BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748535.2.1
(619 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL507698.1|AL507698 AL507698 Hordeum vulgare Barke devel... 68 4e-010
gb|BG300712.2|BG300712 HVSMEb0018B21f Hordeum vulgare seedl... 68 4e-010
gb|AV932284.1|AV932284 AV932284 K. Sato unpublished cDNA li... 68 4e-010
gb|AV932668.1|AV932668 AV932668 K. Sato unpublished cDNA li... 68 4e-010
gb|AV932909.1|AV932909 AV932909 K. Sato unpublished cDNA li... 68 4e-010
gb|BJ472039.1|BJ472039 BJ472039 K. Sato unpublished cDNA li... 68 4e-010
gb|BU984788.1|BU984788 HF05A10r HF Hordeum vulgare subsp. v... 68 4e-010
gb|BU990099.1|BU990099 HF24B10r HF Hordeum vulgare subsp. v... 68 4e-010
gb|CA012169.1|CA012169 HT04K11r HT Hordeum vulgare subsp. v... 68 4e-010
gb|CA028274.1|CA028274 HZ61I02r HZ Hordeum vulgare subsp. v... 68 4e-010
gb|CK122610.1|CK122610 BES1824104j23 BES1824 Hordeum vulgar... 68 4e-010
gb|BE215659.3|BE215659 HV_CEb0007L14f Hordeum vulgare seedl... 46 0.001
gb|AV917169.1|AV917169 AV917169 K. Sato unpublished cDNA li... 46 0.001
gb|BQ472834.1|BQ472834 HB01F10r BC Hordeum vulgare subsp. v... 42 0.021
gb|BU971669.1|BU971669 HB19E23r BC Hordeum vulgare subsp. v... 42 0.021
gb|BU974041.1|BU974041 HB26L16r BC Hordeum vulgare subsp. v... 42 0.021
gb|BU975772.1|BU975772 HB32E04r BC Hordeum vulgare subsp. v... 42 0.021
gb|CA028533.1|CA028533 HZ62F08r HZ Hordeum vulgare subsp. v... 42 0.021
>gb|AL507698.1|AL507698 AL507698 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06J16V 5',
mRNA sequence
Length = 700
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 404 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 463
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 464 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 523
Query: 452 ct 453
||
Sbjct: 524 ct 525
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 573 gacttcatgaagatgccattctctgataacacttttgatgc 613
>gb|BG300712.2|BG300712 HVSMEb0018B21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018B21f, mRNA sequence
Length = 601
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 406 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 465
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 466 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 525
Query: 452 ct 453
||
Sbjct: 526 ct 527
>gb|AV932284.1|AV932284 AV932284 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2p18 5', mRNA sequence
Length = 469
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 314 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 373
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 374 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 433
Query: 452 ct 453
||
Sbjct: 434 ct 435
>gb|AV932668.1|AV932668 AV932668 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1j14 5', mRNA sequence
Length = 580
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 245 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 304
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 305 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 364
Query: 452 ct 453
||
Sbjct: 365 ct 366
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 413 gacttcatgaagatgccattctctgataacacttttgatgc 453
>gb|AV932909.1|AV932909 AV932909 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal4j24 5', mRNA sequence
Length = 677
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 324 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 383
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 384 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 443
Query: 452 ct 453
||
Sbjct: 444 ct 445
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 492 gacttcatgaagatgccattctctgataacacttttgatgc 532
>gb|BJ472039.1|BJ472039 BJ472039 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal31k11 5', mRNA sequence
Length = 628
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 298 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 357
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 358 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 417
Query: 452 ct 453
||
Sbjct: 418 ct 419
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 466 gacttcatgaagatgccattctctgataacacttttgatgc 506
>gb|BU984788.1|BU984788 HF05A10r HF Hordeum vulgare subsp. vulgare cDNA clone HF05A10
5-PRIME, mRNA sequence
Length = 567
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 414 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 473
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 474 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 533
Query: 452 ct 453
||
Sbjct: 534 ct 535
>gb|BU990099.1|BU990099 HF24B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF24B10
