BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802264.2.1
(1189 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG369061.1|BG369061 HVSMEi0021J08f Hordeum vulgare 20 DA... 78 7e-013
gb|BQ468597.1|BQ468597 HM01L12T HM Hordeum vulgare subsp. v... 78 7e-013
gb|BQ755502.1|BQ755502 EBed07_SQ002_E24_R endosperm, 28 DPA... 78 7e-013
gb|BU970579.1|BU970579 HB15B05r BC Hordeum vulgare subsp. v... 78 7e-013
gb|BU995458.1|BU995458 HM10F02r HM Hordeum vulgare subsp. v... 78 7e-013
gb|CB881603.1|CB881603 HM10F02w HM Hordeum vulgare subsp. v... 78 7e-013
gb|BQ766009.1|BQ766009 EBro03_SQ008_D24_R root, 3 week, wat... 64 1e-008
gb|BI960651.1|BI960651 HVSMEn0025K02f Hordeum vulgare rachi... 56 3e-006
gb|CA016043.1|CA016043 HV10N02u HV Hordeum vulgare subsp. v... 50 2e-004
gb|CA019511.1|CA019511 HV12D10r HV Hordeum vulgare subsp. v... 50 2e-004
gb|BF256248.3|BF256248 HVSMEf0009E04f Hordeum vulgare seedl... 48 7e-004
gb|AJ434494.1|AJ434494 AJ434494 S00002 Hordeum vulgare subs... 48 7e-004
gb|BQ767669.1|BQ767669 EBro08_SQ009_D16_R root, 3 week, dro... 48 7e-004
gb|BQ768070.1|BQ768070 EBro08_SQ010_I18_R root, 3 week, dro... 48 7e-004
gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, dro... 48 7e-004
gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. v... 48 7e-004
gb|CA024900.1|CA024900 HZ50K09r HZ Hordeum vulgare subsp. v... 48 7e-004
gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. v... 48 7e-004
gb|CK125396.1|CK125396 BES1824107o06 BES1824 Hordeum vulgar... 48 7e-004
gb|CK125855.1|CK125855 BES1824111A1d11 BES1824 Hordeum vulg... 48 7e-004
gb|BF627844.2|BF627844 HVSMEb0005P07f Hordeum vulgare seedl... 44 0.010
gb|AJ434749.1|AJ434749 AJ434749 S00002 Hordeum vulgare subs... 44 0.010
gb|BQ460303.1|BQ460303 HA06K13r HA Hordeum vulgare subsp. v... 44 0.010
gb|BI778632.2|BI778632 EBro07_SQ003_N19_R root, 3 week, red... 44 0.010
gb|BU984063.1|BU984063 HA31O02r HA Hordeum vulgare subsp. v... 44 0.010
gb|CK122715.1|CK122715 BES1824105i22 BES1824 Hordeum vulgar... 44 0.010
gb|CK123273.1|CK123273 BES1824103c09 BES1824 Hordeum vulgar... 44 0.010
gb|CK125333.1|CK125333 BES1824107l12 BES1824 Hordeum vulgar... 44 0.010
gb|CK125884.1|CK125884 BES1824111A2a04 BES1824 Hordeum vulg... 44 0.010
gb|BI956240.1|BI956240 HVSMEn0001G16f Hordeum vulgare rachi... 42 0.041
gb|BJ464625.1|BJ464625 BJ464625 K. Sato unpublished cDNA li... 42 0.041
gb|BQ470997.1|BQ470997 HX04K17r HX Hordeum vulgare subsp. v... 42 0.041
>gb|BG369061.1|BG369061 HVSMEi0021J08f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021J08f, mRNA sequence
Length = 797
Score = 77.8 bits (39), Expect = 7e-013
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 762 gcccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 407 gcccaaccccaacgtgctcaccggcgccatcgtcggcgggccc 449
>gb|BQ468597.1|BQ468597 HM01L12T HM Hordeum vulgare subsp. vulgare cDNA clone HM01L12
5-PRIME, mRNA sequence
Length = 519
Score = 77.8 bits (39), Expect = 7e-013
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 762 gcccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 70 gcccaaccccaacgtgctcaccggcgccatcgtcggcgggccc 112
>gb|BQ755502.1|BQ755502 EBed07_SQ002_E24_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ002_E24 5', mRNA sequence
Length = 397
Score = 77.8 bits (39), Expect = 7e-013
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 762 gcccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 217 gcccaaccccaacgtgctcaccggcgccatcgtcggcgggccc 259
>gb|BU970579.1|BU970579 HB15B05r BC Hordeum vulgare subsp. vulgare cDNA clone HB15B05
5-PRIME, mRNA sequence
Length = 460
Score = 77.8 bits (39), Expect = 7e-013
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 762 gcccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 111 gcccaaccccaacgtgctcaccggcgccatcgtcggcgggccc 153
>gb|BU995458.1|BU995458 HM10F02r HM Hordeum vulgare subsp. vulgare cDNA clone HM10F02
5-PRIME, mRNA sequence
Length = 628
Score = 77.8 bits (39), Expect = 7e-013
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 762 gcccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 411 gcccaaccccaacgtgctcaccggcgccatcgtcggcgggccc 453
>gb|CB881603.1|CB881603 HM10F02w HM Hordeum vulgare subsp. vulgare cDNA clone HM10F02
3-PRIME, mRNA sequence
Length = 554
Score = 77.8 bits (39), Expect = 7e-013
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 762 gcccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 455 gcccaaccccaacgtgctcaccggcgccatcgtcggcgggccc 413
>gb|BQ766009.1|BQ766009 EBro03_SQ008_D24_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_D24 5', mRNA sequence
