BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696569.2.1
(1022 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 642 0.0
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 613 e-174
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 533 e-150
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 434 e-120
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 426 e-118
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 422 e-117
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 402 e-111
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 389 e-106
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 379 e-103
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 371 e-101
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 369 e-100
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 367 e-100
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 339 1e-091
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 335 2e-090
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 331 3e-089
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 311 2e-083
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 289 9e-077
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 285 1e-075
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 283 6e-075
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 276 1e-072
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 272 2e-071
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 268 3e-070
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 258 3e-067
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 240 7e-062
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 226 1e-057
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 202 2e-050
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 188 2e-046
gb|CA002659.1|CA002659 HS08C15r HS Hordeum vulgare subsp. v... 182 2e-044
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 178 2e-043
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 176 9e-043
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 176 9e-043
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 176 9e-043
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 170 6e-041
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 170 6e-041
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 170 6e-041
gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachi... 168 2e-040
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 168 2e-040
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 165 4e-039
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 163 1e-038
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 161 6e-038
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 157 9e-037
gb|AV917956.1|AV917956 AV917956 K. Sato unpublished cDNA li... 153 1e-035
gb|CA001586.1|CA001586 HS17G02u HS Hordeum vulgare subsp. v... 143 1e-032
gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachi... 139 2e-031
gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachi... 137 8e-031
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 131 5e-029
gb|CA029290.1|CA029290 HZ64M12r HZ Hordeum vulgare subsp. v... 131 5e-029
gb|AL500971.1|AL500971 AL500971 Hordeum vulgare Barke roots... 129 2e-028
gb|BI959974.1|BI959974 HVSMEn0022L12f Hordeum vulgare rachi... 123 1e-026
gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedl... 121 5e-026
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 121 5e-026
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 121 5e-026
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 119 2e-025
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 119 2e-025
gb|BF257377.2|BF257377 HVSMEf0012L15f Hordeum vulgare seedl... 115 3e-024
gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. v... 111 5e-023
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 109 2e-022
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 109 2e-022
gb|BI950803.1|BI950803 HVSMEl0023D24f Hordeum vulgare spike... 107 7e-022
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 98 7e-019
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 94 1e-017
gb|AV916437.1|AV916437 AV916437 K. Sato unpublished cDNA li... 90 2e-016
gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedl... 88 7e-016
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 88 7e-016
gb|BQ660413.1|BQ660413 HI02G15u HI Hordeum vulgare subsp. v... 88 7e-016
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 88 7e-016
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 88 7e-016
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 88 7e-016
gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedl... 86 3e-015
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 86 3e-015
gb|BU999110.1|BU999110 HI13E18r HI Hordeum vulgare subsp. v... 86 3e-015
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 84 1e-014
gb|BQ461095.1|BQ461095 HE01D18r HE Hordeum vulgare subsp. v... 84 1e-014
gb|CA016704.1|CA016704 HV06N05u HV Hordeum vulgare subsp. v... 80 2e-013
gb|BI957544.1|BI957544 HVSMEn0010B08f Hordeum vulgare rachi... 78 6e-013
gb|CA018512.1|CA018512 HV08N14r HV Hordeum vulgare subsp. v... 78 6e-013
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 78 6e-013
gb|BF622348.3|BF622348 HVSMEa0002O10f Hordeum vulgare seedl... 76 3e-012
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 76 3e-012
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 74 1e-011
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 74 1e-011
gb|CA006089.1|CA006089 HU05D17u HU Hordeum vulgare subsp. v... 74 1e-011
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 74 1e-011
gb|BF253545.2|BF253545 HVSMEf0001D17f Hordeum vulgare seedl... 70 2e-010
gb|AV917957.1|AV917957 AV917957 K. Sato unpublished cDNA li... 70 2e-010
gb|BQ468086.1|BQ468086 HR01O13r HR Hordeum vulgare subsp. v... 68 6e-010
gb|BQ663826.1|BQ663826 HU04D11u HU Hordeum vulgare subsp. v... 68 6e-010
gb|CA020099.1|CA020099 HV14F10r HV Hordeum vulgare subsp. v... 68 6e-010
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 64 1e-008
gb|BG343293.2|BG343293 HVSMEg0005F10f Hordeum vulgare pre-a... 58 6e-007
gb|BG301240.1|BG301240 HVSMEb0020C04f Hordeum vulgare seedl... 54 9e-006
gb|BQ760589.1|BQ760589 EBro03_SQ001_N06_R root, 3 week, wat... 54 9e-006
gb|CA020777.1|CA020777 HZ37K23r HZ Hordeum vulgare subsp. v... 46 0.002
gb|CB875905.1|CB875905 HX09L09w HX Hordeum vulgare subsp. v... 46 0.002
gb|BE421524.1|BE421524 HWM010.C01 ITEC HWM Barley Leaf Libr... 40 0.14
gb|AL511857.1|AL511857 AL511857 Hordeum vulgare Barke devel... 40 0.14
gb|BF621313.2|BF621313 HVSMEa0006H09f Hordeum vulgare seedl... 40 0.14
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 642 bits (324), Expect = 0.0
Identities = 450/492 (91%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct: 19 ggcggggcgtgcgggtacggtaacctgtacagcactgggtacggcacgaacacggcggcg 78