5-PRIME, mRNA sequence
Length = 592
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 62 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 121
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 122 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 181
Query: 452 ct 453
||
Sbjct: 182 ct 183
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 230 gacttcatgaagatgccattctctgataacacttttgatgc 270
>gb|CA012169.1|CA012169 HT04K11r HT Hordeum vulgare subsp. vulgare cDNA clone HT04K11
5-PRIME, mRNA sequence
Length = 507
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 354 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 413
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 414 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 473
Query: 452 ct 453
||
Sbjct: 474 ct 475
>gb|CA028274.1|CA028274 HZ61I02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61I02
5-PRIME, mRNA sequence
Length = 678
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 424 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 483
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 484 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 543
Query: 452 ct 453
||
Sbjct: 544 ct 545
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 592 gacttcatgaagatgccattctctgataacacttttgatgc 632
>gb|CK122610.1|CK122610 BES1824104j23 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J234 5-PRIME, mRNA sequence
Length = 730
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 421 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagattt 480
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
||||| || || | |||||| |||||||||| |||||||| || | ||||| ||||||
Sbjct: 481 agctccacctcagttactggattgaacaacaacgactaccagataactaggggaaaggag 540
Query: 452 ct 453
||
Sbjct: 541 ct 542
>gb|BE215659.3|BE215659 HV_CEb0007L14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007L14f, mRNA sequence
Length = 523
Score = 46.1 bits (23), Expect = 0.001
Identities = 100/123 (81%), Gaps = 2/123 (1%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaa-atcgccagatt 390
||||||||||||||||| || |||||||| || || || |||| |||| || || |||||
Sbjct: 394 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaanattgcgagatt 453
Query: 391 cagctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagga 450
||||| || || | |||||| |||||||||| |||||||| || | ||||| |||||
Sbjct: 454 -agctccacctcagttactggattgaacaacaacgactaccaaataactaggggaaagga 512
Query: 451 gct 453
|||
Sbjct: 513 gct 515
>gb|AV917169.1|AV917169 AV917169 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8c03 5', mRNA sequence
Length = 503
Score = 46.1 bits (23), Expect = 0.001
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagatt 390
||||||||||||||||| || |||||||| || || || |||| |||||| || |||||
Sbjct: 202 atgaaggttttggatgtcggctgtggaataggcgggccgttaagagaaattgcgagatt 260
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 315 gacttcatgaagatgccattctctgataacacttttgatgc 355
>gb|BQ472834.1|BQ472834 HB01F10r BC Hordeum vulgare subsp. vulgare cDNA clone HB01F10
5-PRIME, mRNA sequence
Length = 404
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 134 gacttcatgaagatgccattctctgataacacttttgatgc 174
>gb|BU971669.1|BU971669 HB19E23r BC Hordeum vulgare subsp. vulgare cDNA clone HB19E23
5-PRIME, mRNA sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 68 gacttcatgaagatgccattctctgataacacttttgatgc 108
>gb|BU974041.1|BU974041 HB26L16r BC Hordeum vulgare subsp. vulgare cDNA clone HB26L16
5-PRIME, mRNA sequence
Length = 318
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 45 gacttcatgaagatgccattctctgataacacttttgatgc 85
>gb|BU975772.1|BU975772 HB32E04r BC Hordeum vulgare subsp. vulgare cDNA clone HB32E04
5-PRIME, mRNA sequence
Length = 521
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 103 gacttcatgaagatgccattctctgataacacttttgatgc 143
>gb|CA028533.1|CA028533 HZ62F08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62F08
5-PRIME, mRNA sequence
Length = 344
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 500 gacttcatggacatgccaatatctgataacacctttgatgc 540
||||||||| | |||||| | ||||||||||| ||||||||
Sbjct: 109 gacttcatgaagatgccattctctgataacacttttgatgc 149
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,498
Number of Sequences: 312970
Number of extensions: 60498
Number of successful extensions: 15261
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15225
Number of HSP's gapped (non-prelim): 36
length of query: 619
length of database: 175,134,539
effective HSP length: 19
effective length of query: 600
effective length of database: 169,188,109
effective search space: 101512865400
effective search space used: 101512865400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)