BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696743.2.1
(977 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. v... 504 e-141
gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa... 371 e-101
gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedl... 369 e-100
gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. v... 333 6e-090
gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA li... 319 1e-085
gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. v... 319 1e-085
gb|BE196054.2|BE196054 HVSMEh0091D21f Hordeum vulgare 5-45 ... 281 2e-074
gb|BF265852.2|BF265852 HV_CEa0013I03f Hordeum vulgare seedl... 281 2e-074
gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA li... 278 3e-073
gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA li... 260 8e-068
gb|BG417425.2|BG417425 HVSMEk0017E11f Hordeum vulgare testa... 234 4e-060
gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. v... 228 3e-058
gb|BU975928.1|BU975928 HB32L19r BC Hordeum vulgare subsp. v... 186 9e-046
gb|CA030641.1|CA030641 HX07K22r HX Hordeum vulgare subsp. v... 163 1e-038
gb|CA028206.1|CA028206 HZ61F01r HZ Hordeum vulgare subsp. v... 157 8e-037
gb|BQ663666.1|BQ663666 HU03I11u HU Hordeum vulgare subsp. v... 141 5e-032
gb|BU978254.1|BU978254 HA12N07r HA Hordeum vulgare subsp. v... 129 2e-028
gb|CK122310.1|CK122310 BES1824102n07 BES1824 Hordeum vulgar... 125 3e-027
gb|BG414215.1|BG414215 HVSMEk0001E02f Hordeum vulgare testa... 117 7e-025
gb|BJ457634.1|BJ457634 BJ457634 K. Sato unpublished cDNA li... 115 3e-024
gb|BG417650.1|BG417650 HVSMEk0019A03f Hordeum vulgare testa... 107 7e-022
gb|BJ458585.1|BJ458585 BJ458585 K. Sato unpublished cDNA li... 96 3e-018
gb|BJ450210.1|BJ450210 BJ450210 K. Sato unpublished cDNA li... 94 1e-017
gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. v... 92 4e-017
gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, ... 80 2e-013
gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. v... 80 2e-013
gb|AL511938.1|AL511938 AL511938 Hordeum vulgare Barke devel... 76 2e-012
gb|BU978255.1|BU978255 HA12N07u HA Hordeum vulgare subsp. v... 74 1e-011
gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. v... 72 4e-011
gb|AL501384.1|AL501384 AL501384 Hordeum vulgare Barke roots... 68 6e-010
gb|BG343249.1|BG343249 HVSMEg0005D14f Hordeum vulgare pre-a... 68 6e-010
gb|BM101164.2|BM101164 EBpi01_SQ003_B06_R pistil, 1 DPA, no... 62 4e-008
gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA li... 56 2e-006
gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA li... 46 0.002
>gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
5-PRIME, mRNA sequence
Length = 624
Score = 504 bits (254), Expect = e-141
Identities = 437/498 (87%)
Strand = Plus / Minus
Query: 381 gcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagctcgg 440
|||||||||||||| || |||||||| || || ||||||||||| |||||||| |||
Sbjct: 508 gcaccgctcgccacggacccgctgtcggaggtgtccggctccatgtagaaccgagcccgg 449
Query: 441 aaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacctg 500
|||||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| |
Sbjct: 448 aaggctgccagatgggcatagtatgcaggaggaacaatcgatacagagcgggtgcatcga 389
Query: 501 gcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttc 560
||||||||||| |||| |||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct: 388 gcatacgtgtagcacaggttgtttgtgagagtttgcaactcatcagcagtaaatttgttc 329
Query: 561 tcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctg 620
|| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 328 tcgtcccagagaacatgatagtgggcaggccggcttgttccctgaatgccagcatggcta 269
Query: 621 cacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgcccggc 680
|||| ||||||||| || || || |||||||| ||||| || || || || ||||| |||
Sbjct: 268 cacaagtagaaatcgaattctgtcggatggcagatcttcgaatcaacaacggtgccaggc 209
Query: 681 agtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaacctg 740
|||||||| || ||||||||| ||| |||||||||||||||||| ||| |||| | |||
Sbjct: 208 agtatgttcccgcttctatcgacagtacgctgatcattgtgattgttagcaaaaagccta 149
Query: 741 gtgtgatgacgcttctggaccacgacaaaagtaactggaggctggtaatcagactccaat 800
||||| |||||||||||||| || |||||||||||||||||||| |||| | ||||||
Sbjct: 148 gtgtggtgacgcttctggacaaccacaaaagtaactggaggctgataatttggctccaag 89
Query: 801 gatgcacaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccc 860
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 88 gatgcacaggccttcctaatggcatcaagttcaaacaacagaacttggtagaactgtccc 29
Query: 861 tcactgacaccatccctg 878
|| |||||||||||||||
Sbjct: 28 tcgctgacaccatccctg 11
Score = 71.9 bits (36), Expect = 4e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
|||||||||| |||||||||||||| ||||||||||||||||| || | ||||| ||||
Sbjct: 624 cttagcagtaaaacatgacgcgcttgacgttttccttgagggcggggagaggcctgacag 565
Query: 319 caac 322
||||
Sbjct: 564 caac 561
>gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009F13f, mRNA sequence
Length = 970
Score = 371 bits (187), Expect = e-101
Identities = 343/395 (86%)
Strand = Plus / Minus
Query: 381 gcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagctcgg 440
|||||||||||||| || |||||||| || || ||||||||||| |||||||| |||
Sbjct: 395 gcaccgctcgccacggacccgctgtcggaggtgtccggctccatgtagaaccgagcccgg 336
Query: 441 aaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacctg 500