Length = 613
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggcccgac 807
|||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 492 ccaaccccaacgtgctcgtcggcgccatcgtcggcgggcccgac 535
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 465 gcagtacgtgaccagcacggcgttcctgct 494
|||||||||||||| | |||||||||||||
Sbjct: 184 gcagtacgtgaccaacgcggcgttcctgct 213
>gb|BI960651.1|BI960651 HVSMEn0025K02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025K02f, mRNA sequence
Length = 632
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggcccgac 807
|||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 418 ccaaccccaacgtgctcgtgggcgccatcgtcggcgggcccgac 461
Score = 44.1 bits (22), Expect = 0.010
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 465 gcagtacgtgaccagcacggcgttcctgct 494
|||||||||||||| | |||||||||||||
Sbjct: 110 gcagtacgtgaccaacgcggcgttcctgct 139
>gb|CA016043.1|CA016043 HV10N02u HV Hordeum vulgare subsp. vulgare cDNA clone HV10N02
3-PRIME, mRNA sequence
Length = 460
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 783 cggcgccatcgtcggcgggcccgac 807
|||||||||||||||||||||||||
Sbjct: 439 cggcgccatcgtcggcgggcccgac 415
>gb|CA019511.1|CA019511 HV12D10r HV Hordeum vulgare subsp. vulgare cDNA clone HV12D10
5-PRIME, mRNA sequence
Length = 480
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgac 807
|||||||||||||||||||||||||
Sbjct: 317 cggcgccatcgtcggcgggcccgac 341
>gb|BF256248.3|BF256248 HVSMEf0009E04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009E04f, mRNA sequence
Length = 550
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 777 gctcaccggcgccatcgtcggcgggcccgacaagaacgac 816
|||||| |||||||| |||||||| || ||||||||||||
Sbjct: 26 gctcacgggcgccatggtcggcggcccggacaagaacgac 65
>gb|AJ434494.1|AJ434494 AJ434494 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200012H05F1, mRNA sequence
Length = 477
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 777 gctcaccggcgccatcgtcggcgggcccgacaagaacgac 816
|||||| |||||||| |||||||| || ||||||||||||
Sbjct: 67 gctcacgggcgccatggtcggcggcccggacaagaacgac 106
>gb|BQ767669.1|BQ767669 EBro08_SQ009_D16_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_D16 5', mRNA sequence
Length = 422
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 269 ccgagttcagctgggacctcaagttccccggc 300
||||||||||||||||| |||||| |||||||
Sbjct: 47 ccgagttcagctgggacatcaagtaccccggc 78
>gb|BQ768070.1|BQ768070 EBro08_SQ010_I18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_I18 5', mRNA sequence
Length = 430
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 269 ccgagttcagctgggacctcaagttccccggc 300
||||||||||||||||| |||||| |||||||
Sbjct: 393 ccgagttcagctgggacatcaagtaccccggc 424
>gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F07 5', mRNA sequence
Length = 408
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 777 gctcaccggcgccatcgtcggcgggcccgacaagaacgac 816
|||||| |||||||| |||||||| || ||||||||||||
Sbjct: 275 gctcacgggcgccatggtcggcggcccggacaagaacgac 314
>gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. vulgare cDNA clone HM08M21
5-PRIME, mRNA sequence
Length = 537
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 777 gctcaccggcgccatcgtcggcgggcccgacaagaacgac 816
|||||| |||||||| |||||||| || ||||||||||||
Sbjct: 325 gctcacgggcgccatggtcggcggcccggacaagaacgac 364
>gb|CA024900.1|CA024900 HZ50K09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50K09
5-PRIME, mRNA sequence
Length = 509
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 777 gctcaccggcgccatcgtcggcgggcccgacaagaacgac 816
|||||| |||||||| |||||||| || ||||||||||||
Sbjct: 78 gctcacgggcgccatggtcggcggcccggacaagaacgac 117
>gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. vulgare cDNA clone HI09M02
3-PRIME, mRNA sequence
Length = 649
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 777 gctcaccggcgccatcgtcggcgggcccgacaagaacgac 816
|||||| |||||||| |||||||| || ||||||||||||
Sbjct: 499 gctcacgggcgccatggtcggcggcccggacaagaacgac 460
>gb|CK125396.1|CK125396 BES1824107o06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010O067 5-PRIME, mRNA sequence
Length = 745
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 273 gttcagctgggacctcaagttccccggcgcgcaggt 308
||||||||||||| |||||| |||||||| ||||||
Sbjct: 145 gttcagctgggacatcaagtaccccggcgtgcaggt 180
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 166 tacaacgacgagctgctgtgggccgcgacctggctgtacctggcgac 212
|||| |||||||||||||||||| ||| | ||||||| || ||||||
Sbjct: 24 tacagcgacgagctgctgtgggcggcggcgtggctgttccaggcgac 70
