BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802485.2.1
(1118 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG344569.1|BG344569 HVSMEg0009K15f Hordeum vulgare pre-a... 174 4e-042
gb|CB875581.1|CB875581 HX08L22w HX Hordeum vulgare subsp. v... 174 4e-042
gb|CB883381.1|CB883381 HQ02B06w HQ Hordeum vulgare subsp. v... 174 4e-042
gb|CA007884.1|CA007884 HU09E15r HU Hordeum vulgare subsp. v... 168 2e-040
gb|BF256250.2|BF256250 HVSMEf0009E08f Hordeum vulgare seedl... 159 2e-037
gb|BG417572.2|BG417572 HVSMEk0018E04f Hordeum vulgare testa... 157 1e-036
gb|CA025473.1|CA025473 HZ52E08r HZ Hordeum vulgare subsp. v... 155 4e-036
gb|BG343247.2|BG343247 HVSMEg0005D12f Hordeum vulgare pre-a... 147 9e-034
gb|BF628861.3|BF628861 HVSMEb0008P22f Hordeum vulgare seedl... 58 7e-007
gb|AV910614.1|AV910614 AV910614 K. Sato unpublished cDNA li... 40 0.15
gb|AV928674.1|AV928674 AV928674 K. Sato unpublished cDNA li... 40 0.15
gb|AV928682.1|AV928682 AV928682 K. Sato unpublished cDNA li... 40 0.15
gb|AV929650.1|AV929650 AV929650 K. Sato unpublished cDNA li... 40 0.15
gb|AV929651.1|AV929651 AV929651 K. Sato unpublished cDNA li... 40 0.15
gb|AV931210.1|AV931210 AV931210 K. Sato unpublished cDNA li... 40 0.15
gb|BJ447030.1|BJ447030 BJ447030 K. Sato unpublished cDNA li... 40 0.15
gb|BJ447663.1|BJ447663 BJ447663 K. Sato unpublished cDNA li... 40 0.15
gb|BJ448164.1|BJ448164 BJ448164 K. Sato unpublished cDNA li... 40 0.15
gb|BJ448613.1|BJ448613 BJ448613 K. Sato unpublished cDNA li... 40 0.15
gb|BJ451203.1|BJ451203 BJ451203 K. Sato unpublished cDNA li... 40 0.15
gb|BJ455032.1|BJ455032 BJ455032 K. Sato unpublished cDNA li... 40 0.15
gb|BJ455414.1|BJ455414 BJ455414 K. Sato unpublished cDNA li... 40 0.15
gb|BJ455886.1|BJ455886 BJ455886 K. Sato unpublished cDNA li... 40 0.15
gb|BJ456333.1|BJ456333 BJ456333 K. Sato unpublished cDNA li... 40 0.15
gb|BJ457446.1|BJ457446 BJ457446 K. Sato unpublished cDNA li... 40 0.15
gb|BJ458700.1|BJ458700 BJ458700 K. Sato unpublished cDNA li... 40 0.15
>gb|BG344569.1|BG344569 HVSMEg0009K15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009K15f, mRNA sequence
Length = 815
Score = 174 bits (88), Expect = 4e-042
Identities = 133/148 (89%)
Strand = Plus / Plus
Query: 411 tgggaaacaataaatatctgggacaggaaaagcttcccatcattgtctgggttattgctc 470
|||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||
Sbjct: 22 tggggaacagtaaatatcttggacaggaaaagcttcccatcattgcctgggttattaatc 81
Query: 471 aggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttccca 530
|||| |||||||| |||||||| || || |||||||||||| ||||||| ||||||||||
Sbjct: 82 aggcatctcaaggcgacctagtctcgggaatgttttgctggtctcattccctatttccca 141
Query: 531 cattatgtgcgaagtcaagtgggaatcc 558
|| ||||||| |||||||||||||||||
Sbjct: 142 cagtatgtgcaaagtcaagtgggaatcc 169
Score = 155 bits (78), Expect = 4e-036
Identities = 159/186 (85%)
Strand = Plus / Plus
Query: 697 cacatttcctgtttctaatgctcgagtgaaggctacagaaaggtttgaagcagcctaccc 756
|||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 317 cacatttcctgtgcctaatgcacgtgtcaaggctacagaaaggtttgaagcagcctaccc 376
Query: 757 aatgatcaaggagttggctcttgccggtcctcctggctcaaaaactgtgaaacaagcatc 816
|| || |||||| ||||||||| ||| |||||||||| ||| ||||||| ||||||||
Sbjct: 377 tataataaaggagctggctcttgttggtactcctggctctaaagctgtgaagcaagcatc 436
Query: 817 acaacagcttttacctttgtgtgcaaaagcaatgcaagaaaacaacgcagagctcaccag 876