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgc 191
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 79 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgc 138
Query: 192 gacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgc 251
||||||| ||| | | ||||| |||||| |||||| || || |||||||||||||||
Sbjct: 139 gacaacgccggcagctcgtgccggccggggtccatcatggtgaccgccaccaacttctgc 198
Query: 252 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcac 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 199 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccccac 258
Query: 312 ttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgccc 371
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 259 ttcgacatggccgagccggccttcctccacatcgcgcagtaccgcgccggcatcgtaccc 318
Query: 372 gtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacggg 431
||| | | ||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 319 gtctcctacagaagggtgccgtgcgtgaagaaggggggcatccggttcaccatcaacggc 378
Query: 432 cactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctcc 491
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 379 cactcctacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgcgcgctcc 438
Query: 492 gtctccatccggggctcccgcacggggtggcagcccatgtcccggaactggggccagaac 551
|| |||||| |||| | ||||| || |||||| |||||||||| ||||||||| ||||
Sbjct: 439 gtgtccatcaagggcacgcgcaccggctggcaggccatgtcccgcaactggggcatgaac 498
Query: 552 tggcagagcaac 563
||||||||||||
Sbjct: 499 tggcagagcaac 510
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 613 bits (309), Expect = e-174
Identities = 446/492 (90%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct: 237 ggcggggcgtgcgggtacggtaacctgtacagcactgggtacggcacgaacacggcggcg 296
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgc 191
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 297 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgc 356
Query: 192 gacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgc 251
||||||| ||| | | ||||| |||||| |||||| || || |||||||||||||||
Sbjct: 357 gacaacgccggcagctcgtgccggccggggtccatcatggtgaccgccaccaacttctgc 416
Query: 252 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcac 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 417 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccccac 476
Query: 312 ttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgccc 371
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 477 ttcgacatggccgagccggccttcctccacatcgcgcagtaccgcgccggcatcgtaccc 536
Query: 372 gtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacggg 431
||| | | ||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 537 gtctcctacagaagggtgccgtgcgtgaagaaggggggcatccggttcaccatcaacggc 596
Query: 432 cactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctcc 491
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 597 cactcctacttcaacctggtgctggtgaccaacgtggncggcgccggcgacgcgcgctcc 656
Query: 492 gtctccatccggggctcccgcacggggtggcagcccatgtcccggaactggggccagaac 551
|| | |||| ||| | ||||| || ||||| |||||||||| ||||||||| ||||
Sbjct: 657 gtgttcatcaaaggcacgcgcaccggctggcaagccatgtcccgcaactggggcatgaac 716
Query: 552 tggcagagcaac 563
||||||||||||
Sbjct: 717 tggcagagcaac 728
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 533 bits (269), Expect = e-150
Identities = 383/421 (90%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct: 237 ggcggggcgtgcgggtacggtaacctgtacagcactgggtacggcacgaacacggcggcg 296
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgc 191
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 297 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgc 356
Query: 192 gacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgc 251
||||||| ||| | | ||||| |||||| |||||| || || |||||||||||||||
Sbjct: 357 gacaacgccggcagctcgtgccggccggggtccatcatggtgaccgccaccaacttctgc 416
Query: 252 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcac 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 417 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccccac 476
Query: 312 ttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgccc 371
|| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 477 ttagacatggccgagccggccttcctccacatcgcgcagtaccgggccggcatcgtaccc 536
Query: 372 gtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacggg 431
|| | | ||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 537 ctctcctacagaagggtgccgtgcgtgaagaaagggggcatccggttcaccatcaacggc 596
Query: 432 cactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctcc 491
||||||||||| ||||||| |||||||||||||||||| |||||||| |||| |||||||
Sbjct: 597 cactcctacttaaacctggggctggtgaccaacgtggccggcgccggggacgcgcgctcc 656
Query: 492 g 492
|
Sbjct: 657 g 657
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 434 bits (219), Expect = e-120
Identities = 333/371 (89%)
Strand = Plus / Plus
Query: 317 catggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgc 376
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct: 1 catggccgagccggccttcctccacatcgcgcagtaccgcgccggcatcgtacccgtctc 60
Query: 377 gttcaggagagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactc 436
| ||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 61 ctacagaagggtgccgtgcgtgaagaaggggggcatccggttcaccatcaacggccactc 120
Query: 437 ctacttcaacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctc 496
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||
Sbjct: 121 ctacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgcgcgctccgtgtc 180
Query: 497 catccggggctcccgcacggggtggcagcccatgtcccggaactggggccagaactggca 556
|||| |||| | ||||| || |||||| |||||||||| ||||||||| |||||||||
Sbjct: 181 catcaagggcacgcgcaccggctggcaggccatgtcccgcaactggggcatgaactggca 240
Query: 557 gagcaactcgtacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccg 616
||||||| | | ||||||| | ||| ||||| ||| ||||||| |||||||||||||
Sbjct: 241 gagcaacaccttcctggacggccagtgcctctccttcagggtcacctccagcgacggccg 300
Query: 617 caccgtcaccagcaacggcgccgtccccgccggctggcagttcggccagaccttcgaggg 676
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 301 caccgtcaccagcaacgccgccgcgcccgccggctggcagttcggccagaccttcgaggg 360
Query: 677 cggccagttct 687
|| ||||||||
Sbjct: 361 cgcccagttct 371
Score = 46.1 bits (23), Expect = 0.002
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttcccttttctc 935
|||| |||||||||||| || |||||||||| ||||||||| |||| ||||
Sbjct: 553 gctacgctgaggctgctgat-tagcacccgcttagacgttttccttctctc 602
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 426 bits (215), Expect = e-118
Identities = 281/303 (92%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct: 216 ggcggggcgtgcgggtacggtaacctgtacagcactgggtacggcacgaacacggcggcg 275
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgc 191
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 276 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgc 335
Query: 192 gacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgc 251
||||||| ||| | | ||||| |||||| |||||| || || |||||||||||||||
