BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748394.2.2
(3527 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ468536.1|BQ468536 HM01I14T HM Hordeum vulgare subsp. v... 456 e-126
gb|BU994139.1|BU994139 HM05O02r HM Hordeum vulgare subsp. v... 224 2e-056
gb|BM442430.2|BM442430 EBan01_SQ003_C15_R anther, yellow st... 204 1e-050
gb|CB880803.1|CB880803 HM07O02w HM Hordeum vulgare subsp. v... 182 5e-044
gb|BM442254.2|BM442254 EBan01_SQ002_K17_R anther, yellow st... 109 6e-022
gb|BM442070.2|BM442070 EBan01_SQ002_B15_R anther, yellow st... 88 2e-015
gb|BQ661019.1|BQ661019 HM01I14w HM Hordeum vulgare subsp. v... 80 6e-013
gb|CA018281.1|CA018281 HV08C15r HV Hordeum vulgare subsp. v... 76 9e-012
gb|CA026869.1|CA026869 HZ57D09r HZ Hordeum vulgare subsp. v... 60 5e-007
gb|BG369152.1|BG369152 HVSMEi0022M21f Hordeum vulgare 20 DA... 48 0.002
gb|CB878749.1|CB878749 HP09K22T HP Hordeum vulgare subsp. v... 48 0.002
gb|BF628092.2|BF628092 HVSMEb0003B20f Hordeum vulgare seedl... 46 0.008
gb|AL507271.1|AL507271 AL507271 Hordeum vulgare Barke devel... 42 0.12
gb|BF627765.2|BF627765 HVSMEb0005L20f Hordeum vulgare seedl... 42 0.12
gb|BE060768.2|BE060768 HVSMEg0013E23f Hordeum vulgare pre-a... 42 0.12
gb|BG365527.1|BG365527 HVSMEi0003A22f Hordeum vulgare 20 DA... 42 0.12
gb|AW982409.3|AW982409 HVSMEg0003D03f Hordeum vulgare pre-a... 42 0.12
gb|BG367839.2|BG367839 HVSMEi0013O15f Hordeum vulgare 20 DA... 42 0.12
gb|BQ753547.1|BQ753547 EBan01_SQ004_J04_R anther, yellow st... 42 0.12
gb|BQ764285.1|BQ764285 EBan01_SQ005_L12_R anther, yellow st... 42 0.12
gb|BQ764323.1|BQ764323 EBan01_SQ005_D14_R anther, yellow st... 42 0.12
gb|BF254036.2|BF254036 HVSMEf0002N07f Hordeum vulgare seedl... 40 0.49
gb|BG368609.1|BG368609 HVSMEi0019O20f Hordeum vulgare 20 DA... 40 0.49
gb|BI950666.1|BI950666 HVSMEl0022E03f Hordeum vulgare spike... 40 0.49
gb|BI953590.1|BI953590 HVSMEm0013H17f Hordeum vulgare green... 40 0.49
gb|BI954178.1|BI954178 HVSMEm0016I01f Hordeum vulgare green... 40 0.49
gb|BI955086.1|BI955086 HVSMEm0021E15f Hordeum vulgare green... 40 0.49
gb|BE215463.1|BE215463 HV_CEb0006N22f Hordeum vulgare seedl... 40 0.49
gb|BF263259.2|BF263259 HV_CEa0006E10f Hordeum vulgare seedl... 40 0.49
gb|BF265094.2|BF265094 HV_CEa0011E02f Hordeum vulgare seedl... 40 0.49
gb|BF266150.2|BF266150 HV_CEa0014F01f Hordeum vulgare seedl... 40 0.49
gb|BE519800.2|BE519800 HV_CEb0021E12f Hordeum vulgare seedl... 40 0.49
gb|BE559183.2|BE559183 HV_CEb0023N18f Hordeum vulgare seedl... 40 0.49
gb|BG417407.2|BG417407 HVSMEk0017D17f Hordeum vulgare testa... 40 0.49
gb|BQ463226.1|BQ463226 HI04H02r HI Hordeum vulgare subsp. v... 40 0.49
gb|BI781008.2|BI781008 EBma03_SQ001_C08_R maternal, 8 DPA, ... 40 0.49
gb|BI781009.2|BI781009 EBma03_SQ001_C09_R maternal, 8 DPA, ... 40 0.49
gb|BQ761490.1|BQ761490 EBro08_SQ001_L08_R root, 3 week, dro... 40 0.49
gb|BQ762593.1|BQ762593 EBro02_SQ004_L09_R root, 3 week, hyd... 40 0.49
gb|BQ762771.1|BQ762771 EBro02_SQ006_E02 _R root, 3 week, hy... 40 0.49
gb|BQ768872.1|BQ768872 EBro08_SQ012_L22_R root, 3 week, dro... 40 0.49
gb|BU998763.1|BU998763 HI12B15r HI Hordeum vulgare subsp. v... 40 0.49
>gb|BQ468536.1|BQ468536 HM01I14T HM Hordeum vulgare subsp. vulgare cDNA clone HM01I14