|||||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| |
Sbjct: 335 aaggctgccagatgggcatagtatgcaggaggaacaatcgatacagagcgggtgcatcga 276
Query: 501 gcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttc 560
||||||||||| |||| |||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct: 275 gcatacgtgtagcacaggttgtttgtgagagtttgcaactcatcagcagtaaatttgttc 216
Query: 561 tcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctg 620
|| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 215 tcgtcccagagaacatgatagtgggcaggccggcttgttccctgaatgccagcatggcta 156
Query: 621 cacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgcccggc 680
|||| ||||||||| || || || |||||||| ||||| || || || || ||||| |||
Sbjct: 155 cacaagtagaaatcgaattctgtcggatggcagatcttcgaatcaacaacggtgccaggc 96
Query: 681 agtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaacctg 740
|||||||| || ||||||||| ||| |||||||||||||||||| ||| |||| | |||
Sbjct: 95 agtatgttcccgcttctatcgacagtacgctgatcattgtgattgttagcaaaaagccta 36
Query: 741 gtgtgatgacgcttctggaccacgacaaaagtaac 775
||||| |||||||||||||| || |||||||||||
Sbjct: 35 gtgtggtgacgcttctggacaaccacaaaagtaac 1
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 257 atcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcac 316
|||||||||||| |||||||||||||| ||||||||||||||||| || | ||||| ||
Sbjct: 514 atcttagcagtaaaacatgacgcgcttgacgttttccttgagggcggggagaggcctgac 455
Query: 317 agcaac 322
||||||
Sbjct: 454 agcaac 449
>gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006I15f, mRNA sequence
Length = 679
Score = 369 bits (186), Expect = e-100
Identities = 385/450 (85%), Gaps = 1/450 (0%)
Strand = Plus / Minus
Query: 528 agagtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggca 587
||||||||||| ||||||| || || ||||| |||||||| || || ||||||| |||
Sbjct: 537 agagtttgcaattcatcagcagtgaacttgttttcatcccatagtacgtgataattagca 478
Query: 588 ggacggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttgga 647
|| ||||||||||||||||||||||| ||| | |||| |||||||||||||||||| |||
Sbjct: 477 ggccggcttgttccctgaatgccagcgtggttacacaagtagaaatcaaactcggtcgga 418
Query: 648 tggcaaatctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagca 707
|||||||||||||| || || |||||||| ||||||||||| || |||||||| ||| |
Sbjct: 417 tggcaaatctttgaatcaacaacagtgccaggcagtatgtttccgcttctatcaacagta 358
Query: 708 cgctgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgaca 767
|| ||||||||||| |||||| |||| | |||||||||||| ||||||||||| || |||
Sbjct: 357 cgttgatcattgtggttattagcaaaaagcctggtgtgatgccgcttctggacaactaca 298
Query: 768 aaagtaactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatca 827
||||||||||| |||||||||| | |||||| || ||||| ||||||||||||||||||
Sbjct: 297 aaagtaactgggggctggtaattgggctccaaggacgcacatgcctttctaatggcatca 238
Query: 828 agttcgtacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatg 887
||||| |||| |||||||| |||||||| ||||| |||||||||||| |||| ||||||
Sbjct: 237 agttcatacagaagaacttgatagaactggccctcgctgacaccatccttgtaaaatatg 178
Query: 888 atcctcttgggtttttgtccagtcgccctccagaaagaaatgagaaggttccctaatcat 947
|| |||| |||||| ||||| || |||||| ||||||||||||||| | | | |||||
Sbjct: 177 attctctggggtttctgtccggttgccctcttgaaagaaatgagaagct-ctttgatcat 119
Query: 948 gccaccagagacagtccccctttggggatc 977
|||||||| ||||| || |||||||||||
Sbjct: 118 gccaccagtcacagttcctctttggggatc 89
>gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
3-PRIME, mRNA sequence
Length = 645
Score = 333 bits (168), Expect = 6e-090
Identities = 300/344 (87%)
Strand = Plus / Plus
Query: 381 gcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagctcgg 440
|||||||||||||| || |||||||| || || ||||||||||| |||||||| |||
Sbjct: 301 gcaccgctcgccacggacccgctgtcggaggtgtccggctccatgtagaaccgagcccgg 360
Query: 441 aaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacctg 500
|||||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| |
Sbjct: 361 aaggctgccagatgggcatagtatgcaggaggaacaatcgatacagagcgggtgcatcga 420
Query: 501 gcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttc 560
||||||||||| |||| |||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct: 421 gcatacgtgtagcacaggttgtttgtgagagtttgcaactcatcagcagtaaatttgttc 480
Query: 561 tcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctg 620
|| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 481 tcgtcccagagaacatgatagtgggcaggccggcttgttccctgaatgccagcatggcta 540
Query: 621 cacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgcccggc 680
|||| ||||||||| || || || |||||||| ||||| || || || || ||||| |||
Sbjct: 541 cacaagtagaaatcgaattctgtcggatggcagatcttcgaatcaacaacggtgccaggc 600
Query: 681 agtatgttgccacttctatcggcagcacgctgatcattgtgatt 724
|||||||| || ||||||||| ||| ||||||||||||||||||
Sbjct: 601 agtatgttcccgcttctatcgacagtacgctgatcattgtgatt 644
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 257 atcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcac 316
|||||||||||| |||||||||||||| ||||||||||||||||| || | ||||| ||
Sbjct: 183 atcttagcagtaaaacatgacgcgcttgacgttttccttgagggcggggagaggcctgac 242
Query: 317 agcaac 322
||||||
Sbjct: 243 agcaac 248
>gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f16 3', mRNA sequence
Length = 588
Score = 319 bits (161), Expect = 1e-085
Identities = 293/337 (86%)
Strand = Plus / Plus