Sbjct: 336 gacaacgccggcagctcgtgccggccggggtccatcatggtgaccgccaccaacttctgc 395
Query: 252 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcac 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 396 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccccac 455
Query: 312 ttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgccc 371
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 456 ttcgacatggccgagccggccttcctccacatcgcgcagtaccgcgccggcatcgtaccc 515
Query: 372 gtc 374
|||
Sbjct: 516 gtc 518
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 422 bits (213), Expect = e-117
Identities = 351/397 (88%)
Strand = Plus / Plus
Query: 291 tgcaacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcag 350
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccacatcgggcag 60
Query: 351 taccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggc 410
||||||||||||||||| ||||| | | ||| || |||||||||||||||||||| |||
Sbjct: 61 taccgcgccggcatcgtacccgtttcctacagaagggtgccgtgcgtgaagaaggggggc 120
Query: 411 atccggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcg 470
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atccggttcaccatcaacggccactcctacttcaacctggtgctggtgaccaacgtggcc 180
Query: 471 ggcgccggcgacgtgcgctccgtctccatccggggctcccgcacggggtggcagcccatg 530
||||||||||||| ||||||||| |||||| |||| | ||||| || |||||| |||||
Sbjct: 181 ggcgccggcgacgcgcgctccgtgtccatcaagggcacgcgcaccggctggcaggccatg 240
Query: 531 tcccggaactggggccagaactggcagagcaactcgtacctggacaggcaggcgctctcg 590
||||| ||||||||| |||||||||||||| | | | ||||||| | ||| |||||
Sbjct: 241 tcccgcaactggggcatgaactggcagagcatcaccttcctggacggccagtgcctctcc 300
Query: 591 ttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtccccgccggc 650
||| ||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct: 301 ttcagggtcacctccagcgacggccgaaccgtcaccagcaacgccgccgggcccgccggc 360
Query: 651 tggcagttcggccagaccttcgagggcggccagttct 687
|||||||| ||||||||||| |||||| ||||||||
Sbjct: 361 tggcagtttcgccagaccttctagggcgcccagttct 397
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 402 bits (203), Expect = e-111
Identities = 410/479 (85%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| ||
Sbjct: 36 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacgcgct 95
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
|||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 96 gcccaacgacgacggcggctggtgcaacccgccgcgcgcccacttcgacatggcagagcc 155
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagt 388
|||| ||||| |||| ||||||||||||||||||||||| | | | |||| ||
Sbjct: 156 cgcctacctccagatcggtatctaccgcgccggcatcgtgcccgtttcctaccggagggt 215
Query: 389 gccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
||| || |||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct: 216 gccctgtgtgaagaagggcgggatgaggttcaccatcaacggccactcctacttcaacct 275
Query: 449 ggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggctc 508
|||||| |||||||||||||| |||||||||||||||| |||||||||||| ||| ||
Sbjct: 276 ggtgcttgtgaccaacgtggccggcgccggcgacgtgcagtccgtctccatcaaggggtc 335
Query: 509 ccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgta 568
| || | ||||||||| |||||||||| ||||||||||||||||||||||||||| || |
Sbjct: 336 cagctccgggtggcaggccatgtcccgcaactggggccagaactggcagagcaacgcgga 395
Query: 569 cctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccag 628
||| ||| | ||| ||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct: 396 cctcgacggccagagcctctccttccgggtcaccctcagcgacggccgcaccgtcaccag 455
Query: 629 caacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|||| ||||| ||| ||||||||| || || ||||||||||| || ||||||||||
Sbjct: 456 caacaacgccgccccggccggctggtcctttggacagaccttcgaaggaggccagttct 514
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 389 bits (196), Expect = e-106
Identities = 397/464 (85%)
Strand = Plus / Minus
Query: 224 catcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacgg 283
||||||| |||| ||||||||| | |||||||||||||||| || |||| |||||||||
Sbjct: 716 catcaccatcaccgccaccaacctttgcccgcccaactacgcgctgcccaacgacgacgg 657
Query: 284 cggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcat 343
|||||||||||||||||||||| | |||||||||||||| ||||| |||| ||||| ||
Sbjct: 656 cggctggtgcaacccgccgcgcgcccacttcgacatggcagagcccgcctacctccagat 597
Query: 344 cgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaa 403
|| ||||||||||||||||||||||| | | | |||| ||||| || ||||||||
Sbjct: 596 cggtatctaccgcgccggcatcgtgcccgtttcctaccggagggtgccctgtgtgaagaa 537
Query: 404 gggcggcatccggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaa 463
|||||| || |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 536 gggcgggatgaggttcaccatcaacggccactcctacttcaacctggtgcttgtgaccaa 477
Query: 464 cgtggcgggcgccggcgacgtgcgctccgtctccatccggggctcccgcacggggtggca 523
|||||| |||||||||||||||| |||||||||||| ||| ||| || | ||||||||
Sbjct: 476 cgtggccggcgccggcgacgtgcagtccgtctccatcaaggggtccagctccgggtggca 417
Query: 524 gcccatgtcccggaactggggccagaactggcagagcaactcgtacctggacaggcaggc 583
| |||||||||| ||||||||||||||||||||||||||| || |||| ||| | |||
Sbjct: 416 ggccatgtcccgcaactggggccagaactggcagagcaacgcggacctcgacggccagag 357
Query: 584 gctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtccc 643
||||| |||| ||||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct: 356 cctctccttccgggtcaccctcagcgacggccgcaccgtcaccagcaacaacgccgcccc 297
Query: 644 cgccggctggcagttcggccagaccttcgagggcggccagttct 687
||||||||| || || ||||||||||| || ||||||||||
Sbjct: 296 ggccggctggtcctttggacagaccttcgaaggaggccagttct 253
>gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013B19f, mRNA sequence
Length = 626
Score = 379 bits (191), Expect = e-103
Identities = 245/263 (93%)
Strand = Plus / Plus
Query: 112 acggcacgagcacggcggcgctgagcacggcgctgttcaacgacggcgcggcgtgcgggt 171
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acggcacgaacacggcggcgctgagcacggcgctgttcaacgacggcgcggcgtgcgggt 60
Query: 172 cctgctacgagctgcggtgcgacaacgacgggcggtggtgcctgccgggcaccatcaccg 231
| |||||||||||||| |||||||||| ||| | | ||||| |||||| |||||| |
Sbjct: 61 cgtgctacgagctgcgctgcgacaacgccggcagctcgtgccggccggggtccatcatgg 120
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaccgccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 180
Query: 292 gcaacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagt 351
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 181 gcaacccgccgcgcccccacttcgacatggccgagccggccttcctccacatcgcgcagt 240
Query: 352 accgcgccggcatcgtgcccgtc 374
|||||||||||||||| ||||||
Sbjct: 241 accgcgccggcatcgtacccgtc 263
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 371 bits (187), Expect = e-101
Identities = 376/439 (85%)
Strand = Plus / Plus
Query: 249 tgcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccg 308
|||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |
Sbjct: 14 tgcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaacccgccgcgcgcc 73
Query: 309 cacttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtg 368
|||||||||||||| ||||| |||| ||||| |||| ||||||||||||||||||