||| |||||| | |||||| || || |||||||||||||| || ||||||||| |||
Sbjct: 437 acagcagcttctgcctttggctgtgaaggcaatgcaagaaaataatgcagagctcgccaa 496
Query: 877 ggaggc 882
||||||
Sbjct: 497 ggaggc 502
>gb|CB875581.1|CB875581 HX08L22w HX Hordeum vulgare subsp. vulgare cDNA clone HX08L22
3-PRIME, mRNA sequence
Length = 698
Score = 174 bits (88), Expect = 4e-042
Identities = 133/148 (89%)
Strand = Plus / Plus
Query: 411 tgggaaacaataaatatctgggacaggaaaagcttcccatcattgtctgggttattgctc 470
|||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||
Sbjct: 69 tggggaacagtaaatatcttggacaggaaaagcttcccatcattgcctgggttattaatc 128
Query: 471 aggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttccca 530
|||| |||||||| |||||||| || || |||||||||||| ||||||| ||||||||||
Sbjct: 129 aggcatctcaaggcgacctagtctcgggaatgttttgctggtctcattccctatttccca 188
Query: 531 cattatgtgcgaagtcaagtgggaatcc 558
|| ||||||| |||||||||||||||||
Sbjct: 189 cagtatgtgcaaagtcaagtgggaatcc 216
Score = 155 bits (78), Expect = 4e-036
Identities = 159/186 (85%)
Strand = Plus / Plus
Query: 697 cacatttcctgtttctaatgctcgagtgaaggctacagaaaggtttgaagcagcctaccc 756
|||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 364 cacatttcctgtgcctaatgcacgtgtcaaggctacagaaaggtttgaagcagcctaccc 423
Query: 757 aatgatcaaggagttggctcttgccggtcctcctggctcaaaaactgtgaaacaagcatc 816
|| || |||||| ||||||||| ||| |||||||||| ||| ||||||| ||||||||
Sbjct: 424 tataataaaggagctggctcttgttggtactcctggctctaaagctgtgaagcaagcatc 483
Query: 817 acaacagcttttacctttgtgtgcaaaagcaatgcaagaaaacaacgcagagctcaccag 876
||| |||||| | |||||| || || |||||||||||||| || ||||||||| |||
Sbjct: 484 acagcagcttctgcctttggctgtgaaggcaatgcaagaaaataatgcagagctcgccaa 543
Query: 877 ggaggc 882
||||||
Sbjct: 544 ggaggc 549
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 347 gttgttcttgccatgactttaagaagaaagcctgatgta 385
||||| |||||| ||||||||||||| ||||| ||||||
Sbjct: 5 gttgtgcttgccttgactttaagaaggaagccagatgta 43
>gb|CB883381.1|CB883381 HQ02B06w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02B06
3-PRIME, mRNA sequence
Length = 578
Score = 174 bits (88), Expect = 4e-042
Identities = 180/211 (85%), Gaps = 6/211 (2%)
Strand = Plus / Plus
Query: 181 caagactgcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgtttt 240
||||||||| |||||||||||||| || |||||| ||||||| ||||||| ||||||||
Sbjct: 295 caagactgcaagtgattggatcagccagagatctcctgatgcattgggagagtttgtttt 354
Query: 241 gtggtgtatagatagcatcatgtctgaattgtcaggtccatc------agctggccctaa 294
|||||||||||||||||||||||| ||||||||||||||| | | |||| |||||
Sbjct: 355 gtggtgtatagatagcatcatgtcggaattgtcaggtccaactgttggacctggacctaa 414
Query: 295 gggttcaaagaaggttgcacaacagtctccaagggcccaggttgcaatctttgttgttct 354
||| || |||||||||| ||||| |||||| |||||||||||||| || ||||| ||
Sbjct: 415 gggctcgaagaaggttgttcaacaaactccaaaagcccaggttgcaatattcgttgtgct 474
Query: 355 tgccatgactttaagaagaaagcctgatgta 385
|||| ||||||||||||| ||||| ||||||
Sbjct: 475 tgccttgactttaagaaggaagccagatgta 505
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 411 tgggaaacaataaatatctgggacaggaaaagcttcccatcattg 455
|||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct: 531 tggggaacagtaaatatcttggacaggaaaagcttcccatcattg 575
>gb|CA007884.1|CA007884 HU09E15r HU Hordeum vulgare subsp. vulgare cDNA clone HU09E15
5-PRIME, mRNA sequence
Length = 595
Score = 168 bits (85), Expect = 2e-040
Identities = 199/237 (83%)
Strand = Plus / Plus
Query: 697 cacatttcctgtttctaatgctcgagtgaaggctacagaaaggtttgaagcagcctaccc 756