Query: 381 gcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagctcgg 440
|||||||||||||| || |||||||| || || ||||||||||| |||||||| |||
Sbjct: 252 gcaccgctcgccacggacccgctgtcggaggtgtccggctccatgtagaaccgagcccgg 311
Query: 441 aaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacctg 500
|||||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| |
Sbjct: 312 aaggctgccagatgggcatagtatgcaggaggaacaatcgatacagagcgggtgcatcga 371
Query: 501 gcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttc 560
||||||||||| |||| |||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct: 372 gcatacgtgtagcacaggttgtttgtgagagtttgcaactcatcagcagtaaatttgttc 431
Query: 561 tcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctg 620
|| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 432 tcgtcccagagaacatgatagtgggcaggccggcttgttccctgaatgccagcatggcta 491
Query: 621 cacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgcccggc 680
|||| ||||||||| || || || |||||||| ||||| || || || || ||||| |||
Sbjct: 492 cacaagtagaaatcgaattctgtcggatggcagatcttcgaatcaacaacggtgccaggc 551
Query: 681 agtatgttgccacttctatcggcagcacgctgatcat 717
|||||||| || ||||||||| ||| |||||||||||
Sbjct: 552 agtatgttcccgcttctatcgacagtacgctgatcat 588
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 257 atcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcac 316
|||||||||||| |||||||||||||| ||||||||||||||||| || | ||||| ||
Sbjct: 134 atcttagcagtaaaacatgacgcgcttgacgttttccttgagggcggggagaggcctgac 193
Query: 317 agcaac 322
||||||
Sbjct: 194 agcaac 199
>gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. vulgare cDNA clone HX06D16
3-PRIME, mRNA sequence
Length = 635
Score = 319 bits (161), Expect = 1e-085
Identities = 268/304 (88%)
Strand = Plus / Plus
Query: 417 ggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacg 476
|||||||||||||||||||| ||||||||||||| ||| ||||| ||||| ||||| ||
Sbjct: 332 ggctccatgtaaaaccgagcccggaaggctgccaaatgtgcataatatgctggaggcaca 391
Query: 477 attgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgc 536
|||||||| ||||| |||||||| ||||||||||| ||||||||||| || |||||||||
Sbjct: 392 attgatacagagcgggtgcacctagcatacgtgtagcacaagttgtttgttagagtttgc 451
Query: 537 aacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacggctt 596
||| ||||||| || || |||||||||||||| || || |||||||| ||||||||||||
Sbjct: 452 aactcatcagcagtgaacttgttctcatcccatagtacgtgataatgagcaggacggctt 511
Query: 597 gttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatc 656
||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||
Sbjct: 512 gttccctgaatgccagcgtggctacacaagtagaaatcaaactcggtcggatggcaaatc 571
Query: 657 tttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgctgatca 716
||||| || || |||||||| |||||||||| || |||||||| ||| ||| ||||||
Sbjct: 572 tttgaatcaacaacagtgccaggcagtatgtntccgcttctatcaacagtacgttgatca 631
Query: 717 ttgt 720
||||
Sbjct: 632 ttgt 635
Score = 61.9 bits (31), Expect = 4e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
|||| ||||| |||||||| ||||||||||||||||| ||||| || | ||||| ||||
Sbjct: 186 cttaacagtaaaacatgacacgcttcacgttttccttcagggcggggaggggcctgacag 245
Query: 319 caacatt 325
|||||||
Sbjct: 246 caacatt 252
>gb|BE196054.2|BE196054 HVSMEh0091D21f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091D21f, mRNA sequence
Length = 914
Score = 281 bits (142), Expect = 2e-074
Identities = 319/374 (85%), Gaps = 3/374 (0%)
Strand = Plus / Minus
Query: 605 aatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtc 664
||||| ||| ||||| |||| |||||||||||||||| | ||||| ||||||||||| |
Sbjct: 525 aatgcaagcgtggctacacaagtagaaatcaaactcgttcggatgccaaatctttgaa-c 467
Query: 665 caccac-agtgcccggcagtatgttgccacttctatcggcagcacgctgatcattgtgat 723
|||||| |||||| ||||||||||| || |||||||| ||| ||| ||||||||||| |
Sbjct: 466 caccaccagtgccaggcagtatgtttccgcttctatcaccagtacgttgatcattgtggt 407
Query: 724 tattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaagtaactggaggct 783
||||| |||| | | |||||||||| ||||||||||| || |||||||||||||| ||||
Sbjct: 406 tattagcaaaaagcttggtgtgatgccgcttctggacaactacaaaagtaactgggggct 347
Query: 784 ggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcgtacaacagaa 843
|||||| | |||||| || ||||| ||||||||||||||||||||||| ||| ||||
Sbjct: 346 ggtaattgggctccaaggacgcacatgcctttctaatggcatcaagttcataccgaagaa 287
Query: 844 cttggtagaactgtccctcactgacaccatccctgtagaatatgatcctcttgggttttt 903
|||| |||||||| ||||| ||||||||||||||||| |||||||| |||| |||||| |
Sbjct: 286 cttgatagaactggccctcgctgacaccatccctgtaaaatatgattctctggggtttct 227
Query: 904 gtccagtcgccctccagaaagaaatgagaaggttccctaatcatgccaccagagacagtc 963
|||| || |||||| |||||||||||||| | ||| | ||||||||||||| |||||
Sbjct: 226 gtccggttgccctcttgaaagaaatgagaa-gctccttgatcatgccaccagtcacagtt 168
Query: 964 cccctttggggatc 977
|| |||||||||||
Sbjct: 167 cctctttggggatc 154
>gb|BF265852.2|BF265852 HV_CEa0013I03f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013I03f, mRNA sequence
Length = 751
Score = 281 bits (142), Expect = 2e-074
Identities = 318/374 (85%), Gaps = 2/374 (0%)
Strand = Plus / Minus
Query: 605 aatgccagcatggctgcacaggtagaaatcaaactcggttgg-atggcaaatctttgagt 663
||||| ||| ||||| |||| |||||| |||| |||||||| ||||||||||||||| |
Sbjct: 749 aatgcaagcgtggctacacaagtagaatccaaaatcggttgggatggcaaatctttgaat 690
Query: 664 ccaccacagtgcccggcagtatgttgccacttctatcggcagcacgctgatcattgtgat 723
