BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3742548.2.1
(554 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA028447.1|CA028447 HZ61P23r HZ Hordeum vulgare subsp. v... 86 1e-015
gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedl... 74 5e-012
gb|BF627303.3|BF627303 HVSMEb0004I01f Hordeum vulgare seedl... 68 3e-010
gb|BF629412.3|BF629412 HVSMEb0012D18f Hordeum vulgare seedl... 68 3e-010
gb|AV917230.1|AV917230 AV917230 K. Sato unpublished cDNA li... 68 3e-010
gb|AV917240.1|AV917240 AV917240 K. Sato unpublished cDNA li... 68 3e-010
gb|AV917724.1|AV917724 AV917724 K. Sato unpublished cDNA li... 68 3e-010
gb|AV917809.1|AV917809 AV917809 K. Sato unpublished cDNA li... 68 3e-010
gb|AV918924.1|AV918924 AV918924 K. Sato unpublished cDNA li... 68 3e-010
gb|AV919113.1|AV919113 AV919113 K. Sato unpublished cDNA li... 68 3e-010
gb|AV919240.1|AV919240 AV919240 K. Sato unpublished cDNA li... 68 3e-010
gb|AV919454.1|AV919454 AV919454 K. Sato unpublished cDNA li... 68 3e-010
gb|AV920535.1|AV920535 AV920535 K. Sato unpublished cDNA li... 68 3e-010
gb|AV922397.1|AV922397 AV922397 K. Sato unpublished cDNA li... 68 3e-010
gb|AV922407.1|AV922407 AV922407 K. Sato unpublished cDNA li... 68 3e-010
gb|AV922497.1|AV922497 AV922497 K. Sato unpublished cDNA li... 68 3e-010
gb|BJ463386.1|BJ463386 BJ463386 K. Sato unpublished cDNA li... 68 3e-010
gb|BJ464883.1|BJ464883 BJ464883 K. Sato unpublished cDNA li... 68 3e-010
gb|BJ465805.1|BJ465805 BJ465805 K. Sato unpublished cDNA li... 68 3e-010
gb|BJ466813.1|BJ466813 BJ466813 K. Sato unpublished cDNA li... 68 3e-010
gb|BJ466913.1|BJ466913 BJ466913 K. Sato unpublished cDNA li... 68 3e-010
gb|BQ471267.1|BQ471267 HV01P03T HV Hordeum vulgare subsp. v... 68 3e-010
gb|CA017757.1|CA017757 HV06C16r HV Hordeum vulgare subsp. v... 68 3e-010
gb|CA019349.1|CA019349 HV11L11r HV Hordeum vulgare subsp. v... 68 3e-010
gb|BQ471971.1|BQ471971 HV04A16r HV Hordeum vulgare subsp. v... 66 1e-009
gb|BQ664118.1|BQ664118 HV01P03w HV Hordeum vulgare subsp. v... 66 1e-009
gb|BM101180.2|BM101180 EBpi01_SQ003_C01_R pistil, 1 DPA, no... 66 1e-009
gb|BJ466231.1|BJ466231 BJ466231 K. Sato unpublished cDNA li... 64 5e-009
gb|BF631513.2|BF631513 HVSMEb0016D19f Hordeum vulgare seedl... 62 2e-008
gb|AV912967.1|AV912967 AV912967 K. Sato unpublished cDNA li... 60 8e-008
gb|AV913057.1|AV913057 AV913057 K. Sato unpublished cDNA li... 60 8e-008
gb|BJ545191.1|BJ545191 BJ545191 K. Sato unpublished cDNA li... 50 8e-005
gb|BJ546669.1|BJ546669 BJ546669 K. Sato unpublished cDNA li... 50 8e-005
gb|BI958715.1|BI958715 HVSMEn0016F08f Hordeum vulgare rachi... 48 3e-004
gb|BQ764639.1|BQ764639 EBca01_SQ004_O12_R carpel, pre-anthe... 48 3e-004
gb|CA006248.1|CA006248 HU14K18u HU Hordeum vulgare subsp. v... 48 3e-004
gb|CA009631.1|CA009631 HU14K18r HU Hordeum vulgare subsp. v... 48 3e-004
gb|BE195199.3|BE195199 HVSMEh0088J02f Hordeum vulgare 5-45 ... 46 0.001
gb|CA013705.1|CA013705 HT09E03r HT Hordeum vulgare subsp. v... 46 0.001
gb|BQ761294.1|BQ761294 EBro05_SQ003_A11_R root, 3 week, red... 38 0.30
emb|AJ865043.1| Hordeum vulgare subsp. vulgare transposon M... 38 0.30
emb|AJ865044.1| Hordeum vulgare subsp. vulgare transposon M... 38 0.30
emb|AJ865049.1| Hordeum vulgare subsp. vulgare transposon M... 38 0.30
emb|AJ865060.1| Hordeum vulgare subsp. vulgare transposon M... 38 0.30
>gb|CA028447.1|CA028447 HZ61P23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61P23
5-PRIME, mRNA sequence
Length = 580
Score = 85.7 bits (43), Expect = 1e-015
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||||
Sbjct: 572 gccgggtccctgccgatcgcccacgcgttgacgagcaccatggcgcccgccggcacgtcg 513
Query: 526 tacccgagcacctggcacg 544
| ||||| ||| ||||||
Sbjct: 512 aagccgaggacccggcacg 494
>gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007H18f, mRNA sequence
Length = 531
Score = 73.8 bits (37), Expect = 5e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 469 gggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgtac 528
|||||||||| |||||||||||||||||||| ||| ||| |||| ||||||||||||
Sbjct: 376 gggtccctgcagatcgcccacgcgttcacgaacacggtggcgcccttgggcacgtcgtac 317