||||||||| || ||||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 254 cacatttcccgtgcctaatgcacgtgtcaaggctacagaaaggtttgaagcagcctaccc 313
Query: 757 aatgatcaaggagttggctcttgccggtcctcctggctcaaaaactgtgaaacaagcatc 816
||| || |||||| ||||||||| ||| |||||||||| ||| ||||||| ||||||||
Sbjct: 314 aataataaaggagctggctcttgttggtactcctggctctaaagctgtgaagcaagcatc 373
Query: 817 acaacagcttttacctttgtgtgcaaaagcaatgcaagaaaacaacgcagagctcaccag 876
||| |||||| | |||||| || || |||||||||||||| || ||||||||| |||
Sbjct: 374 acagcagcttctgcctttggctgtgaaggcaatgcaagaaaataatgcagagctcgccaa 433
Query: 877 ggaggctgttgatgttttcatttggtgcttaactcaaaatgcagagtcgtacaagca 933
|||||| |||||| ||||| |||||| | ||||| | | ||||||| ||||||||
Sbjct: 434 ggaggccactgatgtgttcatctggtgcctgactcagagtccagagtcctacaagca 490
Score = 103 bits (52), Expect = 1e-020
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 469 tcaggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttcc 528
|||||| ||||||||||||||||| || || |||||||||||| ||||| ||||||||
Sbjct: 17 tcaggcatctcaaggtgacctagtctcgggaatgttttgctggtgacattccctatttcc 76
Query: 529 cacattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgcagttgct 588
|||| ||||||| |||||| |||||||||||| |||||||| | || ||||| |||||
Sbjct: 77 cacagtatgtgcaaagtcaggtgggaatccccagtcaagagatctcgtcttgcaattgct 136
Query: 589 tgaaagaattttgtct 604
||| || ||||||||
Sbjct: 137 tgagaggtttttgtct 152
>gb|BF256250.2|BF256250 HVSMEf0009E08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009E08f, mRNA sequence
Length = 768
Score = 159 bits (80), Expect = 2e-037
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 431 ggacaggaaaagcttcccatcattgtctgggttattgctcaggcctctcaaggtgaccta 490
||||||||||||||||||||||||| |||||||||| |||||| |||||||| ||||||
Sbjct: 4 ggacaggaaaagcttcccatcattgcctgggttattaatcaggcatctcaaggcgaccta 63
Query: 491 gtgtctggcatgttttgctgggctcattctctatttcccacattatgtgcgaagtcaagt 550
|| || || |||||||||||| ||||||| |||||||||||| ||||||| |||||||||
Sbjct: 64 gtctcgggaatgttttgctggtctcattccctatttcccacagtatgtgcaaagtcaagt 123
Query: 551 gggaatcc 558
||||||||
Sbjct: 124 gggaatcc 131
Score = 155 bits (78), Expect = 4e-036
Identities = 159/186 (85%)
Strand = Plus / Plus
Query: 697 cacatttcctgtttctaatgctcgagtgaaggctacagaaaggtttgaagcagcctaccc 756
|||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 279 cacatttcctgtgcctaatgcacgtgtcaaggctacagaaaggtttgaagcagcctaccc 338
Query: 757 aatgatcaaggagttggctcttgccggtcctcctggctcaaaaactgtgaaacaagcatc 816
|| || |||||| ||||||||| ||| |||||||||| ||| ||||||| ||||||||
Sbjct: 339 tataataaaggagctggctcttgttggtactcctggctctaaagctgtgaagcaagcatc 398
Query: 817 acaacagcttttacctttgtgtgcaaaagcaatgcaagaaaacaacgcagagctcaccag 876
||| |||||| | |||||| || || |||||||||||||| || ||||||||| |||
Sbjct: 399 acagcagcttctgcctttggctgtgaaggcaatgcaagaaaataatgcagagctcgccaa 458
Query: 877 ggaggc 882
||||||
Sbjct: 459 ggaggc 464
>gb|BG417572.2|BG417572 HVSMEk0018E04f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0018E04f, mRNA sequence
Length = 697
Score = 157 bits (79), Expect = 1e-036
Identities = 187/223 (83%)
Strand = Plus / Plus
Query: 711 ctaatgctcgagtgaaggctacagaaaggtttgaagcagcctacccaatgatcaaggagt 770
||||||| || || |||||||||| |||||||||||||||||||||||| || |||||||
Sbjct: 5 ctaatgcacgtgtcaaggctacagtaaggtttgaagcagcctacccaataataaaggagt 64
Query: 771 tggctcttgccggtcctcctggctcaaaaactgtgaaacaagcatcacaacagcttttac 830