| || ||||| || ||||||||||| || |||||||| ||| ||| ||||||||||| |
Sbjct: 689 caacaacagttccaggcagtatgtttccgcttctatcaacagtacggtgatcattgtggt 630
Query: 724 tattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaagtaactggaggct 783
||||| |||| | |||||||||||| ||||||||||| || |||||||||||||| || |
Sbjct: 629 tattagcaaaaagcctggtgtgatgccgcttctggacaactacaaaagtaactgggggtt 570
Query: 784 ggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcgtacaacagaa 843
|||||| | |||||| || ||||| ||||||||||||||||||||||| |||| ||||
Sbjct: 569 ggtaattgggctccaaggacgcacatgcctttctaatggcatcaagttcatacagaagaa 510
Query: 844 cttggtagaactgtccctcactgacaccatccctgtagaatatgatcctcttgggttttt 903
|||| |||||||| ||||| ||||||||||||||||| |||||||| |||| |||||| |
Sbjct: 509 cttgatagaactggccctcgctgacaccatccctgtaaaatatgattctctggggtttct 450
Query: 904 gtccagtcgccctccagaaagaaatgagaaggttccctaatcatgccaccagagacagtc 963
|||| || |||||| |||||||||||||| | ||| | ||||||||||||| |||||
Sbjct: 449 gtccggttgccctcttgaaagaaatgagaa-gctccttgatcatgccaccagtcacagtt 391
Query: 964 cccctttggggatc 977
|| |||||||||||
Sbjct: 390 cctctttggggatc 377
>gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39l05 3', mRNA sequence
Length = 673
Score = 278 bits (140), Expect = 3e-073
Identities = 239/272 (87%)
Strand = Plus / Plus
Query: 381 gcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagctcgg 440
|||||||||||||| || |||||||| || || ||||||||||| |||||||| |||
Sbjct: 400 gcaccgctcgccacggacccgctgtcggaggtgtccggctccatgtagaaccgagcccgg 459
Query: 441 aaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacctg 500
|||||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| |
Sbjct: 460 aaggctgccagatgggcatagtatgcaggaggaacaatcgatacagagcgggtgcatcga 519
Query: 501 gcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttc 560
||||||||||| |||| |||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct: 520 gcatacgtgtagcacaggttgtttgtgagagtttgcaactcatcagcagtaaatttgttc 579
Query: 561 tcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctg 620
|| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 580 tcgtcccagagaacatgatagtgggcaggccggcttgttccctgaatgccagcatggcta 639
Query: 621 cacaggtagaaatcaaactcggttggatggca 652
|||| ||||||||| || || || ||||||||
Sbjct: 640 cacaagtagaaatcgaattctgtcggatggca 671
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 257 atcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcac 316
|||||||||||| |||||||||||||| ||||||||||||||||| || | ||||| ||
Sbjct: 282 atcttagcagtaaaacatgacgcgcttgacgttttccttgagggcggggagaggcctgac 341
Query: 317 agcaac 322
||||||
Sbjct: 342 agcaac 347
>gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 5', mRNA sequence
Length = 576
Score = 260 bits (131), Expect = 8e-068
Identities = 376/457 (82%), Gaps = 3/457 (0%)
Strand = Plus / Minus
Query: 420 tccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgatt 479
|||||||| ||||||||||| || || || || |||||||||||||| ||||| || ||
Sbjct: 464 tccatgtagaaccgagctcgaaaagccgcgaggtgagcatagtatgccggaggcacaatc 405
Query: 480 gatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgcaac 539
||||| || || |||||||| || || ||||| |||| |||||| |||||||| |||||
Sbjct: 404 gatacagaacgggtgcaccttgcgtaggtgtagcacaggttgttcgtgagagtctgcaaa 345
Query: 540 ccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacggcttgtt 599
||||| || ||||| |||||||||||||| || ||||| ||||| ||||| |||||||||
Sbjct: 344 ccatccgcggtaaaattgttctcatcccaaaggacatggtaatgcgcagggcggcttgtt 285
Query: 600 ccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatcttt 659
|||||||| ||||||||||| || ||||||||||| ||||| || |||||||| ||||||
Sbjct: 284 ccctgaataccagcatggctacaaaggtagaaatcgaactcagtaggatggcatatcttt 225
Query: 660 gagtccaccacagtgcccggcagtatgttgccac---ttctatcggcagcacgctgatca 716
|| || || || || || ||||||||||| |||| ||||||| || ||||||||
Sbjct: 224 gaatcaacgacggtaccaggcagtatgtttccactttttctatcaacacttcgctgatcg 165
Query: 717 ttgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaagtaact 776
||||| || || |||| | || || ||||| || ||||||||||| ||||| |||||
Sbjct: 164 ttgtggttgttggcaaatagccgtgtatgatggcgtttctggaccaccacaaatgtaacg 105
Query: 777 ggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcgtac 836
|| ||||| |||| | |||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 104 ggtggctgataattgggctccaaggatgcgcaggcctttctaatcgcatcaagctcatac 45
Query: 837 aacagaacttggtagaactgtccctcactgacaccat 873
|||||||| || ||||||||||| || || |||||||
Sbjct: 44 aacagaacctgatagaactgtccttcgctaacaccat 8
>gb|BG417425.2|BG417425 HVSMEk0017E11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017E11f, mRNA sequence
Length = 689
Score = 234 bits (118), Expect = 4e-060
Identities = 233/270 (86%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 708 cgctgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgaca 767
||||||||||||||||| ||| |||| | ||| ||||| |||||||||||||| || |||
Sbjct: 689 cgctgatcattgtgattgttagcaaaaagcctagtgtggtgacgcttctggacaaccaca 630
Query: 768 aaagtaactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatca 827
|||||||||||||| || |||| | |||||| |||||||||||||| ||||||||||||
Sbjct: 629 aaagtaactggaggttgataatttggctccaaggatgcacaggccttcctaatggcatca 570
Query: 828 agttcgtacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatg 887
||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 569 agttcaaacaacagaacttggtagaactgtccctcgctgacaccatccctgtaaaatatg 510
