||||||||
Sbjct: 362 cgatgcgcgcgcgtgctcgtggtctgctcggagatcac 399
>gb|CK124929.1|CK124929 BES1824111A1g01 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G0111 5-PRIME, mRNA sequence
Length = 526
Score = 60.0 bits (30), Expect = 4e-008
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 55 gccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatc 114
|||||||| ||||| |||||||||||||||||||| || || |||| ||||||||| ||
Sbjct: 105 gccaaggagctcgccgagaacaaccgcggcgcgcgcgtcctcgtggcctgctccgagctc 164
Query: 115 ac 116
||
Sbjct: 165 ac 166
Score = 58.0 bits (29), Expect = 1e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 178 ttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgc 237
|||||||||||||||| ||||| |||| ||||||||||| | | || |||||||||||
Sbjct: 228 ttcggcgacggcgcgggcgccgtcatcgtcggcgccgaccccgtcaacagcgtcgagcgc 287
Query: 238 ccgct 242
|||||
Sbjct: 288 ccgct 292
>gb|AV924405.1|AV924405 AV924405 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14g21 5', mRNA sequence
Length = 542
Score = 50.1 bits (25), Expect = 3e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 53 tggccaaggacctcgcggagaacaaccgcggcgcgcg 89
|||| |||||||| || ||||||||||||||||||||
Sbjct: 273 tggcaaaggaccttgccgagaacaaccgcggcgcgcg 309
Score = 46.1 bits (23), Expect = 5e-004
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 176 tgttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagc 235
||||||||||||| |||| || ||| |||| ||||||||| | | || | ||||||||
Sbjct: 405 tgttcggcgacggggcgggcgcggtgatcgtaggcgccgacaccgtggagcccgtcgagc 464
Query: 236 gcccgctcttc 246
|||||||||||
Sbjct: 465 gcccgctcttc 475
>gb|AV925136.1|AV925136 AV925136 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21m21 5', mRNA sequence
Length = 487
Score = 50.1 bits (25), Expect = 3e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 53 tggccaaggacctcgcggagaacaaccgcggcgcgcg 89
|||| |||||||| || ||||||||||||||||||||
Sbjct: 283 tggcaaaggaccttgccgagaacaaccgcggcgcgcg 319
Score = 46.1 bits (23), Expect = 5e-004
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 176 tgttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagc 235
||||||||||||| |||| || ||| |||| ||||||||| | | || | ||||||||
Sbjct: 415 tgttcggcgacggggcgggcgcggtgatcgtaggcgccgacaccgtggagcccgtcgagc 474
Query: 236 gcccgctcttc 246
|||||||||||
Sbjct: 475 gcccgctcttc 485
>gb|BI778287.2|BI778287 EBro07_SQ002_M07_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_M07 5', mRNA sequence
Length = 651
Score = 50.1 bits (25), Expect = 3e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 53 tggccaaggacctcgcggagaacaaccgcggcgcgcg 89
|||| |||||||| || ||||||||||||||||||||
Sbjct: 106 tggcaaaggaccttgccgagaacaaccgcggcgcgcg 142
Score = 46.1 bits (23), Expect = 5e-004
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 176 tgttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagc 235
||||||||||||| |||| || ||| |||| ||||||||| | | || | ||||||||
Sbjct: 238 tgttcggcgacggggcgggcgcggtgatcgtaggcgccgacaccgtggagcccgtcgagc 297
Query: 236 gcccgctcttc 246
|||||||||||
Sbjct: 298 gcccgctcttc 308
>gb|CA025015.1|CA025015 HZ50P18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50P18
5-PRIME, mRNA sequence
Length = 189
Score = 50.1 bits (25), Expect = 3e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 53 tggccaaggacctcgcggagaacaaccgcggcgcgcg 89
|||| |||||||| || ||||||||||||||||||||
Sbjct: 120 tggcaaaggaccttgccgagaacaaccgcggcgcgcg 156
>gb|BQ466496.1|BQ466496 HT02L06r HT Hordeum vulgare subsp. vulgare cDNA clone HT02L06
5-PRIME, mRNA sequence
Length = 640
Score = 48.1 bits (24), Expect = 1e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 46 ctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcg 89
|||||| | |||||||| || || ||||||||||||||||||||
Sbjct: 164 ctgcgcctagccaaggatctagccgagaacaaccgcggcgcgcg 207
>gb|BF265584.1|BF265584 HV_CEa0012L12f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012L12f, mRNA sequence
Length = 887
Score = 46.1 bits (23), Expect = 5e-004
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 55 gccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatc 114
|||| ||| ||||| |||||||||||||| ||||| || || |||| ||| ||||||||
Sbjct: 417 gccagggagctcgccgagaacaaccgcggtgcgcgcgtcctcgtggcctgcgccgagatc 476
Query: 115 acg 117
|||
Sbjct: 477 acg 479
>gb|AL509158.1|AL509158 AL509158 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10O01V 5',
mRNA sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 347 gcggccgtggtcgtgggcgc 366