>gb|CK125855.1|CK125855 BES1824111A1d11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D1111 5-PRIME, mRNA sequence
Length = 417
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 273 gttcagctgggacctcaagttccccggcgcgcaggt 308
||||||||||||| |||||| |||||||| ||||||
Sbjct: 242 gttcagctgggacatcaagtaccccggcgtgcaggt 277
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 166 tacaacgacgagctgctgtgggccgcgacctggctgtacctggcgac 212
|||| |||||||||||||||||| ||| | ||||||| || ||||||
Sbjct: 120 tacagcgacgagctgctgtgggcggcggcgtggctgttccaggcgac 166
>gb|BF627844.2|BF627844 HVSMEb0005P07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005P07f, mRNA sequence
Length = 782
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 783 cggcgccatcgtcggcgggccc 804
||||||||||||||||||||||
Sbjct: 462 cggcgccatcgtcggcgggccc 441
>gb|AJ434749.1|AJ434749 AJ434749 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200032F12F1, mRNA sequence
Length = 501
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 786 cgccatcgtcggcgggcccgac 807
||||||||||||||||||||||
Sbjct: 4 cgccatcgtcggcgggcccgac 25
>gb|BQ460303.1|BQ460303 HA06K13r HA Hordeum vulgare subsp. vulgare cDNA clone HA06K13
5-PRIME, mRNA sequence
Length = 581
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||||||||||||||| ||| || |||||
Sbjct: 228 cggcgccatcgtcggcgggccggacgagtacgac 261
>gb|BI778632.2|BI778632 EBro07_SQ003_N19_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_N19 5', mRNA sequence
Length = 600
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 166 tacaacgacgagctgctgtgggccgc 191
||||| ||||||||||||||||||||
Sbjct: 375 tacaaggacgagctgctgtgggccgc 400
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 269 ccgagttcagctgggacctcaagttccccggcg 301
||||||||||||||||| |||||| | ||||||
Sbjct: 493 ccgagttcagctgggacgtcaagtacgccggcg 525
>gb|BU984063.1|BU984063 HA31O02r HA Hordeum vulgare subsp. vulgare cDNA clone HA31O02
5-PRIME, mRNA sequence
Length = 477
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||||||||||||||| ||| || |||||
Sbjct: 185 cggcgccatcgtcggcgggccggacgagtacgac 218
>gb|CK122715.1|CK122715 BES1824105i22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I225 5-PRIME, mRNA sequence
Length = 776
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||||||||||||||| ||| || |||||
Sbjct: 259 cggcgccatcgtcggcgggccggacgagtacgac 292
>gb|CK123273.1|CK123273 BES1824103c09 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C093 5-PRIME, mRNA sequence
Length = 594
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||||||||||||||| ||| || |||||
Sbjct: 316 cggcgccatcgtcggcgggccggacgagtacgac 349
>gb|CK125333.1|CK125333 BES1824107l12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L127 5-PRIME, mRNA sequence
Length = 858
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||||||||||||||| ||| || |||||
Sbjct: 35 cggcgccatcgtcggcgggccggacgagtacgac 68
>gb|CK125884.1|CK125884 BES1824111A2a04 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A0411 5-PRIME, mRNA sequence
Length = 748
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||||||||||||||| ||| || |||||
Sbjct: 445 cggcgccatcgtcggcgggccggacgagtacgac 478
>gb|BI956240.1|BI956240 HVSMEn0001G16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001G16f, mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 269 ccgagttcagctgggacctcaagttccccggcg 301
||||||||||||||||| |||||| | ||||||
Sbjct: 337 ccgagttcagctgggacgtcaagtacgccggcg 369
>gb|BJ464625.1|BJ464625 BJ464625 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35i04 5', mRNA sequence
Length = 385
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 cgtccatggtgttccgcgacg 52
|||||||||||||||||||||
Sbjct: 15 cgtccatggtgttccgcgacg 35
>gb|BQ470997.1|BQ470997 HX04K17r HX Hordeum vulgare subsp. vulgare cDNA clone HX04K17
5-PRIME, mRNA sequence
Length = 627
Score = 42.1 bits (21), Expect = 0.041
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 139 tgccccttctactgctcctactcgggctacaacgacgagctgctgtggg 187
||||||| |||||| |||||||| || ||| | ||||||||||| ||||
Sbjct: 229 tgcccctactactgttcctactccggataccaggacgagctgctatggg 277
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 175,090
Number of Sequences: 312970
Number of extensions: 175090
Number of successful extensions: 52213
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52144
Number of HSP's gapped (non-prelim): 69
length of query: 1189
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1170
effective length of database: 169,188,109
effective search space: 197950087530
effective search space used: 197950087530
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)