Query: 888 atcctcttgggtttttgtccagtcgccctccagaaagaaatgagaaggttccctaatcat 947
|| |||| ||||| || ||||| |||||| |||||| ||||||| | ||| | |||||
Sbjct: 509 attctctgaggtttctgcccagttgccctcttgaaagatatgagaa-gctccttgatcat 451
Query: 948 gccaccagagacagtccccctttggggatc 977
||| |||| ||||| || |||||||||||
Sbjct: 450 gccgccagtcacagttcctctttggggatc 421
>gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. vulgare cDNA clone HX07K22
3-PRIME, mRNA sequence
Length = 603
Score = 228 bits (115), Expect = 3e-058
Identities = 181/203 (89%)
Strand = Plus / Plus
Query: 417 ggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacg 476
|||||||||||||||||||| ||||||||||||| ||| ||||| ||||| ||||| ||
Sbjct: 399 ggctccatgtaaaaccgagcccggaaggctgccaaatgtgcataatatgctggaggcaca 458
Query: 477 attgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgc 536
|||||||| ||||| |||||||| ||||||||||| ||||||||||| || |||||||||
Sbjct: 459 attgatacagagcgggtgcacctagcatacgtgtagcacaagttgtttgttagagtttgc 518
Query: 537 aacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacggctt 596
||| ||||||| || || |||||||||||||| || || |||||||| ||||||||||||
Sbjct: 519 aactcatcagcagtgaacttgttctcatcccatagtacgtgataatgagcaggacggctt 578
Query: 597 gttccctgaatgccagcatggct 619
||||||||||||||||| |||||
Sbjct: 579 gttccctgaatgccagcgtggct 601
Score = 61.9 bits (31), Expect = 4e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
|||| ||||| |||||||| ||||||||||||||||| ||||| || | ||||| ||||
Sbjct: 253 cttaacagtaaaacatgacacgcttcacgttttccttcagggcggggaggggcctgacag 312
Query: 319 caacatt 325
|||||||
Sbjct: 313 caacatt 319
>gb|BU975928.1|BU975928 HB32L19r BC Hordeum vulgare subsp. vulgare cDNA clone HB32L19
5-PRIME, mRNA sequence
Length = 456
Score = 186 bits (94), Expect = 9e-046
Identities = 182/210 (86%), Gaps = 1/210 (0%)
Strand = Plus / Minus
Query: 768 aaagtaactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatca 827
||||||||||||||||| |||| | |||||| |||||||||||||| ||||||||||||
Sbjct: 456 aaagtaactggaggctgataatttggctccaaggatgcacaggccttcctaatggcatca 397
Query: 828 agttcgtacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatg 887
||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 396 agttcaaacaacagaacttggtagaactgtccctcgctgacaccatccctgtaaaatatg 337
Query: 888 atcctcttgggtttttgtccagtcgccctccagaaagaaatgagaaggttccctaatcat 947
|| |||| ||||| || ||||| |||||| |||||| ||||||| | ||| | |||||
Sbjct: 336 attctctgaggtttctgcccagttgccctcttgaaagatatgagaa-gctccttgatcat 278
Query: 948 gccaccagagacagtccccctttggggatc 977
||| |||| ||||| || |||||||||||
Sbjct: 277 gccgccagtcacagttcctctttggggatc 248
>gb|CA030641.1|CA030641 HX07K22r HX Hordeum vulgare subsp. vulgare cDNA clone HX07K22
5-PRIME, mRNA sequence
Length = 621
Score = 163 bits (82), Expect = 1e-038
Identities = 170/198 (85%), Gaps = 1/198 (0%)
Strand = Plus / Minus
Query: 780 ggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcgtacaac 839
|||||||||| | |||||| || ||||| ||||||||||||||||||||||| ||||
Sbjct: 618 ggctggtaattgggctccaaggacgcacatgcctttctaatggcatcaagttcatacaga 559
Query: 840 agaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcctcttgggt 899
|||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||| ||||
Sbjct: 558 agaacttgatagaactggccctcgctgacaccatccctgtaaaatatgattctctggggt 499
Query: 900 ttttgtccagtcgccctccagaaagaaatgagaaggttccctaatcatgccaccagagac 959
|| ||||| || |||||| |||||||||||||| | ||| | ||||||||||||| ||
Sbjct: 498 ttctgtccggttgccctcttgaaagaaatgagaa-gctccttgatcatgccaccagtcac 440
Query: 960 agtccccctttggggatc 977
||| || |||||||||||
Sbjct: 439 agttcctctttggggatc 422
>gb|CA028206.1|CA028206 HZ61F01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61F01
5-PRIME, mRNA sequence
Length = 468
Score = 157 bits (79), Expect = 8e-037
Identities = 145/167 (86%)
Strand = Plus / Minus
Query: 381 gcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagctcgg 440
|||||||||||||| || |||||||| || || ||||||||||| |||||||| |||
Sbjct: 167 gcaccgctcgccacggacccgctgtcggaggtgtccggctccatgtagaaccgagcccgg 108
Query: 441 aaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacctg 500
|||||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| |
Sbjct: 107 aaggctgccagatgggcatagtatgcaggaggaacaatcgatacagagcgggtgcatcga 48
Query: 501 gcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagc 547
||||||||||| |||| |||||| ||||||||||||||| |||||||
Sbjct: 47 gcatacgtgtagcacaggttgtttgtgagagtttgcaactcatcagc 1
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 257 atcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcac 316
|||||||||||| |||||||||||||| ||||||||||||||||| || | ||||| ||
Sbjct: 285 atcttagcagtaaaacatgacgcgcttgacgttttccttgagggcggggagaggcctgac 226
Query: 317 agcaac 322
||||||
Sbjct: 225 agcaac 220
>gb|BQ663666.1|BQ663666 HU03I11u HU Hordeum vulgare subsp. vulgare cDNA clone HU03I11
3-PRIME, mRNA sequence
Length = 562
Score = 141 bits (71), Expect = 5e-032
Identities = 177/211 (83%), Gaps = 6/211 (2%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||||| |||| ||||||| ||||| | |||||||||||||| ||||| ||||| |||
Sbjct: 300 gtatctgtctccgtgtaaaatcgagcccaaaaggctgccagatgtgcataatatgctgga 359
Query: 471 ggaacgattgatactgagcgtgtgcacctggcat-----acgtgtaacacaagttgttgg 525
|||||||| ||||| ||||| ||| ||| |||| ||||||| ||| |||||||