Sbjct: 74 cacttcgacatggcagagcccgcctacctccagatcggtatctaccgcgccggcatcgtg 133
Query: 369 cccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccggttcaccatcaac 428
||||| | | | |||| ||||| || |||||||||||||| || ||||||||||||||
Sbjct: 134 cccgtttcctaccggagggtgccctgtgtgaagaagggcgggatgaggttcaccatcaac 193
Query: 429 gggcactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgc 488
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 194 ggccactcctacttcaacctggtgcttgtgaccaacgtggccggcgccggcgacgtgcag 253
Query: 489 tccgtctccatccggggctcccgcacggggtggcagcccatgtcccggaactggggccag 548
|||||||||||| ||| ||| || | ||||||||| |||||||||| ||||||||||||
Sbjct: 254 tccgtctccatcaaggggtccagctccgggtggcaggccatgtcccgcaactggggccag 313
Query: 549 aactggcagagcaactcgtacctggacaggcaggcgctctcgttccaggtcaccgccagc 608
||||||||||||||| || |||| ||| | ||| ||||| |||| ||||||| ||||
Sbjct: 314 aactggcagagcaacgcggacctcgacggccagagcctctccttccgggtcaccctcagc 373
Query: 609 gacggccgcaccgtcaccagcaacggcgccgtccccgccggctggcagttcggccagacc 668
|||||||||||||||||||||||| ||||| ||| ||||||||| || || ||||||
Sbjct: 374 gacggccgcaccgtcaccagcaacaacgccgccccggccggctggtcctttggacagacc 433
Query: 669 ttcgagggcggccagttct 687
||||| || ||||||||||
Sbjct: 434 ttcgaaggaggccagttct 452
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 369 bits (186), Expect = e-100
Identities = 375/438 (85%)
Strand = Plus / Plus
Query: 250 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgc 309
||||||||||||||| || |||| ||||||||||||||||||||||||||||||| | |
Sbjct: 1 gcccgcccaactacgcgctgcccaacgacgacggcggctggtgcaacccgccgcgcgccc 60
Query: 310 acttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgc 369
||||||||||||| ||||| |||| ||||| |||| |||||||||||||||||||
Sbjct: 61 acttcgacatggcagagcccgcctacctccagatcggtatctaccgcgccggcatcgtgc 120
Query: 370 ccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacg 429
|||| | | | |||| ||||| || |||||||||||||| || |||||||||||||||
Sbjct: 121 ccgtttcctaccggagggtgccctgtgtgaagaagggcgggatgaggttcaccatcaacg 180
Query: 430 ggcactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgct 489
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct: 181 gccactcctacttcaacctggtgcttgtgaccaacgtggccggcgccggcgacgtgcagt 240
Query: 490 ccgtctccatccggggctcccgcacggggtggcagcccatgtcccggaactggggccaga 549
||||||||||| ||| ||| || | ||||||||| |||||||||| |||||||||||||
Sbjct: 241 ccgtctccatcaaggggtccagctccgggtggcaggccatgtcccgcaactggggccaga 300
Query: 550 actggcagagcaactcgtacctggacaggcaggcgctctcgttccaggtcaccgccagcg 609
|||||||||||||| || |||| ||| | ||| ||||| |||| ||||||| |||||
Sbjct: 301 actggcagagcaacgcggacctcgacggccagagcctctccttccgggtcaccctcagcg 360
Query: 610 acggccgcaccgtcaccagcaacggcgccgtccccgccggctggcagttcggccagacct 669
||||||||||||||||||||||| ||||| ||| ||||||||| || || |||||||
Sbjct: 361 acggccgcaccgtcaccagcaacaacgccgccccggccggctggtcctttggacagacct 420
Query: 670 tcgagggcggccagttct 687
|||| || ||||||||||
Sbjct: 421 tcgaaggaggccagttct 438
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 367 bits (185), Expect = e-100
Identities = 268/296 (90%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct: 237 ggcggggcgtgcgggtacggtaacctgtacagcactgggtacggcacgaacacggcggcg 296
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgc 191
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 297 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgc 356
Query: 192 gacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgc 251
||||||| ||| | | ||||| | |||| |||||| || || |||||||||||||||
Sbjct: 357 gacaacgccggcagctcgtgccgggcggggtccatcatggtgaccgccaccaacttctgc 416
Query: 252 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcac 311
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 417 ccgcccaactacgggctncccagcgacgacggcgggtggtgcaacccgccgcgcccccac 476
Query: 312 ttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgt 367
|| ||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct: 477 tttgacatggccgagccggccttccttcacatcgcgcagtaccgggccggcatcgt 532
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 339 bits (171), Expect = 1e-091
Identities = 309/355 (87%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| ||
Sbjct: 179 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacgcgct 238
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
|||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 239 gcccaacgacgacggcggctggtgcaacccgccgcgcgcccacttcgacatggcagagcc 298
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagt 388
|||| ||||| |||| ||||||||||||||||||||||| | | | |||| ||
Sbjct: 299 cgcctacctccagatcggtatctaccgcgccggcatcgtgcccgtttcctaccggagggt 358
Query: 389 gccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
||| || |||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct: 359 gccctgtgtgaagaagggcgggatgaggttcaccatcaacggccactcctacttcaacct 418
Query: 449 ggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggctc 508
|||||| |||||||||||||| |||||||||||||||| |||||||||||| ||| ||
Sbjct: 419 ggtgcttgtgaccaacgtggccggcgccggcgacgtgcagtccgtctccatcaaggggtc 478
Query: 509 ccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
| || | ||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 479 cagctccgggtggcaggccatgtcccgcaactggggccagaactggcagagcaac 533
Score = 176 bits (89), Expect = 9e-043
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 48 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 107
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 108 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagct 160
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 335 bits (169), Expect = 2e-090
Identities = 308/355 (86%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| ||
Sbjct: 74 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacgcgct 133
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
|||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 134 gcccaacgacgacggcggctggtgcaacccgccgcgcgcccacttcgacatggcagagcc 193
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagt 388
|||| ||||| |||| ||||||||||||||||||||||| | | | |||| ||
Sbjct: 194 cgcctacctccagatcggtatctaccgcgccggcatcgtgcccgtttcctaccggagggt 253
Query: 389 gccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
||| || |||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct: 254 gccctgtgtgaagaagggcggnatgaggttcaccatcaacggccactcctacttcaacct 313
Query: 449 ggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggctc 508
|||||| | |||||||||||| |||||||||||||||| |||||||||||| ||| ||
Sbjct: 314 ggtgcttgngaccaacgtggccggcgccggcgacgtgcagtccgtctccatcaaggggtc 373
Query: 509 ccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
| || | ||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 374 cagctccgggtggcaggccatgtcccgcaactggggccagaactggcagagcaac 428
Score = 87.7 bits (44), Expect = 7e-016
Identities = 54/56 (96%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 129 gcgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 1 gcgctgagcacggcgctgtt-aacgacggcgcggcgtgcgggtcgtgctacgagct 55
>gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 3', mRNA sequence
Length = 701
Score = 331 bits (167), Expect = 3e-089
Identities = 260/291 (89%)
Strand = Plus / Minus
Query: 397 tgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacctggtgctgg 456
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 701 tgaagaaggggggcatccggttcaccatcaacggccactcctacttcaacctggtgctgg 642
Query: 457 tgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggctcccgcacgg 516
||||||||||||| ||||||||||||| ||||||||| |||||| |||| | ||||| |
Sbjct: 641 tgaccaacgtggccggcgccggcgacgcgcgctccgtgtccatcaagggcacgcgcaccg 582
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggaca 576
| |||||| |||||||||| ||||||||| |||||||||||||||| | | |||||||
Sbjct: 581 gctggcaggccatgtcccgcaactggggcatgaactggcagagcaacaccttcctggacg 522
Query: 577 ggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcg 636
| ||| ||||| ||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 521 gccagtgcctctccttcagggtcacctccagcgacggccgcaccgtcaccagcaacgccg 462
Query: 637 ccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 461 ccgcgcccgccggctggcagttcggccagaccttcgagggcgcccagttct 411
Score = 46.1 bits (23), Expect = 0.002
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttcccttttctc 935
|||| |||||||||||| || |||||||||| ||||||||| |||| ||||
Sbjct: 229 gctacgctgaggctgctgat-tagcacccgcttagacgttttccttctctc 180
>gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 5', mRNA sequence
Length = 536
Score = 311 bits (157), Expect = 2e-083
Identities = 247/277 (89%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 260 gtgccgtgcgtgaagaaggggggcatccggttcaccatcaacggccactcctacttcaac 319
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| ||||
Sbjct: 320 ctggtgctggtgaccaacgtggccggcgccggcgacgcgcgctccgtgtccatcaagggc 379
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
| ||||| || |||||| |||||||||| ||||||||| |||||||||||||||| |
Sbjct: 380 acgcgcaccggctggcaggccatgtcccgcaactggggcatgaactggcagagcaacacc 439
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
| ||||||| | ||| ||||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 440 ttcctggacggccagtgcctctccttcagggtcacctccagcgacggccgcaccgtcacc 499
Query: 627 agcaacggcgccgtccccgccggctggcagttcggcc 663
||||||| ||||| ||||||||||||||||||||||
Sbjct: 500 agcaacgccgccgcgcccgccggctggcagttcggcc 536
>gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52D12
5-PRIME, mRNA sequence
Length = 475
Score = 289 bits (146), Expect = 9e-077
Identities = 236/266 (88%)
Strand = Plus / Plus
Query: 422 catcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggcga 481
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11 catcaacggccactcctacttcaacctggtgctggtgaccaacgtggccggcgccggcga 70
Query: 482 cgtgcgctccgtctccatccggggctcccgcacggggtggcagcccatgtcccggaactg 541
|| ||||||||| |||||| |||| | ||||| || |||||| |||||||||| |||||
Sbjct: 71 cgcgcgctccgtgtccatcaagggcacgcgcaccggctggcaggccatgtcccgcaactg 130
Query: 542 gggccagaactggcagagcaactcgtacctggacaggcaggcgctctcgttccaggtcac 601
|||| |||||||||||||||| | | ||||||| | ||| ||||| ||| ||||||
Sbjct: 131 gggcatgaactggcagagcaacaccttcctggacggccagtgcctctccttcagggtcac 190
Query: 602 cgccagcgacggccgcaccgtcaccagcaacggcgccgtccccgccggctggcagttcgg 661
| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 191 ctccagcgacggccgcaccgtcaccagcaacgccgccgcgcccgccggctggcagttcgg 250
Query: 662 ccagaccttcgagggcggccagttct 687
||||||||||||||||| ||||||||
Sbjct: 251 ccagaccttcgagggcgcccagttct 276
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 285 bits (144), Expect = 1e-075
Identities = 304/356 (85%), Gaps = 1/356 (0%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| || |||||| |||||||||||||||||| ||
Sbjct: 312 gtgcgtgccgggcagcatcaccatcaccgctaccaacctctgcccgcccaactacgcgct 371
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
|||| |||||||||||||||||||||||| |||||| | |||| |||||||||||||||
Sbjct: 372 gcccaacgacgacggcggctggtgcaacccaccgcgcgcacactgcgacatggccgagcc 431
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagt 388
|||| ||||| |||| ||||||||||||||||||||||| | | | |||| ||
Sbjct: 432 agcctacctccagatcggtatctaccgcgccggcatcgtgcccgtttcctaccggagggt 491
Query: 389 gccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
||| || ||||||||||| || || |||||||||| ||||| |||||||||||||||||
Sbjct: 492 gccctgtgtgaagaagggagggataaggttcaccattaacggccactcctacttcaacct 551
Query: 449 ggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggctc 508
||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||
Sbjct: 552 ggtgctggtgaccaacgtggccggcgccggcgacgtgcagtccgtctccatcaaggggtc 611
Query: 509 ccgcacggggtggcagcccatgtcccggaactggggccagaact-ggcagagcaac 563
| || | ||||||||| |||||| || | ||||||| ||||||| |||||||||||
Sbjct: 612 cagctccgggtggcaggccatgtgcccgcactggggtcagaactgggcagagcaac 667
Score = 176 bits (89), Expect = 9e-043
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 181 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 240
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagct 293
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 283 bits (143), Expect = 6e-075
Identities = 304/355 (85%), Gaps = 2/355 (0%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| ||
Sbjct: 99 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacgcgct 158
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
|||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 159 gcccaacgacgacggcggctggtgcaacccgccgcgcgcccacttcgacatggcagagcc 218
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagt 388
|||| ||||| |||| ||||||||||||||||||||||| | | | |||| ||
Sbjct: 219 cgcctacctccagatcggtatctaccgcgccggcatcgtgcccgtttcctaccggagggt 278
Query: 389 gccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
||| || |||||||||||||| || |||||||||||||||| ||||||||||| |||||
Sbjct: 279 gccctgtgtgaagaagggcgggatgaggttcaccatcaacggccactcctactttaacct 338
Query: 449 ggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggctc 508
|||||| |||||||||||||| |||||||||||||||| ||||||||||| ||| ||
Sbjct: 339 ggtgcttgtgaccaacgtggccggcgccggcgacgtgcagtccgtctccataaaggg-tc 397
Query: 509 ccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
| || | |||||| || || ||||||| |||||||||||||||||||| ||||||
Sbjct: 398 cagctccgggtgg-aggccctgtcccgcaactggggccagaactggcaaagcaac 451
Score = 127 bits (64), Expect = 8e-028
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 105 acggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacggcgcggcg 164
||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acgggttacggcacgaacacagcggcgctgagcacggcgctgttcaacgacggcgcggcg 60
Query: 165 tgcgggtcctgctacgagct 184
|||||||| |||||||||||
Sbjct: 61 tgcgggtcgtgctacgagct 80
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 276 bits (139), Expect = 1e-072
Identities = 302/355 (85%), Gaps = 1/355 (0%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| ||
Sbjct: 118 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacgcgct 177
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