5-PRIME, mRNA sequence
Length = 575
Score = 456 bits (230), Expect = e-126
Identities = 467/546 (85%)
Strand = Plus / Plus
Query: 1500 tttggagggtgcctcacccaagtcaatgcccccaatttgggccgaagtgatgcggttcct 1559
|||||| ||||| ||||| | |||| | |||||||| ||||| || ||||||||||||||
Sbjct: 29 tttggatggtgcttcaccgaggtcactacccccaatctgggctgaggtgatgcggttcct 88
Query: 1560 gaccaaccctcacaagccgatgatcctggcgttatcaagaccagacccgaagaagaacat 1619
||||||||||||||||| |||||||||||| | ||||| || || ||||| ||||||||
Sbjct: 89 caccaaccctcacaagccaatgatcctggcgctgtcaaggcctgatccgaaaaagaacat 148
Query: 1620 cactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaacttgcaaaccttac 1679
|||||| || |||||||| |||||||| || || ||||| ||||||||||||||| |
Sbjct: 149 cactactcttgtcaaagcatttggagaatgccgcccactaagggaacttgcaaacttagt 208
Query: 1680 tctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcct 1739
|||||||||||| |||||||||||||||||||| ||| || | ||||| || | |||||
Sbjct: 209 tctgatcatggggaacagagatgacatcgacgagatgcctcccggcaacgcaaacgtcct 268
Query: 1740 caccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaa 1799
|||||| || ||||||||| | ||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 269 caccactgtcctgaagctggtcgacaagtatgatctgtatggaagcgtggccttccccaa 328
Query: 1800 gcatcacaatcaggctgacgtcccggagatctatcgcctcgcggccaaaatgaagggcgt 1859
||||||||| ||||| |||||||| ||||| ||||||||| ||||||| | ||||| ||
Sbjct: 329 gcatcacaaccaggccgacgtccctgagatttatcgcctcacggccaagaccaagggtgt 388
Query: 1860 cttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgaggctgcggcaca 1919
||||||||| |||||||| || ||||| || || || || ||||||||||||||||| ||
Sbjct: 389 cttcatcaatcctgctcttgtggagcctttcggccttacactgatcgaggctgcggcgca 448
Query: 1920 cggactcccgatagtcgctaccaagaatggtggtccggtcgacattacaaatgcattaaa 1979
||| |||||||| ||||| |||||||| || |||||||||||||||||||||||| | ||
Sbjct: 449 cgggctcccgattgtcgccaccaagaacggcggtccggtcgacattacaaatgcactgaa 508
Query: 1980 caacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaagct 2039
|| || ||||| || ||||| |||||||||||||||||||| || || |||||||||||
Sbjct: 509 cagtgggctgctagtggacccgcacgaccagaacgccatcgccgacgcgctgctgaagct 568
Query: 2040 tgtggc 2045
|||||
Sbjct: 569 ggtggc 574
>gb|BU994139.1|BU994139 HM05O02r HM Hordeum vulgare subsp. vulgare cDNA clone HM05O02
5-PRIME, mRNA sequence
Length = 593
Score = 224 bits (113), Expect = 2e-056
Identities = 335/409 (81%)
Strand = Plus / Plus
Query: 2771 acatcagccaccgctggtcccatgacggcgcgaggcagaccatagcgaagctcatgggcg 2830
|||||| |||||| ||||| | |||||||| || ||||| |||| ||||||||||| |
Sbjct: 174 acatcaaccaccggtggtcttacgacggcgccagacagacgatagggaagctcatggcct 233
Query: 2831 ctcaggacggttcaggcgacgctgtcgagcaggacgtggcgtccagtaatgcacactgtg 2890
| |||||||| || ||| | | ||||||| |||||||| |||| | ||||| ||||| |
Sbjct: 234 cacaggacggctccggcaatgtcgtcgagccggacgtggagtcctgcaatgcgcactgcg 293
Query: 2891 tcgcgttcctcatcaaagacccccaaaaggtgaaaacggtcgatgagatgagggagcggc 2950
|| | ||| | ||| |||||| | ||||||| ||| | ||||||||| ||||| |||
Sbjct: 294 tctccttctttgtcagagacccgaagaaggtgagaactattgatgagatgcgggagaggc 353
Query: 2951 tgaggatgcgtggtctccgctgccacatcatgtactgcaggaactcgacaaggcttcagg 3010
||||||||||||| ||||| |||||| ||||||||||| |||||||||| ||| | ||||
Sbjct: 354 tgaggatgcgtggcctccggtgccacctcatgtactgccggaactcgacgaggatgcagg 413