Sbjct: 360 ggaacgatcgatacagagcggatgcgcctagcattcgttacgtgtagcacgagttgtttt 419
Query: 526 tgagagtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatg-g 584
|| ||||||||||| ||||||| |||||||||||||| | |||||||||| |||||||
Sbjct: 420 tgggagtttgcaactcatcagcggtaaatttgttctcgttccacagaacaagataatgaa 479
Query: 585 gcaggacggcttgttccctgaatgccagcat 615
||||| ||||||||||||||||||||||||
Sbjct: 480 gcaggctggcttgttccctgaatgccagcat 510
>gb|BU978254.1|BU978254 HA12N07r HA Hordeum vulgare subsp. vulgare cDNA clone HA12N07
5-PRIME, mRNA sequence
Length = 493
Score = 129 bits (65), Expect = 2e-028
Identities = 135/157 (85%), Gaps = 1/157 (0%)
Strand = Plus / Minus
Query: 821 ggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctgta 880
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 493 ggcatcaagttcaaacaacagaacttggtagaactgtccctcgctgacaccatccctgta 434
Query: 881 gaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaaggttccc 940
|||||||| |||| ||||| || ||||| |||||| |||||| ||||||| | |||
Sbjct: 433 aaatatgattctctgaggtttctgcccagttgccctcttgaaagatatgagaa-gctcct 375
Query: 941 taatcatgccaccagagacagtccccctttggggatc 977
| |||||||| |||| ||||| || |||||||||||
Sbjct: 374 tgatcatgccgccagtcacagttcctctttggggatc 338
>gb|CK122310.1|CK122310 BES1824102n07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N072 5-PRIME, mRNA sequence
Length = 614
Score = 125 bits (63), Expect = 3e-027
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 381 gcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagctcgg 440
|||||||||||||| || |||||||| || || ||||||||||| |||||||| |||
Sbjct: 144 gcaccgctcgccacggacccgctgtcggaggtgtccggctccatgtagaaccgagcccgg 85
Query: 441 aaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacctg 500
|||||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| |
Sbjct: 84 aaggctgccagatgggcatagtatgcaggaggaacaatcgatacagagcgggtgcatcga 25
Query: 501 gcatacgtgtaacacaagttgtt 523
||||||||||| |||| ||||||
Sbjct: 24 gcatacgtgtagcacaggttgtt 2
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 257 atcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcac 316
|||||||||||| |||||||||||||| ||||||||||||||||| || | ||||| ||
Sbjct: 262 atcttagcagtaaaacatgacgcgcttgacgttttccttgagggcggggagaggcctgac 203
Query: 317 agcaac 322
||||||
Sbjct: 202 agcaac 197
>gb|BG414215.1|BG414215 HVSMEk0001E02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0001E02f, mRNA sequence
Length = 563
Score = 117 bits (59), Expect = 7e-025
Identities = 123/143 (86%), Gaps = 1/143 (0%)
Strand = Plus / Minus
Query: 835 acaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcctct 894
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 561 acaacagaacttggtagaactgtccctcgctgacaccatccctgtaaaatatgattctct 502
Query: 895 tgggtttttgtccagtcgccctccagaaagaaatgagaaggttccctaatcatgccacca 954
||||| || ||||| |||||| |||||| ||||||| | ||| | |||||||| |||
Sbjct: 501 gaggtttctgcccagttgccctcttgaaagatatgagaa-gctccttgatcatgccgcca 443
Query: 955 gagacagtccccctttggggatc 977
| ||||| || |||||||||||
Sbjct: 442 gtcacagttcctctttggggatc 420
>gb|BJ457634.1|BJ457634 BJ457634 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28j10 3', mRNA sequence
Length = 463
Score = 115 bits (58), Expect = 3e-024
Identities = 181/222 (81%)
Strand = Plus / Plus
Query: 362 agggccacggcttgtcgtagcaccgctcgccacagatccgctgtcacttgtatctggctc 421
||||||||||| |||||| ||||| ||||| || || || | ||| ||||| || ||
Sbjct: 238 agggccacggcctgtcgtggcaccactcgcgaccgagccaccgtcggaggtatccggttc 297
Query: 422 catgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgattga 481
|||||| ||||||||||| || || || || |||||||||||||| ||||| || || ||
Sbjct: 298 catgtagaaccgagctcgaaaagccgcgaggtgagcatagtatgccggaggcacaatcga 357
Query: 482 tactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgcaaccc 541
||| || || |||||||| || || ||||| |||| |||||| |||||||| ||||| ||
Sbjct: 358 tacagaacgggtgcaccttgcgtaggtgtagcacaggttgttcgtgagagtctgcaaacc 417
Query: 542 atcagccgtaaatttgttctcatcccacagaacatgataatg 583
||| || ||||| |||||||||||||| || ||||| |||||
Sbjct: 418 atccgcggtaaaattgttctcatcccaaaggacatggtaatg 459
Score = 40.1 bits (20), Expect = 0.13
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| || |||||||||| |||||| |||| | ||| | |||||||
Sbjct: 141 agcagtaaaacatgacacgtttcacgttttagttgaggtcaggcagaggcttaacagcaa 200
Query: 322 catt 325
||||
Sbjct: 201 catt 204
>gb|BG417650.1|BG417650 HVSMEk0019A03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019A03f, mRNA sequence
Length = 785
Score = 107 bits (54), Expect = 7e-022
Identities = 145/174 (83%), Gaps = 1/174 (0%)
Strand = Plus / Minus
Query: 804 gcacaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctca 863
||||| |||||| |||||||||||||||| ||| |||| ||| |||| || || ||
Sbjct: 327 gcacatgcctttataatggcatcaagttcagacagaagaaattgatagatgtggccatcg 268
Query: 864 ctgacaccatccctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaa 923
||||||||||||||||| |||||||| |||| |||||| ||||| || |||||| ||||
Sbjct: 267 ctgacaccatccctgtaaaatatgattctctggggtttctgtccggttgccctcttgaaa 208
Query: 924 gaaatgagaaggttccctaatcatgccaccagagacagtccccctttggggatc 977
|||||||||| | ||| | ||||||||||||| ||||| || |||||||||||
Sbjct: 207 gaaatgagaa-gctccttgatcatgccaccagtcacagttcctctttggggatc 155
>gb|BJ458585.1|BJ458585 BJ458585 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 3', mRNA sequence
