BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI950935.1|BI950935 HVSMEl0023L12f Hordeum vulgare spike... 46 0.001
gb|BI780849.2|BI780849 EBma05_SQ001_C24_R maternal, 12 DPA,... 46 0.001
gb|BG343503.2|BG343503 HVSMEg0005P03f Hordeum vulgare pre-a... 42 0.020
gb|CV060419.1|CV060419 BNEL57h5 Barley EST endosperm librar... 42 0.020
gb|BG365519.2|BG365519 HVSMEi0003A05f Hordeum vulgare 20 DA... 40 0.077
gb|AL502588.1|AL502588 AL502588 Hordeum vulgare Barke roots... 38 0.30
gb|BF263807.1|BF263807 HV_CEa0007L16f Hordeum vulgare seedl... 38 0.30
gb|AV909257.1|AV909257 AV909257 K. Sato unpublished cDNA li... 38 0.30
gb|AV911143.1|AV911143 AV911143 K. Sato unpublished cDNA li... 38 0.30
gb|AV917397.1|AV917397 AV917397 K. Sato unpublished cDNA li... 38 0.30
gb|AV922575.1|AV922575 AV922575 K. Sato unpublished cDNA li... 38 0.30
gb|AV927965.1|AV927965 AV927965 K. Sato unpublished cDNA li... 38 0.30
gb|AV929911.1|AV929911 AV929911 K. Sato unpublished cDNA li... 38 0.30
gb|BQ468055.1|BQ468055 HR01M22r HR Hordeum vulgare subsp. v... 38 0.30
gb|BQ661345.1|BQ661345 HM03B15u HM Hordeum vulgare subsp. v... 38 0.30
gb|BQ765855.1|BQ765855 EBro03_SQ008_I10_R root, 3 week, wat... 38 0.30
gb|BQ767809.1|BQ767809 EBro08_SQ009_L22_R root, 3 week, dro... 38 0.30
gb|BQ768522.1|BQ768522 EBro08_SQ011_O20_R root, 3 week, dro... 38 0.30
gb|BU985131.1|BU985131 HF06D17r HF Hordeum vulgare subsp. v... 38 0.30
gb|CA006015.1|CA006015 HU05O05u HU Hordeum vulgare subsp. v... 38 0.30
gb|CA022093.1|CA022093 HZ42C09r HZ Hordeum vulgare subsp. v... 38 0.30
gb|CB859122.1|CB859122 HI09G17w HI Hordeum vulgare subsp. v... 38 0.30
gb|CB859686.1|CB859686 HI11E03w HI Hordeum vulgare subsp. v... 38 0.30
gb|CB859989.1|CB859989 HI12E03w HI Hordeum vulgare subsp. v... 38 0.30
gb|CB876853.1|CB876853 HP02K02T HP Hordeum vulgare subsp. v... 38 0.30
gb|CD662731.1|CD662731 UCRHV18_02dg09_b1 Drought-stressed D... 38 0.30
gb|CK122193.1|CK122193 BES1824101p15 BES1824 Hordeum vulgar... 38 0.30
>gb|BI950935.1|BI950935 HVSMEl0023L12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023L12f, mRNA sequence
Length = 536
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttc 103
||||||||| |||||||||||||||||
Sbjct: 317 tacctgggcaggccgtggaaggagttc 343
>gb|BI780849.2|BI780849 EBma05_SQ001_C24_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_C24 5', mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttc 103
||||||||| |||||||||||||||||
Sbjct: 468 tacctgggcaggccgtggaaggagttc 494
>gb|BG343503.2|BG343503 HVSMEg0005P03f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005P03f, mRNA sequence
Length = 575
Score = 42.1 bits (21), Expect = 0.020
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 221 cagcagcagcaacagcaacaa 241
>gb|CV060419.1|CV060419 BNEL57h5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL57h5 5' similar to bZIP family
transcription factor, mRNA sequence
Length = 540
Score = 42.1 bits (21), Expect = 0.020
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 317 cagcagcagcaacagcaacaa 297
>gb|BG365519.2|BG365519 HVSMEi0003A05f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0003A05f, mRNA sequence
Length = 782
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 219 cagcagcagcaacagcaaca 238
>gb|AL502588.1|AL502588 AL502588 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08B12u 3', mRNA sequence
Length = 488
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 301 cagcagcagcaacagcaac 283
>gb|BF263807.1|BF263807 HV_CEa0007L16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007L16f, mRNA sequence
Length = 783
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 358 ccagcagcagcaacagcaa 376
>gb|AV909257.1|AV909257 AV909257 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12d01 5', mRNA sequence
Length = 338
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 13 ccagcagcagcaacagcaa 31
>gb|AV911143.1|AV911143 AV911143 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12d01 3', mRNA sequence
Length = 621
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 612 ccagcagcagcaacagcaa 594
>gb|AV917397.1|AV917397 AV917397 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18l24 5', mRNA sequence
Length = 750
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 711 cagcagcagcaacagcaac 729