||||||||| ||| ||| |||||| ||| ||||||| |||||||||||||||||| | |
Sbjct: 65 tggctcttgttggtactcttggctctaaagctgtgaagcaagcatcacaacagcttctgc 124
Query: 831 ctttgtgtgcaaaagcaatgcaagaaaacaacgcagagctcaccagggaggctgttgatg 890
||||| || || |||||||||||||| || ||||||||| ||| |||||| |||||
Sbjct: 125 ctttggctgtgaaggcaatgcaagaaaataatgcagagctcgccaaggaggccactgatg 184
Query: 891 ttttcatttggtgcttaactcaaaatgcagagtcgtacaagca 933
| ||||| |||||| | ||||| | | |||| || ||||||||
Sbjct: 185 tgttcatctggtgcctgactcagagtccagactcctacaagca 227
>gb|CA025473.1|CA025473 HZ52E08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52E08
5-PRIME, mRNA sequence
Length = 433
Score = 155 bits (78), Expect = 4e-036
Identities = 159/186 (85%)
Strand = Plus / Plus
Query: 697 cacatttcctgtttctaatgctcgagtgaaggctacagaaaggtttgaagcagcctaccc 756
|||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 39 cacatttcctgtgcctaatgcacgtgtcaaggctacagaaaggtttgaagcagcctaccc 98
Query: 757 aatgatcaaggagttggctcttgccggtcctcctggctcaaaaactgtgaaacaagcatc 816
|| || |||||| ||||||||| ||| |||||||||| ||| ||||||| ||||||||
Sbjct: 99 tataataaaggagctggctcttgttggtactcctggctctaaagctgtgaagcaagcatc 158
Query: 817 acaacagcttttacctttgtgtgcaaaagcaatgcaagaaaacaacgcagagctcaccag 876
||| |||||| | |||||| || || |||||||||||||| || ||||||||| |||
Sbjct: 159 acagcagcttctgcctttggctgtgaaggcaatgcaagaaaataatgcagagctcgccaa 218
Query: 877 ggaggc 882
||||||
Sbjct: 219 ggaggc 224
>gb|BG343247.2|BG343247 HVSMEg0005D12f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005D12f, mRNA sequence
Length = 974
Score = 147 bits (74), Expect = 9e-034
Identities = 158/186 (84%)
Strand = Plus / Plus
Query: 697 cacatttcctgtttctaatgctcgagtgaaggctacagaaaggtttgaagcagcctaccc 756
||||||||| || ||||||| || || |||||||||| |||||||||||||||||||||
Sbjct: 425 cacatttcccgtgcctaatgcacgtgtcaaggctacagtaaggtttgaagcagcctaccc 484
Query: 757 aatgatcaaggagttggctcttgccggtcctcctggctcaaaaactgtgaaacaagcatc 816
||| || |||||||||||||||| ||| ||| |||||| ||| ||||||| ||||||||
Sbjct: 485 aataataaaggagttggctcttgttggtactcttggctctaaagctgtgaagcaagcatc 544
Query: 817 acaacagcttttacctttgtgtgcaaaagcaatgcaagaaaacaacgcagagctcaccag 876
|||||||||| | |||||| || || |||||||||||||| || ||| ||||| |||
Sbjct: 545 acaacagcttctgcctttggctgtgaacgcaatgcaagaaaataatgcatagctcgccaa 604
Query: 877 ggaggc 882
||||||
Sbjct: 605 ggaggc 610
>gb|BF628861.3|BF628861 HVSMEb0008P22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008P22f, mRNA sequence
Length = 754
Score = 58.0 bits (29), Expect = 7e-007
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 697 cacatttcctgtttctaatgctcgagtgaaggctacagaaaggtttgaagcagcctaccc 756
||||||||| || ||||||| || || ||||||||| || ||||||||||||||||||
Sbjct: 622 cacatttcccgtgcctaatgcacgtgtcaaggctacaataaagtttgaagcagcctaccc 681
Query: 757 aatgatcaaggag 769
||| || ||||||
Sbjct: 682 aataataaaggag 694
>gb|AV910614.1|AV910614 AV910614 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1b19 5', mRNA sequence
Length = 340
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 303 tgtgcaaaagcaatgcaaga 322
>gb|AV928674.1|AV928674 AV928674 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd15e10 3', mRNA sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 22 tgtgcaaaagcaatgcaaga 3
>gb|AV928682.1|AV928682 AV928682 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd15e21 3', mRNA sequence
Length = 333
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 20 tgtgcaaaagcaatgcaaga 1