Query: 3011 ttgtccctctgctagcatcaaggtcacaggcactcaggtatctttccgtgcgctggggcg 3070
|||||||||| | |||||||||||||| ||||||||||| || | ||||||||||||
Sbjct: 414 ttgtccctctcatggcatcaaggtcacaagcactcaggtacctctttgtgcgctggggct 473
Query: 3071 tatctgtggggaacatgtatctgatcaccggggaacatggcgacaccgatctagaggaga 3130
| | |||||||||||||| |||||| ||||| |||||||||||||||| |||||||
Sbjct: 474 tggccgtggggaacatgtacctgatcgttggggagcatggcgacaccgatcgcgaggaga 533
Query: 3131 tgctatccgggctacacaagaccgtgatcgtccgtggcgtcaccgagaa 3179
|||| || || ||||||||||| || |||||| |||||||| |||||
Sbjct: 534 tgctttcaggactacacaagacggtcatcgtcaaaggcgtcactgagaa 582
Score = 65.9 bits (33), Expect = 9e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 2618 ccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcgacgccctca 2677
||||||| |||||||| |||||| | || ||| | || |||||||||||||||| ||||
Sbjct: 21 ccgagacgctccagctcctgcagatggggaaggttcccccgaccgacttcgacgcgctca 80
Query: 2678 tctgtggcagcggcagcgaggtgtactatcctggcacggcg 2718
|||| || || |||||||| |||||||| || || ||||||
Sbjct: 81 tctgcggtagtggcagcgatgtgtactaccccggtacggcg 121
>gb|BM442430.2|BM442430 EBan01_SQ003_C15_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_C15 5', mRNA sequence
Length = 504
Score = 204 bits (103), Expect = 1e-050
Identities = 313/383 (81%)
Strand = Plus / Plus
Query: 2797 ggcgcgaggcagaccatagcgaagctcatgggcgctcaggacggttcaggcgacgctgtc 2856
||||| || ||||| |||| ||||||||||| | | |||||||| || ||| | | |||
Sbjct: 1 ggcgccagacagacgatagggaagctcatggcctcacaggacggctccggcaatgtcgtc 60
Query: 2857 gagcaggacgtggcgtccagtaatgcacactgtgtcgcgttcctcatcaaagacccccaa 2916
|||| |||||||| |||| | ||||| ||||| ||| | ||| | ||| |||||| |
Sbjct: 61 gagccggacgtggagtcctgcaatgcgcactgcgtctccttctttgtcagagacccgaag 120
Query: 2917 aaggtgaaaacggtcgatgagatgagggagcggctgaggatgcgtggtctccgctgccac 2976
||||||| ||| | ||||||||| ||||| |||||||||||||||| ||||| ||||||
Sbjct: 121 aaggtgagaactattgatgagatgcgggagaggctgaggatgcgtggcctccggtgccac 180
Query: 2977 atcatgtactgcaggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtca 3036
||||||||||| |||||||||| ||| | |||||||||||||| | ||||||||||||
Sbjct: 181 ctcatgtactgccggaactcgacgaggatgcaggttgtccctctcatggcatcaaggtca 240
Query: 3037 caggcactcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatc 3096
|| ||||||| ||| || | |||||||||||| | | |||||||||||||| ||||||
Sbjct: 241 caagcactcaagtacctctttgtgcgctggggcttggccgtggggaacatgtacctgatc 300
Query: 3097 accggggaacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtg 3156
||||| |||||||||||||||| ||||||||||| || || ||||||||||| ||
Sbjct: 301 gttggggagcatggcgacaccgatcgcgaggagatgctttcaggactacacaagacggtc 360
Query: 3157 atcgtccgtggcgtcaccgagaa 3179
|||||| |||||||| |||||
Sbjct: 361 atcgtcaaaggcgtcactgagaa 383
>gb|CB880803.1|CB880803 HM07O02w HM Hordeum vulgare subsp. vulgare cDNA clone HM07O02
3-PRIME, mRNA sequence
Length = 626
Score = 182 bits (92), Expect = 5e-044
Identities = 197/232 (84%)
Strand = Plus / Minus
Query: 2948 ggctgaggatgcgtggtctccgctgccacatcatgtactgcaggaactcgacaaggcttc 3007
|||||||||||||||| ||||| |||||| ||||||||||| |||||||||| ||| | |
Sbjct: 625 ggctgaggatgcgtggcctccggtgccacctcatgtactgccggaactcgacgaggatgc 566
Query: 3008 aggttgtccctctgctagcatcaaggtcacaggcactcaggtatctttccgtgcgctggg 3067