Query: 529 ccgagcacctggcacgc 545
||||| |||| ||||||
Sbjct: 316 ccgaggaccttgcacgc 300
Score = 48.1 bits (24), Expect = 3e-004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 352 gggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaagtcc 411
|||||||||| ||| ||||| |||||||| || ||||||||| | |||||||||||||
Sbjct: 493 gggcagatcctccggccggccccgaacggcgtgtactcgaagttggtccccttgaagtcc 434
>gb|BF627303.3|BF627303 HVSMEb0004I01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004I01f, mRNA sequence
Length = 741
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 229 ggccgggtccctgccgatcgcccacgcgttcaccatca 192
>gb|BF629412.3|BF629412 HVSMEb0012D18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012D18f, mRNA sequence
Length = 846
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 487 ggccgggtccctgccgatcgcccacgcgttcaccatca 450
>gb|AV917230.1|AV917230 AV917230 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18a18 5', mRNA sequence
Length = 619
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 329 ggccgggtccctgccgatcgcccacgcgttcaccatca 292
>gb|AV917240.1|AV917240 AV917240 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b11 5', mRNA sequence
Length = 586
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 131 ggccgggtccctgccgatcgcccacgcgttcaccatca 94
>gb|AV917724.1|AV917724 AV917724 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11c24 3', mRNA sequence
Length = 578
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 452 ggccgggtccctgccgatcgcccacgcgttcaccatca 489
>gb|AV917809.1|AV917809 AV917809 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11k05 3', mRNA sequence
Length = 630
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 430 ggccgggtccctgccgatcgcccacgcgttcaccatca 467
>gb|AV918924.1|AV918924 AV918924 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22l15 3', mRNA sequence
Length = 566
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 474 ggccgggtccctgccgatcgcccacgcgttcaccatca 511
>gb|AV919113.1|AV919113 AV919113 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4j07 3', mRNA sequence
Length = 646
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 429 ggccgggtccctgccgatcgcccacgcgttcaccatca 466
>gb|AV919240.1|AV919240 AV919240 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5c10 3', mRNA sequence
Length = 669
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 466 ggccgggtccctgccgatcgcccacgcgttcaccatca 503
>gb|AV919454.1|AV919454 AV919454 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b21 3', mRNA sequence
Length = 712
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 389 ggccgggtccctgccgatcgcccacgcgttcaccatca 426
>gb|AV920535.1|AV920535 AV920535 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14g24 3', mRNA sequence
Length = 499
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 449 ggccgggtccctgccgatcgcccacgcgttcaccatca 486
>gb|AV922397.1|AV922397 AV922397 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18a18 3', mRNA sequence
Length = 718
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 466 ggccgggtccctgccgatcgcccacgcgttcaccatca 503
>gb|AV922407.1|AV922407 AV922407 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b11 3', mRNA sequence
Length = 560
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 430 ggccgggtccctgccgatcgcccacgcgttcaccatca 467
>gb|AV922497.1|AV922497 AV922497 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18g21 3', mRNA sequence
Length = 670
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 467 ggccgggtccctgccgatcgcccacgcgttcaccatca 504
>gb|BJ463386.1|BJ463386 BJ463386 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27g14 5', mRNA sequence
Length = 528
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 406 ggccgggtccctgccgatcgcccacgcgttcaccatca 369
>gb|BJ464883.1|BJ464883 BJ464883 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36h03 5', mRNA sequence
Length = 582
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 329 ggccgggtccctgccgatcgcccacgcgttcaccatca 292