| || |||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 178 gcggag-gacgacggcggctggtgcaacccgccgcgcgcccacttcgacatggcagagcc 236
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagt 388
|||| ||||| |||| ||||||||||||||||||||||| | | | |||| ||
Sbjct: 237 cgcctacctccagatcggtatctaccgcgccggcatcgtgcccgtttcctaccggagggt 296
Query: 389 gccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
||| || |||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct: 297 gccctgtgtgaagaagggcgggatgaggttcaccatcaacggccactcctacttcaacct 356
Query: 449 ggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggctc 508
|||||| |||||||||||||| |||||||||||||||| |||||||||||| ||| ||
Sbjct: 357 ggtgcttgtgaccaacgtggccggcgccggcgacgtgcagtccgtctccatcaaggggtc 416
Query: 509 ccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
| || | |||||||| |||||| || | | |||||||| |||||||||||||||
Sbjct: 417 cagctccgggtggcaagccatgttcccgcaatggggccataactggcagagcaac 471
Score = 135 bits (68), Expect = 3e-030
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 93 aacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcgctgttcaac 152
|||||||||||||| || | ||| |||| |||||||||||||||||||||||||||||||
Sbjct: 8 aacctgtacagcacaggttgcgggacgaacacggcggcgctgagcacggcgctgttcaac 67
Query: 153 gacggcgcggcgtgcgggtcctgctacgagct 184
|||||||||||||||||||| |||||||||||
Sbjct: 68 gacggcgcggcgtgcgggtcgtgctacgagct 99
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 272 bits (137), Expect = 2e-071
Identities = 260/301 (86%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||| || |||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct: 16 gtgccctgtgtgaagaagggcgggatgaggttcaccatcaacggccactcctacttcaac 75
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
|||||||| |||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct: 76 ctggtgcttgtgaccaacgtggccggcgccggcgacgtgcagtccgtctccatcaagggg 135
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
||| || | ||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 136 tccagctccgggtggcaggccatgtcccgcaactggggccagaactggcagagcaacgcg 195
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
|||| ||| | ||| ||||| |||| ||||||| ||||||||||||||||||||||
Sbjct: 196 gacctcgacggccagagcctctccttccgggtcaccctcagcgacggccgcaccgtcacc 255
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| ||||| ||| ||||||||| || || ||||||||||| || |||||||||
Sbjct: 256 agcaacaacgccgccccggccggctggtcctttggacagaccttcgaaggaggccagttc 315
Query: 687 t 687
|
Sbjct: 316 t 316
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 268 bits (135), Expect = 3e-070
Identities = 252/291 (86%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| ||
Sbjct: 335 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacgcgct 394
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
|||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 395 gcccaacgacgacggcggctggtgcaacccgccgcgcgcccacttcgacatggcagagcc 454
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagt 388
|||| ||||| |||| ||||||||||||||||||||||| | | | |||| ||
Sbjct: 455 cgcctacctccagatcggtatctaccgcgccggcatcgtgcccgtttcctaccggagggt 514
Query: 389 gccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
||| || |||||||||||||| || |||||||||||||||| ||||||||||| |||||
Sbjct: 515 gccctgtgtgaagaagggcgggatgaggttcaccatcaacggccactcctactttaacct 574
Query: 449 ggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccat 499
|||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 575 ggtgcttgtgaccaacgtggccggcgccggcgacgtgcagtccgtctccat 625
Score = 176 bits (89), Expect = 9e-043
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 204 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 263
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagct 316
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 258 bits (130), Expect = 3e-067
Identities = 241/278 (86%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| || |||||| |||||||||||||||||| ||
Sbjct: 313 gtgcgtgccgggcagcatcaccatcaccgctaccaacctctgcccgcccaactacgcgct 372
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
|||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 373 gcccaacgacgacggcggctggtgcaacccaccgcgcgcacacttcgacatggccgagcc 432
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagt 388
|||| ||||| |||| ||||||||||||||||||||||| | | | |||| ||
Sbjct: 433 agcctacctccagatcggtatctaccgcgccggcatcgtgcccgtttcctaccggagggt 492
Query: 389 gccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
||| || ||||||||||| || || |||||||||| ||||| |||||||||||||||||
Sbjct: 493 gccctgtgtgaagaagggagggataaggttcaccattaacggccactcctacttcaacct 552
Query: 449 ggtgctggtgaccaacgtggcgggcgccggcgacgtgc 486
||||||||||||||||||||| ||||||||||||||||
Sbjct: 553 ggtgctggtgaccaacgtggccggcgccggcgacgtgc 590
Score = 176 bits (89), Expect = 9e-043
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 182 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 241
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 242 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagct 294
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 240 bits (121), Expect = 7e-062
Identities = 305/360 (84%), Gaps = 5/360 (1%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| ||
Sbjct: 237 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacgcgct 296
Query: 269 ccccagcgacgacg-gcggctggtgcaacccgccgcgcccgcacttcgacatggccgagc 327
|||| ||||||| ||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 297 gcccaacgacgaccagcggctggtgcaacccgccgcgcgcccacttcgacatggcagagc 356
Query: 328 cggccttcctccgcatcgcgcagtacc-gcgccggcatcgtgcccgtcgcgttcaggaga 386
| |||| ||||| |||| |||| ||||||||||||||||||| | | | ||||
Sbjct: 357 ccgcctacctccagatcggtatctacccgcgccggcatcgtgcccgtttcctaccggagg 416
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||| || |||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct: 417 gtgccctgtgtgaagaagggcgggatgaggttcaccatcaacggccactcctacttcaac 476
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
|||||||| |||||||||||||| |||||||||||||||| ||||||| |||| |||
Sbjct: 477 ctggtgcttgtgaccaacgtggccggcgccggcgacgtgcagtccgtctncatcaagggg 536
Query: 507 tcc-cgcacggggt-ggcagcccatgtcccggaact-ggggccagaactggcagagcaac 563
||| || | |||| || || |||||| ||| |||| |||||||||||||||||||||||
Sbjct: 537 tccaagctccgggtgggaaggccatgttccgcaactgggggccagaactggcagagcaac 596
Score = 176 bits (89), Expect = 9e-043
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 106 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 165
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 166 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagct 218
>gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. vulgare cDNA clone HF01B01
5-PRIME, mRNA sequence
Length = 685
Score = 226 bits (114), Expect = 1e-057
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 458 gaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggctcccgcacggg 517
|||||||||||| ||||||||||||| ||||||||| |||||| |||| | ||||| ||
Sbjct: 1 gaccaacgtggccggcgccggcgacgcgcgctccgtgtccatcaagggcacgcgcaccgg 60