||||||||||||| | |||||||||||||| ||||||||||| || | ||||||||||
Sbjct: 565 aggttgtccctctcatggcatcaaggtcacaagcactcaggtacctctttgtgcgctggg 506
Query: 3068 gcgtatctgtggggaacatgtatctgatcaccggggaacatggcgacaccgatctagagg 3127
|| | | |||||||||||||| |||||| ||||| |||||||||||||||| ||||
Sbjct: 505 gcttggccgtggggaacatgtacctgatcgttggggagcatggcgacaccgatcgcgagg 446
Query: 3128 agatgctatccgggctacacaagaccgtgatcgtccgtggcgtcaccgagaa 3179
||||||| || || ||||||||||| || |||||| |||||||| |||||
Sbjct: 445 agatgctttcaggactacacaagacggtcatcgtcaaaggcgtcactgagaa 394
Score = 79.8 bits (40), Expect = 6e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 3271 gagctgaaggccgacgagatcatgcgggctctgaagcaagtctccaagacttccagcggc 3330
||||||||| |||| ||||||||||||||||| ||| | ||||||||| |||||||||||
Sbjct: 302 gagctgaagtccgatgagatcatgcgggctctcaaggaggtctccaaggcttccagcggc 243
Query: 3331 atgt 3334
||||
Sbjct: 242 atgt 239
>gb|BM442254.2|BM442254 EBan01_SQ002_K17_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_K17 5', mRNA sequence
Length = 127
Score = 109 bits (55), Expect = 6e-022
Identities = 91/103 (88%)
Strand = Plus / Plus
Query: 2081 ggctgcgcaacatccacctctactcatggccggagcactgccgcacttacctcaccaggg 2140
||||||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||
Sbjct: 1 ggctgcgcaacatccacctctactcgtggccggagcactgccggacgtacctcgccaggg 60
Query: 2141 tggccgggtgccggttaaggaacccgaggtggctgaaggacac 2183
|||| ||| ||||| | ||||||||| | ||||| || |||||
Sbjct: 61 tggctgggagccggattaggaacccgcgctggctcaaagacac 103
>gb|BM442070.2|BM442070 EBan01_SQ002_B15_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_B15 5', mRNA sequence
Length = 260
Score = 87.7 bits (44), Expect = 2e-015
Identities = 107/128 (83%)
Strand = Plus / Plus
Query: 3025 gcatcaaggtcacaggcactcaggtatctttccgtgcgctggggcgtatctgtggggaac 3084
||||||| |||||| ||||||||||| || | |||||||||||| | | |||||||||
Sbjct: 7 gcatcaatgtcacaagcactcaggtacctctttgtgcgctggggcttggccgtggggaac 66
Query: 3085 atgtatctgatcaccggggaacatggcgacaccgatctagaggagatgctatccgggcta 3144
||||| |||||| ||||| |||||||||||||||| ||||||||||| || | |||
Sbjct: 67 atgtacctgatcgttggggagcatggcgacaccgatcgcgaggagatgctttcacgacta 126
Query: 3145 cacaagac 3152
||||||||
Sbjct: 127 cacaagac 134
>gb|BQ661019.1|BQ661019 HM01I14w HM Hordeum vulgare subsp. vulgare cDNA clone HM01I14
3-PRIME, mRNA sequence
Length = 456
Score = 79.8 bits (40), Expect = 6e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 3271 gagctgaaggccgacgagatcatgcgggctctgaagcaagtctccaagacttccagcggc 3330
||||||||| |||| ||||||||||||||||| ||| | ||||||||| |||||||||||
Sbjct: 301 gagctgaagtccgatgagatcatgcgggctctcaaggaggtctccaaggcttccagcggc 242
Query: 3331 atgt 3334
||||
Sbjct: 241 atgt 238
Score = 40.1 bits (20), Expect = 0.49
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 3124 gaggagatgctatccgggctacacaagaccgtgatcgtccgtggcgtcaccgagaa 3179
||||||||||| || || ||||||||||| || |||||| |||||||| |||||
Sbjct: 448 gaggagatgctttcaggactacacaagacggtcatcgtcaaaggcgtcactgagaa 393
>gb|CA018281.1|CA018281 HV08C15r HV Hordeum vulgare subsp. vulgare cDNA clone HV08C15
5-PRIME, mRNA sequence
Length = 613
Score = 75.8 bits (38), Expect = 9e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggccag 720
||||||||||| ||||| ||||| ||||| ||||| || ||||| ||||| |||||||||