>gb|AL512237.1|AL512237 AL512237 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10O01u 3',
mRNA sequence
Length = 390
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 249 gcggccgtggtcgtgggcgc 230
>gb|BF624808.3|BF624808 HVSMEa0017M20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017M20f, mRNA sequence
Length = 847
Score = 40.1 bits (20), Expect = 0.033
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 179 tcggcgacggcgcggcggccgtgg 202
|||||||||||||||| |||||||
Sbjct: 272 tcggcgacggcgcggccgccgtgg 249
>gb|BF257083.2|BF257083 HVSMEf0011M23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011M23f, mRNA sequence
Length = 585
Score = 40.1 bits (20), Expect = 0.033
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 179 tcggcgacggcgcggcggccgtgg 202
|||||||||||||||| |||||||
Sbjct: 283 tcggcgacggcgcggccgccgtgg 260
>gb|BM444939.1|BM444939 EBem09_SQ006_P10_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_P10 5', mRNA sequence
Length = 213
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 21 gcggccgtggtcgtgggcgc 40
>gb|BM444941.1|BM444941 EBem09_SQ006_P12_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_P12 5', mRNA sequence
Length = 218
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 21 gcggccgtggtcgtgggcgc 40
>gb|BQ466718.1|BQ466718 HS01F20T HS Hordeum vulgare subsp. vulgare cDNA clone HS01F20
5-PRIME, mRNA sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 342 gcggccgtggtcgtgggcgc 361
>gb|BQ467033.1|BQ467033 HS02F20r HS Hordeum vulgare subsp. vulgare cDNA clone HS02F20
5-PRIME, mRNA sequence
Length = 521
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 343 gcggccgtggtcgtgggcgc 362
>gb|BQ470221.1|BQ470221 HX02C21r HX Hordeum vulgare subsp. vulgare cDNA clone HX02C21
5-PRIME, mRNA sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 401 gcggccgtggtcgtgggcgc 420
>gb|BQ662436.1|BQ662436 HS02F20u HS Hordeum vulgare subsp. vulgare cDNA clone HS02F20
3-PRIME, mRNA sequence
Length = 585
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 242 gcggccgtggtcgtgggcgc 223
>gb|BQ665114.1|BQ665114 HX02C21u HX Hordeum vulgare subsp. vulgare cDNA clone HX02C21
3-PRIME, mRNA sequence
Length = 482
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 225 gcggccgtggtcgtgggcgc 206
>gb|CA025434.1|CA025434 HZ52C13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52C13
5-PRIME, mRNA sequence
Length = 387
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 195 gcggccgtggtcgtgggcgc 214
>gb|CA025727.1|CA025727 HZ52P15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52P15
5-PRIME, mRNA sequence
Length = 538
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 336 gcggccgtggtcgtgggcgc 355
>gb|CA028164.1|CA028164 HZ61C23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C23
5-PRIME, mRNA sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 239 gcggccgtggtcgtgggcgc 220
>gb|CA031016.1|CA031016 HX08M11r HX Hordeum vulgare subsp. vulgare cDNA clone HX08M11
5-PRIME, mRNA sequence
Length = 642
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 348 gcggccgtggtcgtgggcgc 367
>gb|CB875592.1|CB875592 HX08M11w HX Hordeum vulgare subsp. vulgare cDNA clone HX08M11
3-PRIME, mRNA sequence
Length = 639
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 193 gcggccgtggtcgtgggcgc 212
||||||||||||||||||||
Sbjct: 314 gcggccgtggtcgtgggcgc 295
>gb|BE411223.1|BE411223 ISC003.D01F990512 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC003.D01, mRNA sequence
Length = 482
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 317 ggccaaggacctcgcggag 299
>gb|BE411510.1|BE411510 ISC006.D03F990629 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC006.D03, mRNA sequence
Length = 448
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 249 ggccaaggacctcgcggag 267
>gb|BE411918.1|BE411918 ISC010.F05F991006 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC010.F05, mRNA sequence
Length = 460
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 384 ggccaaggacctcgcggag 402
>gb|BF625579.2|BF625579 HVSMEa0011I20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011I20f, mRNA sequence
Length = 644
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 369 ggccaaggacctcgcggag 387
>gb|BF625247.3|BF625247 HVSMEa0008A17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008A17f, mRNA sequence
Length = 622