Query: 518 gtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggacag 577
|||||| |||||||||| ||||||||| |||||||||||||||| | | ||||||| |
Sbjct: 61 ctggcaggccatgtcccgcaactggggcatgaactggcagagcaacaccttcctggacgg 120
Query: 578 gcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgc 637
||| ||||| ||| ||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 121 ccagtgcctctccttcagggtcacctccagcgacggccgcaccgtcaccagcaacgccgc 180
Query: 638 cgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 181 cgcgcccgccggctggcagttcggccagaccttcgagggcgcccagttct 230
Score = 46.1 bits (23), Expect = 0.002
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttcccttttctc 935
|||| |||||||||||| || |||||||||| ||||||||| |||| ||||
Sbjct: 412 gctacgctgaggctgctgat-tagcacccgcttagacgttttccttctctc 461
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 202 bits (102), Expect = 2e-050
Identities = 217/254 (85%), Gaps = 1/254 (0%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| | ||||||| | |||||||||||||||| ||
Sbjct: 361 gtgcgtgccgggcagcatcaccatcaccggcaccaacctttgcccgcccaactacgcgct 420
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
|||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 421 gcccaacgacgacggcggctggtgcaacccgccgcgcgcccacttcgacatggcagagcc 480
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagt 388
|||| ||||| |||| ||||||||||||||||||||||| | | | ||| ||
Sbjct: 481 cgcctacctccagatcggtatctaccgcgccggcatcgtgcccgtttcctaccggaaggt 540
Query: 389 gccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
||| || |||||||| ||||| || |||||||||||||||||||||||||||| |||||
Sbjct: 541 gccctgtgtgaagaaaggcgggatgaggttcaccatcaacgggcactcctactt-aacct 599
Query: 449 ggtgctggtgacca 462
||||||||||||||
Sbjct: 600 ggtgctggtgacca 613
Score = 176 bits (89), Expect = 9e-043
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 230 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 289
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 290 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagct 342
>gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024K11f, mRNA sequence
Length = 847
Score = 188 bits (95), Expect = 2e-046
Identities = 119/127 (93%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct: 239 ggcggggcgtgcgggtacggtaacctgtacagcactgggtacggcacgaacacggcggcg 298
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgc 191
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct: 299 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctaccagctgcgctgc 358
Query: 192 gacaacg 198
|||||||
Sbjct: 359 gacaacg 365
>gb|CA002659.1|CA002659 HS08C15r HS Hordeum vulgare subsp. vulgare cDNA clone HS08C15
5-PRIME, mRNA sequence
Length = 364
Score = 182 bits (92), Expect = 2e-044
Identities = 110/116 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct: 249 ggcggggcgtgcgggtacggtaacctgtacagcactgggtacggcacgaacacggcggcg 308
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcg 187
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 309 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcg 364
>gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004I04f, mRNA sequence
Length = 894
Score = 178 bits (90), Expect = 2e-043
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 216 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 275
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 276 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcntgctacgagct 328
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 176 bits (89), Expect = 9e-043
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 211 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 270
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 271 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagct 323
Score = 127 bits (64), Expect = 8e-028
Identities = 139/164 (84%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||| ||||||||| ||
Sbjct: 342 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccggccaactacgcgct 401
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
||| ||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 402 ggccaacgacgacggcggctggtgcaacccgccgcgcgcccacttcgacatggcaaagcc 461
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccg 372
|||| ||||| |||| ||||||||||||||||||||||
Sbjct: 462 cgcctacctccagatcggtatctaccgcgccggcatcgtgcccg 505
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 176 bits (89), Expect = 9e-043
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 208 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 267
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 268 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagct 320
Score = 141 bits (71), Expect = 5e-032
Identities = 116/131 (88%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| ||
Sbjct: 339 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacgcgct 398
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
|||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 399 gcccaacgacgacggcggctggtgcaacccgccgcgcgcccacttcgacatggcagagcc 458
Query: 329 ggccttcctcc 339
|||| |||||
Sbjct: 459 cgcctacctcc 469
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 176 bits (89), Expect = 9e-043
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 219 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 278
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 279 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagct 331
Score = 131 bits (66), Expect = 5e-029
Identities = 102/114 (89%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| ||
Sbjct: 350 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacgcgct 409
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggc 322
|||| ||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 410 gcccaacgacgacggcggctggtgcaacccgccgcgcgcccacttcgacatggc 463
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 170 bits (86), Expect = 6e-041
Identities = 209/250 (83%)
Strand = Plus / Plus
Query: 237 gccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaac 296
||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 117 gccaccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcggctggtgcaac 176
Query: 297 ccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtaccgc 356
|| || ||| | |||||||||||| || |||| | ||||| |||||||||| ||||||
Sbjct: 177 cctccccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgcgctctaccgc 236
Query: 357 gccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccgg 416
|||||||| || |||||| | | | | || ||| ||||| |||||||||||||||| ||
Sbjct: 237 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 296
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggcgcc 476
||||| ||||| || ||||| |||||||||||||||||||| |||||||||| ||| ||
Sbjct: 297 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggcccc 356
Query: 477 ggcgacgtgc 486
||||||||||
Sbjct: 357 ggcgacgtgc 366
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaac 563
|||||||| ||||||||||||||||||
Sbjct: 420 aactgggggcagaactggcagagcaac 446