Sbjct: 332 catggtcttgtccgtggtgaaaatatggagctaggccgagattcagatactggtggccag 391
Query: 721 gtgaaatatgtggt 734
|| |||||||||||
Sbjct: 392 gtcaaatatgtggt 405
>gb|CA026869.1|CA026869 HZ57D09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57D09
5-PRIME, mRNA sequence
Length = 431
Score = 60.0 bits (30), Expect = 5e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 358 gagcgcagcaccaggctcgagaacatgtgctggcggatctggcacctcgcgcgcaagaag 417
||||||| ||| |||| |||||||||| ||||||||||||| ||||||| | ||||||
Sbjct: 101 gagcgcaacacgcggctggagaacatgtcctggcggatctggaacctcgccaggaagaag 160
Query: 418 aagcag 423
||||||
Sbjct: 161 aagcag 166
>gb|BG369152.1|BG369152 HVSMEi0022M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0022M21f, mRNA sequence
Length = 826
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1274 ttgtaatcacgagcacaaggcaggagattgatgagcagtggggattgtacgatggatttg 1333
|||||||||| ||||| ||||| ||||| ||| | || |||||||| || |||||||||
Sbjct: 206 ttgtaatcacaagcactaggcaagagatagataaacaatggggattatataatggatttg 265
Query: 1334 atgt 1337
||||
Sbjct: 266 atgt 269
>gb|CB878749.1|CB878749 HP09K22T HP Hordeum vulgare subsp. vulgare cDNA clone HP09K22
5-PRIME, mRNA sequence
Length = 374
Score = 48.1 bits (24), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 2077 aacgggctgcgcaacatccacctctactcatggccggagcactgccgc 2124
||||| |||||||||||||||| || ||| |||||| | |||||||||
Sbjct: 115 aacggcctgcgcaacatccaccgcttctcgtggccgcaccactgccgc 162
>gb|BF628092.2|BF628092 HVSMEb0003B20f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003B20f, mRNA sequence
Length = 485
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 176 ggggtgccggcggcggcggcggc 198
|||||||||||||||||||||||
Sbjct: 48 ggggtgccggcggcggcggcggc 26
>gb|AL507271.1|AL507271 AL507271 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01I22V 5',
mRNA sequence
Length = 133
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 174 gcggggtgccggcggcggcggcggc 198
|||||||| ||||||||||||||||
Sbjct: 71 gcggggtggcggcggcggcggcggc 47
>gb|BF627765.2|BF627765 HVSMEb0005L20f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005L20f, mRNA sequence
Length = 767
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 174 gcggggtgccggcggcggcggcggc 198
|||||||| ||||||||||||||||
Sbjct: 68 gcggggtggcggcggcggcggcggc 44
>gb|BE060768.2|BE060768 HVSMEg0013E23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013E23f, mRNA sequence
Length = 601
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 174 gcggggtgccggcggcggcggcggc 198
|||||||| ||||||||||||||||
Sbjct: 72 gcggggtggcggcggcggcggcggc 48
>gb|BG365527.1|BG365527 HVSMEi0003A22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0003A22f, mRNA sequence
Length = 869
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 174 gcggggtgccggcggcggcggcggc 198
|||||||| ||||||||||||||||
Sbjct: 200 gcggggtggcggcggcggcggcggc 176
>gb|AW982409.3|AW982409 HVSMEg0003D03f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003D03f, mRNA sequence
Length = 1023
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 174 gcggggtgccggcggcggcggcggc 198
|||||||| ||||||||||||||||
Sbjct: 75 gcggggtggcggcggcggcggcggc 51
>gb|BG367839.2|BG367839 HVSMEi0013O15f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0013O15f, mRNA sequence
