BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3754578.2.1
         (725 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV915078.1|AV915078  AV915078 K. Sato unpublished cDNA li...   107   5e-022
gb|AV915881.1|AV915881  AV915881 K. Sato unpublished cDNA li...   107   5e-022
gb|AV920212.1|AV920212  AV920212 K. Sato unpublished cDNA li...   107   5e-022
gb|CB878649.1|CB878649  HP09F01T HP Hordeum vulgare subsp. v...    62   3e-008
gb|AV920993.1|AV920993  AV920993 K. Sato unpublished cDNA li...    54   7e-006

>gb|AV915078.1|AV915078 AV915078 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags9m07 5', mRNA sequence
          Length = 623

 Score =  107 bits (54), Expect = 5e-022
 Identities = 75/82 (91%)
 Strand = Plus / Minus

                                                                       
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
           |||||||||||||||||| ||||| ||||| |||||| ||||||| |||| ||| |||||
Sbjct: 236 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgta 177

                                 
Query: 634 ctggcagaacttccagctgtgg 655
           ||||||||||||||||||||||
Sbjct: 176 ctggcagaacttccagctgtgg 155



>gb|AV915881.1|AV915881 AV915881 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags16g24 5', mRNA sequence
          Length = 606

 Score =  107 bits (54), Expect = 5e-022
 Identities = 75/82 (91%)
 Strand = Plus / Minus

                                                                       
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
           |||||||||||||||||| ||||| ||||| |||||| ||||||| |||| ||| |||||
Sbjct: 233 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgta 174

                                 
Query: 634 ctggcagaacttccagctgtgg 655
           ||||||||||||||||||||||
Sbjct: 173 ctggcagaacttccagctgtgg 152



>gb|AV920212.1|AV920212 AV920212 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags9m07 3', mRNA sequence
          Length = 671

 Score =  107 bits (54), Expect = 5e-022
 Identities = 75/82 (91%)
 Strand = Plus / Plus

                                                                       
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
           |||||||||||||||||| ||||| ||||| |||||| ||||||| |||| ||| |||||
Sbjct: 572 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgta 631

                                 
Query: 634 ctggcagaacttccagctgtgg 655
           ||||||||||||||||||||||
Sbjct: 632 ctggcagaacttccagctgtgg 653



>gb|CB878649.1|CB878649 HP09F01T HP Hordeum vulgare subsp. vulgare cDNA clone HP09F01
           5-PRIME, mRNA sequence
          Length = 196

 Score = 61.9 bits (31), Expect = 3e-008
 Identities = 72/83 (86%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                       
Query: 574 gcacagcatctgcctgggtgact-gatagtgggccgtgtagtagttctccaggcaaccgt 632
           |||||||||||||||||| |||| | ||||| |||||| ||||||| ||||  || ||||
Sbjct: 107 gcacagcatctgcctgggggactgggtagtgcgccgtgaagtagttgtccacccagccgt 48

                                  
Query: 633 actggcagaacttccagctgtgg 655
           | | |||||||||||||||||||
Sbjct: 47  aat-gcagaacttccagctgtgg 26



>gb|AV920993.1|AV920993 AV920993 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags16g24 3', mRNA sequence
          Length = 571

 Score = 54.0 bits (27), Expect = 7e-006
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtag 616
           |||||||||||||||||| ||||| ||||| |||||| |||||
Sbjct: 529 gcacagcatctgcctgggggactggtagtgcgccgtgaagtag 571



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,009
Number of Sequences: 312970
Number of extensions: 54009
Number of successful extensions: 14592
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14586
Number of HSP's gapped (non-prelim): 5
length of query: 725
length of database: 175,134,539
effective HSP length: 19
effective length of query: 706
effective length of database: 169,188,109
effective search space: 119446804954
effective search space used: 119446804954
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)