>gb|BJ465805.1|BJ465805 BJ465805 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27g14 3', mRNA sequence
Length = 511
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 431 ggccgggtccctgccgatcgcccacgcgttcaccatca 468
>gb|BJ466813.1|BJ466813 BJ466813 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34b17 3', mRNA sequence
Length = 729
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 418 ggccgggtccctgccgatcgcccacgcgttcaccatca 455
>gb|BJ466913.1|BJ466913 BJ466913 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35a04 3', mRNA sequence
Length = 719
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 467 ggccgggtccctgccgatcgcccacgcgttcaccatca 504
>gb|BQ471267.1|BQ471267 HV01P03T HV Hordeum vulgare subsp. vulgare cDNA clone HV01P03
5-PRIME, mRNA sequence
Length = 610
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 358 ggccgggtccctgccgatcgcccacgcgttcaccatca 321
>gb|CA017757.1|CA017757 HV06C16r HV Hordeum vulgare subsp. vulgare cDNA clone HV06C16
5-PRIME, mRNA sequence
Length = 477
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 436 ggccgggtccctgccgatcgcccacgcgttcaccatca 473
>gb|CA019349.1|CA019349 HV11L11r HV Hordeum vulgare subsp. vulgare cDNA clone HV11L11
5-PRIME, mRNA sequence
Length = 495
Score = 67.9 bits (34), Expect = 3e-010
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||||| ||||
Sbjct: 398 ggccgggtccctgccgatcgcccacgcgttcaccatca 361
>gb|BQ471971.1|BQ471971 HV04A16r HV Hordeum vulgare subsp. vulgare cDNA clone HV04A16
5-PRIME, mRNA sequence
Length = 469
Score = 65.9 bits (33), Expect = 1e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcac 497
|||||||||||||||||||||||||||||||||
Sbjct: 436 ggccgggtccctgccgatcgcccacgcgttcac 468
>gb|BQ664118.1|BQ664118 HV01P03w HV Hordeum vulgare subsp. vulgare cDNA clone HV01P03
3-PRIME, mRNA sequence
Length = 591
Score = 65.9 bits (33), Expect = 1e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcac 497
|||||||||||||||||||||||||||||||||
Sbjct: 477 ggccgggtccctgccgatcgcccacgcgttcac 509
>gb|BM101180.2|BM101180 EBpi01_SQ003_C01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_C01 5', mRNA sequence
Length = 537
Score = 65.9 bits (33), Expect = 1e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcac 497
|||||||||||||||||||||||||||||||||
Sbjct: 413 ggccgggtccctgccgatcgcccacgcgttcac 445
>gb|BJ466231.1|BJ466231 BJ466231 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31e07 3', mRNA sequence
Length = 580
Score = 63.9 bits (32), Expect = 5e-009
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 467 ccgggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||||| ||||
Sbjct: 433 ccgggtccctgccgatcgcccacgcgttcaccatca 468
>gb|BF631513.2|BF631513 HVSMEb0016D19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0016D19f, mRNA sequence
Length = 823
Score = 61.9 bits (31), Expect = 2e-008
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 465 ggccgggtccctgccgatcgcccacgcgttcacgatca 502
||| ||||||||||||||||||||||||||||| ||||
Sbjct: 730 ggcngggtccctgccgatcgcccacgcgttcaccatca 693
>gb|AV912967.1|AV912967 AV912967 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11c24 5', mRNA sequence
Length = 489
Score = 60.0 bits (30), Expect = 8e-008
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 465 ggccgggtccctgccgatcgcccacgcgtt 494
||||||||||||||||||||||||||||||
Sbjct: 373 ggccgggtccctgccgatcgcccacgcgtt 344
>gb|AV913057.1|AV913057 AV913057 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11k05 5', mRNA sequence
Length = 567
Score = 60.0 bits (30), Expect = 8e-008
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 469 gggtccctgccgatcgcccacgcgttcacgatca 502
||||||||||||||||||||||||||||| ||||
Sbjct: 567 gggtccctgccgatcgcccacgcgttcaccatca 534
>gb|BJ545191.1|BJ545191 BJ545191 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45m01 5', mRNA sequence
Length = 603
Score = 50.1 bits (25), Expect = 8e-005
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 469 gggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgtac 528
|||||||| |||||||||||||||||||| | ||||| ||||| | || | |||||||
Sbjct: 469 gggtccctaccgatcgcccacgcgttcaccaaaaccgttgtgccctcgggtatgtcgtac 410