Length = 710
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 174 gcggggtgccggcggcggcggcggc 198
|||||||| ||||||||||||||||
Sbjct: 64 gcggggtggcggcggcggcggcggc 40
>gb|BQ753547.1|BQ753547 EBan01_SQ004_J04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_J04 5', mRNA sequence
Length = 670
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 gaggagggtcgggcggggagg 106
|||||||||||||||||||||
Sbjct: 248 gaggagggtcgggcggggagg 268
>gb|BQ764285.1|BQ764285 EBan01_SQ005_L12_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_L12 5', mRNA sequence
Length = 518
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 gaggagggtcgggcggggagg 106
|||||||||||||||||||||
Sbjct: 250 gaggagggtcgggcggggagg 270
>gb|BQ764323.1|BQ764323 EBan01_SQ005_D14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_D14 5', mRNA sequence
Length = 581
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 gaggagggtcgggcggggagg 106
|||||||||||||||||||||
Sbjct: 248 gaggagggtcgggcggggagg 268
>gb|BF254036.2|BF254036 HVSMEf0002N07f Hordeum vulgare seedling root EST library
HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEf0002N07f, mRNA sequence
Length = 554
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 62 cggccgggcgcgggggagaggagg 39
>gb|BG368609.1|BG368609 HVSMEi0019O20f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019O20f, mRNA sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 104 cggccgggcgcgggggagaggagg 81
>gb|BI950666.1|BI950666 HVSMEl0022E03f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0022E03f, mRNA sequence
Length = 896
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 51 cggccgggcgcgggggagaggagg 28
>gb|BI953590.1|BI953590 HVSMEm0013H17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013H17f, mRNA sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 107 cggccgggcgcgggggagaggagg 84
>gb|BI954178.1|BI954178 HVSMEm0016I01f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0016I01f, mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 104 cggccgggcgcgggggagaggagg 81
>gb|BI955086.1|BI955086 HVSMEm0021E15f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0021E15f, mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 59 cggccgggcgcgggggagaggagg 36
>gb|BE215463.1|BE215463 HV_CEb0006N22f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006N22f, mRNA sequence
Length = 483
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 100 cggccgggcgcgggggagaggagg 77
>gb|BF263259.2|BF263259 HV_CEa0006E10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006E10f, mRNA sequence
Length = 596
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 49 cggccgggcgcgggggagaggagg 26
>gb|BF265094.2|BF265094 HV_CEa0011E02f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0011E02f, mRNA sequence
Length = 822
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 63 cggccgggcgcgggggagaggagg 40
>gb|BF266150.2|BF266150 HV_CEa0014F01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0014F01f, mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 106 cggccgggcgcgggggagaggagg 83
>gb|BE519800.2|BE519800 HV_CEb0021E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021E12f, mRNA sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 53 cggccgggcgcgggggagaggagg 30