>gb|AV929650.1|AV929650 AV929650 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16a05 3', mRNA sequence
Length = 562
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 48 tgtgcaaaagcaatgcaaga 29
>gb|AV929651.1|AV929651 AV929651 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16a06 3', mRNA sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 49 tgtgcaaaagcaatgcaaga 30
>gb|AV931210.1|AV931210 AV931210 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18p04 3', mRNA sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 28 tgtgcaaaagcaatgcaaga 9
>gb|BJ447030.1|BJ447030 BJ447030 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15m06 5', mRNA sequence
Length = 584
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 474 tgtgcaaaagcaatgcaaga 493
>gb|BJ447663.1|BJ447663 BJ447663 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16m09 5', mRNA sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 513 tgtgcaaaagcaatgcaaga 532
>gb|BJ448164.1|BJ448164 BJ448164 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak18n03 5', mRNA sequence
Length = 429
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 374 tgtgcaaaagcaatgcaaga 393
>gb|BJ448613.1|BJ448613 BJ448613 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20j15 5', mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 498 tgtgcaaaagcaatgcaaga 517
>gb|BJ451203.1|BJ451203 BJ451203 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak33b22 5', mRNA sequence
Length = 446
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 396 tgtgcaaaagcaatgcaaga 415
>gb|BJ455032.1|BJ455032 BJ455032 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15m06 3', mRNA sequence
Length = 423
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 77 tgtgcaaaagcaatgcaaga 58
>gb|BJ455414.1|BJ455414 BJ455414 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16m09 3', mRNA sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 97 tgtgcaaaagcaatgcaaga 78
>gb|BJ455886.1|BJ455886 BJ455886 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak18n03 3', mRNA sequence
Length = 384
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 23 tgtgcaaaagcaatgcaaga 4
>gb|BJ456333.1|BJ456333 BJ456333 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20j15 3', mRNA sequence
Length = 517
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 21 tgtgcaaaagcaatgcaaga 2
>gb|BJ457446.1|BJ457446 BJ457446 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27l19 3', mRNA sequence
Length = 410
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 52 tgtgcaaaagcaatgcaaga 33
>gb|BJ458700.1|BJ458700 BJ458700 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak33b22 3', mRNA sequence
Length = 425
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 836 tgtgcaaaagcaatgcaaga 855
||||||||||||||||||||
Sbjct: 31 tgtgcaaaagcaatgcaaga 12
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,396
Number of Sequences: 312970
Number of extensions: 86396
Number of successful extensions: 25754
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25714
Number of HSP's gapped (non-prelim): 39
length of query: 1118
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1099
effective length of database: 169,188,109
effective search space: 185937731791
effective search space used: 185937731791
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)