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 379 ggccaaggacctcgcggag 397
>gb|BF624240.3|BF624240 HVSMEa0013A03f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0013A03f, mRNA sequence
Length = 501
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 379 ggccaaggacctcgcggag 397
>gb|BF623118.3|BF623118 HVSMEa0014H20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0014H20f, mRNA sequence
Length = 828
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 379 ggccaaggacctcgcggag 397
>gb|BF623365.3|BF623365 HVSMEa0015K06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015K06f, mRNA sequence
Length = 818
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 382 ggccaaggacctcgcggag 400
>gb|AV910417.1|AV910417 AV910417 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4h21 5', mRNA sequence
Length = 337
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 92 ggccaaggacctcgcggag 110
>gb|AV910739.1|AV910739 AV910739 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1p18 5', mRNA sequence
Length = 234
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 87 ggccaaggacctcgcggag 105
>gb|AV911566.1|AV911566 AV911566 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13j07 3', mRNA sequence
Length = 378
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 295 ggccaaggacctcgcggag 277
>gb|AV911896.1|AV911896 AV911896 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1p18 3', mRNA sequence
Length = 296
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 213 ggccaaggacctcgcggag 195
>gb|AV912435.1|AV912435 AV912435 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3p18 3', mRNA sequence
Length = 124
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 116 ggccaaggacctcgcggag 98
>gb|AV912560.1|AV912560 AV912560 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4h21 3', mRNA sequence
Length = 334
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 221 ggccaaggacctcgcggag 203
>gb|BJ448310.1|BJ448310 BJ448310 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19h05 5', mRNA sequence
Length = 582
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 379 ggccaaggacctcgcggag 397
>gb|BJ449379.1|BJ449379 BJ449379 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23l22 5', mRNA sequence
Length = 610
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 402 ggccaaggacctcgcggag 420
>gb|BJ449920.1|BJ449920 BJ449920 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27e02 5', mRNA sequence
Length = 419
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 101 ggccaaggacctcgcggag 119
>gb|BJ451266.1|BJ451266 BJ451266 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak33f09 5', mRNA sequence
Length = 486
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 391 ggccaaggacctcgcggag 409
>gb|BJ452183.1|BJ452183 BJ452183 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38b06 5', mRNA sequence
Length = 295
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 57 ggccaaggacctcgcggag 75
>gb|BJ452826.1|BJ452826 BJ452826 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak40j13 5', mRNA sequence
Length = 333
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 145 ggccaaggacctcgcggag 127
>gb|BJ453927.1|BJ453927 BJ453927 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak44p24 5', mRNA sequence
Length = 502
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 286 ggccaaggacctcgcggag 304
>gb|BJ454380.1|BJ454380 BJ454380 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24d04 5', mRNA sequence
Length = 448
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 130 ggccaaggacctcgcggag 148
>gb|BJ454746.1|BJ454746 BJ454746 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14j24 3', mRNA sequence
Length = 312
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 54 ggccaaggacctcgcggag 72
|||||||||||||||||||
Sbjct: 301 ggccaaggacctcgcggag 283
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,552
Number of Sequences: 312970
Number of extensions: 47552
Number of successful extensions: 14639
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14558
Number of HSP's gapped (non-prelim): 78
length of query: 252
length of database: 175,134,539
effective HSP length: 18
effective length of query: 234
effective length of database: 169,501,079
effective search space: 39663252486
effective search space used: 39663252486
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)