>gb|AV922575.1|AV922575 AV922575 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18l24 3', mRNA sequence
Length = 688
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 306 cagcagcagcaacagcaac 288
>gb|AV927965.1|AV927965 AV927965 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13h07 3', mRNA sequence
Length = 658
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 436 cagcagcagcaacagcaac 418
>gb|AV929911.1|AV929911 AV929911 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17a24 3', mRNA sequence
Length = 478
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 436 cagcagcagcaacagcaac 418
>gb|BQ468055.1|BQ468055 HR01M22r HR Hordeum vulgare subsp. vulgare cDNA clone HR01M22
5-PRIME, mRNA sequence
Length = 507
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 106 cagcagcagcaacagcaac 124
>gb|BQ661345.1|BQ661345 HM03B15u HM Hordeum vulgare subsp. vulgare cDNA clone HM03B15
3-PRIME, mRNA sequence
Length = 555
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 523 cagcagcagcaacagcaac 505
>gb|BQ765855.1|BQ765855 EBro03_SQ008_I10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_I10 5', mRNA sequence
Length = 437
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 315 cagcagcagcaacagcaac 333
>gb|BQ767809.1|BQ767809 EBro08_SQ009_L22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_L22 5', mRNA sequence
Length = 619
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 112 cagcagcagcaacagcaac 130
>gb|BQ768522.1|BQ768522 EBro08_SQ011_O20_R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_O20 5', mRNA sequence
Length = 546
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 75 cagcagcagcaacagcaac 93
>gb|BU985131.1|BU985131 HF06D17r HF Hordeum vulgare subsp. vulgare cDNA clone HF06D17
5-PRIME, mRNA sequence
Length = 503
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 304 cagcagcagcaacagcaac 322
>gb|CA006015.1|CA006015 HU05O05u HU Hordeum vulgare subsp. vulgare cDNA clone HU05O05
3-PRIME, mRNA sequence
Length = 481
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 449 cagcagcagcaacagcaac 431
>gb|CA022093.1|CA022093 HZ42C09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42C09
5-PRIME, mRNA sequence
Length = 645
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 27 ccagcagcagcaacagcaa 45
>gb|CB859122.1|CB859122 HI09G17w HI Hordeum vulgare subsp. vulgare cDNA clone HI09G17
3-PRIME, mRNA sequence
Length = 565
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 83 ggccggccgtggaaggagt 101
|||||||||||||||||||
Sbjct: 370 ggccggccgtggaaggagt 352
>gb|CB859686.1|CB859686 HI11E03w HI Hordeum vulgare subsp. vulgare cDNA clone HI11E03
3-PRIME, mRNA sequence
Length = 526
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 467 cagcagcagcaacagcaac 449
>gb|CB859989.1|CB859989 HI12E03w HI Hordeum vulgare subsp. vulgare cDNA clone HI12E03
3-PRIME, mRNA sequence
Length = 521
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 83 ggccggccgtggaaggagt 101
|||||||||||||||||||
Sbjct: 371 ggccggccgtggaaggagt 353
>gb|CB876853.1|CB876853 HP02K02T HP Hordeum vulgare subsp. vulgare cDNA clone HP02K02
5-PRIME, mRNA sequence
Length = 559
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 325 cagcagcagcaacagcaac 343
>gb|CD662731.1|CD662731 UCRHV18_02dg09_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02dg09, mRNA sequence
Length = 710
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 472 cagcagcagcaacagcaac 454
>gb|CK122193.1|CK122193 BES1824101p15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P151 5-PRIME, mRNA sequence
Length = 641
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 83 ggccggccgtggaaggagt 101
|||||||||||||||||||
Sbjct: 599 ggccggccgtggaaggagt 617
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,557
Number of Sequences: 312970
Number of extensions: 90557
Number of successful extensions: 31259
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31221
Number of HSP's gapped (non-prelim): 38
length of query: 571
length of database: 175,134,539
effective HSP length: 19
effective length of query: 552
effective length of database: 169,188,109
effective search space: 93391836168
effective search space used: 93391836168
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)