>gb|BE559183.2|BE559183 HV_CEb0023N18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023N18f, mRNA sequence
Length = 807
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 571 aagaagaagttccagaggaa 590
||||||||||||||||||||
Sbjct: 556 aagaagaagttccagaggaa 575
>gb|BG417407.2|BG417407 HVSMEk0017D17f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017D17f, mRNA sequence
Length = 829
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 179 gtgccggcggcggcggcggc 198
||||||||||||||||||||
Sbjct: 378 gtgccggcggcggcggcggc 359
>gb|BQ463226.1|BQ463226 HI04H02r HI Hordeum vulgare subsp. vulgare cDNA clone HI04H02
5-PRIME, mRNA sequence
Length = 292
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 175 cggggtgccggcggcggcggcggc 198
||||| ||||||||||||||||||
Sbjct: 106 cggggcgccggcggcggcggcggc 129
>gb|BI781008.2|BI781008 EBma03_SQ001_C08_R maternal, 8 DPA, no treatment, cv Optic,
EBma03 Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ001_C08 5', mRNA sequence
Length = 538
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 42 cggccgggcgcgggggagaggagg 19
>gb|BI781009.2|BI781009 EBma03_SQ001_C09_R maternal, 8 DPA, no treatment, cv Optic,
EBma03 Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ001_C09 5', mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 42 cggccgggcgcgggggagaggagg 19
>gb|BQ761490.1|BQ761490 EBro08_SQ001_L08_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ001_L08 5', mRNA sequence
Length = 264
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 424 ctggagctggagggcatcca 443
||||||||||||||||||||
Sbjct: 15 ctggagctggagggcatcca 34
>gb|BQ762593.1|BQ762593 EBro02_SQ004_L09_R root, 3 week, hydroponic grown, low nitrogen,
cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA
clone EBro02_SQ004_L09 5', mRNA sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 56 cggccgggcgcgggggagaggagg 33
>gb|BQ762771.1|BQ762771 EBro02_SQ006_E02 _R root, 3 week, hydroponic grown, low nitrogen,
cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA
clone EBro02_SQ006_E02 5', mRNA sequence
Length = 617
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 76 cggccgggcgcgggggagaggagg 53
>gb|BQ768872.1|BQ768872 EBro08_SQ012_L22_R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_L22 5', mRNA sequence
Length = 676
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 cggccgggcgcgcgggagaggagg 89
|||||||||||| |||||||||||
Sbjct: 50 cggccgggcgcgggggagaggagg 27
>gb|BU998763.1|BU998763 HI12B15r HI Hordeum vulgare subsp. vulgare cDNA clone HI12B15
5-PRIME, mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 179 gtgccggcggcggcggcggc 198
||||||||||||||||||||
Sbjct: 459 gtgccggcggcggcggcggc 478
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 497,562
Number of Sequences: 312970
Number of extensions: 497562
Number of successful extensions: 168211
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 168098
Number of HSP's gapped (non-prelim): 90
length of query: 3527
length of database: 175,134,539
effective HSP length: 20
effective length of query: 3507
effective length of database: 168,875,139
effective search space: 592245112473
effective search space used: 592245112473
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)