Length = 614
Score = 95.6 bits (48), Expect = 3e-018
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 420 tccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgatt 479
|||||||| ||||||||||| || || || || |||||||||||||| ||||| || ||
Sbjct: 471 tccatgtagaaccgagctcgaaaagccgcgaggtgagcatagtatgccggaggcacaatc 530
Query: 480 gatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgcaac 539
||||| || || |||||||| || || ||||| |||| |||||| |||||||| |||||
Sbjct: 531 gatacagaacgggtgcaccttgcgtaggtgtagcacaggttgttcgtgagagtctgcaaa 590
Query: 540 ccatcagccgtaaatttgttctca 563
||||| || ||||| |||||||||
Sbjct: 591 ccatccgcggtaaaattgttctca 614
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| || |||||||||||||||||| |||| | ||| | |||||||
Sbjct: 316 agcagtaaaacatgacacgtttcacgttttccttgaggtcaggcagaggcttaacagcaa 375
Query: 322 catt 325
||||
Sbjct: 376 catt 379
>gb|BJ450210.1|BJ450210 BJ450210 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28j10 5', mRNA sequence
Length = 507
Score = 93.7 bits (47), Expect = 1e-017
Identities = 168/207 (81%), Gaps = 1/207 (0%)
Strand = Plus / Minus
Query: 362 agggccacggcttgtcgtagcaccgctcgccacagatccgctgtcacttgtatctggctc 421
||||||||||| |||||| ||||| ||||| || || || | ||| ||||| || ||
Sbjct: 212 agggccacggcctgtcgtggcaccactcgcgaccgagccaccgtcggaggtatccggttc 153
Query: 422 catgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgattga 481
|||||| ||||||||||| || || || || |||||||||||||| ||||| || || ||
Sbjct: 152 catgtagaaccgagctcgaaaagccgcgaggtgagcatagtatgccggaggcacaatcga 93
Query: 482 tactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgcaaccc 541
||| || || |||||||| || || ||||| |||| |||||| |||||||| ||||| ||
Sbjct: 92 tacagaacgggtgcaccttgcgtaggtgtagcacaggttgttcgtgagagtctgcaaacc 33
Query: 542 atcagccgtaaatttgttctcatccca 568
||| || ||||| |||||||||||||
Sbjct: 32 atccgcggtaaa-atgttctcatccca 7
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| || |||||||||||||||||| |||| | ||| | |||||||
Sbjct: 309 agcagtaaaacatgacacgtttcacgttttccttgaggtcaggcagaggcttaacagcaa 250
Query: 322 catt 325
||||
Sbjct: 249 catt 246
>gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. vulgare cDNA clone HM14N04
5-PRIME, mRNA sequence
Length = 612
Score = 91.7 bits (46), Expect = 4e-017
Identities = 166/206 (80%)
Strand = Plus / Minus
Query: 452 atgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacctggcatacgtgta 511
|||||| ||||| ||||||||| | | || || ||||| ||||| || |||||||||||
Sbjct: 514 atgagcgtagtacgcaggaggagcagtcgacacggagcgagtgcagcttgcatacgtgta 455
Query: 512 acacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctcatcccacag 571
|||| |||||| || |||| |||| ||||||| | || ||||| ||||| | |||
Sbjct: 454 gcacaggttgtttgtaagagactgcaggtcatcagcactgaagttgttgtcatctcgcag 395
Query: 572 aacatgataatgggcaggacggcttgttccctgaatgccagcatggctgcacaggtagaa 631
|| || ||||| ||||||||||||||||||| || ||||||||||| || ||| ||||
Sbjct: 394 cacgtggtaatgcgcaggacggcttgttcccttgatcccagcatggctacagaggaagaa 335
Query: 632 atcaaactcggttggatggcaaatct 657
||||||||| ||||| ||||| ||||
Sbjct: 334 atcaaactctgttgggtggcagatct 309
>gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_L23 5', mRNA sequence
Length = 670
Score = 79.8 bits (40), Expect = 2e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 593 gcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggca 652
|||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 515 gcttgtgccctgaataccggcatggctacacaggtagaaatcaaactcggtgggatggca 456
Score = 75.8 bits (38), Expect = 2e-012
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 780 ggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcgtacaac 839
||||| ||||| | || ||| |||||||| ||||| || |||||||| | ||| |||| |
Sbjct: 334 ggctgataatccgcctgcaaagatgcacaagccttcctgatggcatccatttcatacatc 275
Query: 840 agaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcctcttgggt 899
||||||||| |||||| || || || ||||| |||||||||||||||||||| |||||
Sbjct: 274 agaacttgggcgaactgcccttcgctcacaccgtccctgtagaatatgatcctgctgggt 215
Query: 900 tt 901
||
Sbjct: 214 tt 213
Score = 40.1 bits (20), Expect = 0.13
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 438 cggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcac 497
||||| || ||||| ||||| ||||| ||||||||||| | || || ||||| |||||
Sbjct: 670 cggaacgcagccaggtgagcgtagtaggcaggaggaacaacagagacagagcgagtgcat 611
Query: 498 ctggcatacgtgtaacacaagttgttggtgag 529
| || || ||||| |||| ||||||||||||
Sbjct: 610 cgagcgtatgtgtagcacaggttgttggtgag 579
>gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. vulgare cDNA clone HB16L19
5-PRIME, mRNA sequence
Length = 470
Score = 79.8 bits (40), Expect = 2e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 593 gcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggca 652
|||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 366 gcttgtgccctgaataccggcatggctacacaggtagaaatcaaactcggtgggatggca 307
Score = 75.8 bits (38), Expect = 2e-012
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 780 ggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcgtacaac 839
||||| ||||| | || ||| |||||||| ||||| || |||||||| | ||| |||| |
Sbjct: 185 ggctgataatccgcctgcaaagatgcacaagccttcctgatggcatccatttcatacatc 126
Query: 840 agaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcctcttgggt 899