Query: 529 ccgag 533
|||||
Sbjct: 409 ccgag 405
>gb|BJ546669.1|BJ546669 BJ546669 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45m01 3', mRNA sequence
Length = 730
Score = 50.1 bits (25), Expect = 8e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgtac 528
|||||||| |||||||||||||||||||| | ||||| ||||| | || | |||||||
Sbjct: 479 gggtccctaccgatcgcccacgcgttcaccaaaaccgttgtgccctcgggtatgtcgtac 538
Query: 529 ccgag 533
|||||
Sbjct: 539 ccgag 543
>gb|BI958715.1|BI958715 HVSMEn0016F08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016F08f, mRNA sequence
Length = 642
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 352 gggcagatccgccgcccggcaccgaacggtat 383
||||||||||||||||| || |||||||||||
Sbjct: 340 gggcagatccgccgccccgccccgaacggtat 309
>gb|BQ764639.1|BQ764639 EBca01_SQ004_O12_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_O12 5', mRNA sequence
Length = 559
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 352 gggcagatccgccgcccggcaccgaacggtat 383
||||||||||||||||| || |||||||||||
Sbjct: 40 gggcagatccgccgccccgccccgaacggtat 9
>gb|CA006248.1|CA006248 HU14K18u HU Hordeum vulgare subsp. vulgare cDNA clone HU14K18
3-PRIME, mRNA sequence
Length = 588
Score = 48.1 bits (24), Expect = 3e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaact 388
|||||||||||| |||| ||||||||| || ||||||| |||||
Sbjct: 383 catgccggggcacatcctccgcccggctccaaacggtaagaact 426
>gb|CA009631.1|CA009631 HU14K18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14K18
5-PRIME, mRNA sequence
Length = 630
Score = 48.1 bits (24), Expect = 3e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaact 388
|||||||||||| |||| ||||||||| || ||||||| |||||
Sbjct: 351 catgccggggcacatcctccgcccggctccaaacggtaagaact 308
>gb|BE195199.3|BE195199 HVSMEh0088J02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088J02f, mRNA sequence
Length = 624
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggca 542
||||||||||||||| |||||||||||
Sbjct: 226 cggcacgtcgtaccccagcacctggca 200
>gb|CA013705.1|CA013705 HT09E03r HT Hordeum vulgare subsp. vulgare cDNA clone HT09E03
5-PRIME, mRNA sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggca 542
||||||||||||||| |||||||||||
Sbjct: 301 cggcacgtcgtaccccagcacctggca 275
>gb|BQ761294.1|BQ761294 EBro05_SQ003_A11_R root, 3 week, reduced light, cv Optic, EBro05
Hordeum vulgare subsp. vulgare cDNA clone
EBro05_SQ003_A11 5', mRNA sequence
Length = 262
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 124 gaacaagccctcaaggaga 142
|||||||||||||||||||
Sbjct: 126 gaacaagccctcaaggaga 144
>emb|AJ865043.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
SQ004T7A02
Length = 135
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 114 aggaataaccgaacaagccctca 136
|||| ||||||||||||||||||
Sbjct: 113 aggattaaccgaacaagccctca 135
>emb|AJ865044.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
SQ004T7B02
Length = 135
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 114 aggaataaccgaacaagccctca 136
|||| ||||||||||||||||||
Sbjct: 113 aggattaaccgaacaagccctca 135
>emb|AJ865049.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
SQ004T7C01
Length = 135
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 114 aggaataaccgaacaagccctca 136
|||| ||||||||||||||||||
Sbjct: 113 aggattaaccgaacaagccctca 135
>emb|AJ865060.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
SQ004T7C04
Length = 134
Score = 38.2 bits (19), Expect = 0.30
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 114 aggaataaccgaacaagccctca 136
|||| ||||||||||||||||||
Sbjct: 112 aggattaaccgaacaagccctca 134
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,561
Number of Sequences: 312970
Number of extensions: 50561
Number of successful extensions: 14510
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14460
Number of HSP's gapped (non-prelim): 50
length of query: 554
length of database: 175,134,539
effective HSP length: 19
effective length of query: 535
effective length of database: 169,188,109
effective search space: 90515638315
effective search space used: 90515638315
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)