||||||||| |||||| || || || ||||| |||||||||||||||||||| |||||
Sbjct: 125 agaacttgggcgaactgcccttcgctcacaccgtccctgtagaatatgatcctgctgggt 66
Query: 900 tt 901
||
Sbjct: 65 tt 64
>gb|AL511938.1|AL511938 AL511938 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09N04u 3',
mRNA sequence
Length = 558
Score = 75.8 bits (38), Expect = 2e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 257 atcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcac 316
|||||||||||| |||||||||||||| ||||||||||||||||| || | ||||| ||
Sbjct: 350 atcttagcagtaaaacatgacgcgcttgacgttttccttgagggcggggagaggcctgac 409
Query: 317 agcaac 322
||||||
Sbjct: 410 agcaac 415
>gb|BU978255.1|BU978255 HA12N07u HA Hordeum vulgare subsp. vulgare cDNA clone HA12N07
3-PRIME, mRNA sequence
Length = 422
Score = 73.8 bits (37), Expect = 1e-011
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 257 atcttagcagtagaacatgacgcgcttcacgttttccttgagggc 301
|||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 339 atcttagcagtaaaacatgacgcgcttgacgttttccttgagggc 383
>gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. vulgare cDNA clone HB25M17
5-PRIME, mRNA sequence
Length = 506
Score = 71.9 bits (36), Expect = 4e-011
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 593 gcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggat 648
|||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||
Sbjct: 66 gcttgtgccctgaataccggcatggctacacaggtagaaatcaaactcggtgggat 11
Score = 42.1 bits (21), Expect = 0.034
Identities = 84/105 (80%)
Strand = Plus / Minus
Query: 425 gtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatac 484
|||| |||| || ||||| || ||||| ||||| ||||| ||||||||||| | || ||
Sbjct: 234 gtaataccgtgcgcggaacgcagccaggtgagcgtagtaggcaggaggaacaacagagac 175
Query: 485 tgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgag 529
||||| ||||| | || || ||||| |||| ||||||||||||
Sbjct: 174 agagcgagtgcatcgagcgtatgtgtagcacaggttgttggtgag 130
>gb|AL501384.1|AL501384 AL501384 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04A05u 3', mRNA sequence
Length = 408
Score = 67.9 bits (34), Expect = 6e-010
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 257 atcttagcagtagaacatgacgcgcttcacgttttccttgagggc 301
|||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct: 352 atcttancagtaaaacatgacgcgcttgacgttttccttgagggc 396
>gb|BG343249.1|BG343249 HVSMEg0005D14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005D14f, mRNA sequence
Length = 954
Score = 67.9 bits (34), Expect = 6e-010
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 843 acttggtagaactgtccctcactgacaccatccctgta 880
|||||||||||||||||||| |||||||||||||||||
Sbjct: 632 acttggtagaactgtccctcgctgacaccatccctgta 595
>gb|BM101164.2|BM101164 EBpi01_SQ003_B06_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_B06 5', mRNA sequence
Length = 363
Score = 61.9 bits (31), Expect = 4e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
|||| ||||| |||||||| ||||||||||||||||| ||||| || | ||||| ||||
Sbjct: 140 cttaacagtaaaacatgacacgcttcacgttttccttcagggcggggaggggcctgacag 81
Query: 319 caacatt 325
|||||||
Sbjct: 80 caacatt 74
>gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 5', mRNA sequence
Length = 481
Score = 56.0 bits (28), Expect = 2e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 555 ttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagca 614
|||||||||||||| || ||||| || || || || | ||||| ||||| || |||||
Sbjct: 335 ttgttctcatcccagaggacatggtagtgagctggcctacttgtaccctggattccagcg 276
Query: 615 tggctgcacaggtagaaatcaaactcggttggatggcaaatctt 658
|| || || ||||||||||||||||| ||||| ||||| |||||
Sbjct: 275 tgactacagaggtagaaatcaaactccgttgggtggcatatctt 232
Score = 44.1 bits (22), Expect = 0.009
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 417 ggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacg 476
||||||||||| ||||| || ||||| || |||||||| || || |||||||| || |||
Sbjct: 473 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacg 414
Query: 477 attgatactgagcgtgtgcacc 498
| || || ||||| |||||||
Sbjct: 413 acggaaacagagcgcgtgcacc 392
>gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 3', mRNA sequence
Length = 589
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 624 aggtagaaatcaaactcggttggatggcaaatctt 658
||||||||||||||||| ||||| ||||| |||||
Sbjct: 525 aggtagaaatcaaactccgttgggtggcatatctt 559
Score = 44.1 bits (22), Expect = 0.009
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 417 ggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacg 476
||||||||||| ||||| || ||||| || |||||||| || || |||||||| || |||
Sbjct: 317 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacg 376
Query: 477 attgatactgagcgtgtgcacc 498
| || || ||||| |||||||
Sbjct: 377 acggaaacagagcgcgtgcacc 398
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,560
Number of Sequences: 312970
Number of extensions: 71560
Number of successful extensions: 18749
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18651
Number of HSP's gapped (non-prelim): 75
length of query: 977
length of database: 175,134,539
effective HSP length: 19
effective length of query: 958
effective length of database: 169,188,109
effective search space: 162082208422
effective search space used: 162082208422
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)