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 170 bits (86), Expect = 6e-041
Identities = 209/250 (83%)
Strand = Plus / Plus
Query: 237 gccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaac 296
||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 134 gccaccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcggctggtgcaac 193
Query: 297 ccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtaccgc 356
|| || ||| | |||||||||||| || |||| | ||||| |||||||||| ||||||
Sbjct: 194 cctccccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgcgctctaccgc 253
Query: 357 gccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccgg 416
|||||||| || |||||| | | | | || ||| ||||| |||||||||||||||| ||
Sbjct: 254 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 313
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggcgcc 476
||||| ||||| || ||||| |||||||||||||||||||| |||||||||| ||| ||
Sbjct: 314 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggcccc 373
Query: 477 ggcgacgtgc 486
||||||||||
Sbjct: 374 ggcgacgtgc 383
Score = 52.0 bits (26), Expect = 4e-005
Identities = 64/74 (86%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 122 cacggcggcgctgagcacggcgctgttcaacgacgg-cgcggcgtgcgggtcctgctacg 180
||||||||| |||||||||||||| |||||| |||| | | || |||||| |||||| ||
Sbjct: 1 cacggcggccctgagcacggcgctcttcaacaacggcctcagc-tgcggggcctgcttcg 59
Query: 181 agctgcggtgcgac 194
|| |||||||||||
Sbjct: 60 aggtgcggtgcgac 73
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaac 563
|||||||| ||||||||||||||||||
Sbjct: 437 aactgggggcagaactggcagagcaac 463
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 170 bits (86), Expect = 6e-041
Identities = 209/250 (83%)
Strand = Plus / Plus
Query: 237 gccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaac 296
||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 138 gccaccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcggctggtgcaac 197
Query: 297 ccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtaccgc 356
|| || ||| | |||||||||||| || |||| | ||||| |||||||||| ||||||
Sbjct: 198 cctccccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgcgctctaccgc 257
Query: 357 gccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccgg 416
|||||||| || |||||| | | | | || ||| ||||| |||||||||||||||| ||
Sbjct: 258 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 317
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggcgcc 476
||||| ||||| || ||||| |||||||||||||||||||| |||||||||| ||| ||
Sbjct: 318 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggcccc 377
Query: 477 ggcgacgtgc 486
||||||||||
Sbjct: 378 ggcgacgtgc 387
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaac 563
|||||||| ||||||||||||||||||
Sbjct: 441 aactgggggcagaactggcagagcaac 467
>gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011P08f, mRNA sequence
Length = 1124
Score = 168 bits (85), Expect = 2e-040
Identities = 106/113 (93%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 221 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 280
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
|||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 281 ctgagcacggcgctgttcaacgacggcgcggcttgcgggtcgtgctacgagct 333
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 168 bits (85), Expect = 2e-040
Identities = 228/273 (83%), Gaps = 2/273 (0%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaac-tacggcc 267
|||| ||||||||| ||||||| |||| | ||||||| | |||||||||||| |||| |
Sbjct: 365 gtgcgtgccgggcagcatcaccatcaccgtcaccaacctttgcccgcccaacctacgcgc 424
Query: 268 tccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagc 327
| |||| |||| |||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 425 tgcccaacgaccacggcggctggtgcaacccgccgcgcgcccacttcgacatggcagagc 484
Query: 328 cggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccg-tcgcgttcaggaga 386
| |||| ||||| |||| |||||||||||||||||||||| | | | | ||||
Sbjct: 485 ccgcctacctccagatcggtatctaccgcgccggcatcgtgcccgttttcctaccggagg 544
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
| ||| || |||||||| ||||| || |||||||||||||||| ||||||||||| |||
Sbjct: 545 gggccctgtgtgaagaaaggcgggatgaggttcaccatcaacggccactcctactttaac 604
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggc 479
|||| ||| | |||||||||||| |||||||||
Sbjct: 605 ctggggcttgagaccaacgtggccggcgccggc 637
Score = 145 bits (73), Expect = 3e-033
Identities = 103/113 (91%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||| | ||| | ||||||||||||||||| |||||||||| ||| ||||||
Sbjct: 234 ggcggcgcgtgctgctaccggaacctgtacagcacgggttacggcacgaacactgcggcg 293
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
|||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 294 ctgagcacggcgctgttcaacgacagcgcggcgtgcgggtcgtgctacgagct 346
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 165 bits (83), Expect = 4e-039
Identities = 218/262 (83%), Gaps = 1/262 (0%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | |||||||||||||||| ||
Sbjct: 199 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacgcgct 258
Query: 269 ccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagcc 328
|||| ||||||||||||||||||||||||||||||| | |||||| ||||||| |||||
Sbjct: 259 gcccaacgacgacggcggctggtgcaacccgccgcgcgcccacttcnacatggcagagcc 318
Query: 329 ggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagt 388
|||| ||||| |||| ||||| ||||||||||||||||| | | | |||| ||
Sbjct: 319 cgcctacctccagatcggtatctaccgggccggcatcgtgcccgtttcctaccggagggt 378
Query: 389 gccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaa-cc 447
||| || |||||||||||||| || |||| || || ||||| ||| |||||||||| |
Sbjct: 379 gccctgtgtgaagaagggcgggatgaggtttacgatgaacggccacgcctacttcaagcg 438
Query: 448 tggtgctggtgaccaacgtggc 469
|||| |||| ||||||||||||
Sbjct: 439 tggttctggagaccaacgtggc 460
Score = 163 bits (82), Expect = 1e-038
Identities = 105/113 (92%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 68 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 127
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
|||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 128 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtggtgctacnagct 180
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 163 bits (82), Expect = 1e-038
Identities = 205/246 (83%)
Strand = Plus / Plus
Query: 241 ccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgc 300
||||||||||||||||||||| |||| | ||||| |||||||||||||||||| |
Sbjct: 15 ccaacttctgcccgcccaacttcggcgagtcgtccgacgccggcggctggtgcaaccctc 74
Query: 301 cgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccg 360
| ||| | |||||||||||| || |||| | ||||| |||||||||| ||||||||||
Sbjct: 75 cccgcgcccacttcgacatgtcccagcccgtcttccagcgcatcgcgctctaccgcgccg 134
Query: 361 gcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccggttca 420
|||| || |||||| | | | | || ||| ||||| |||||||||||||||| ||||||
Sbjct: 135 gcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcaggttca 194
Query: 421 ccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggcg 480
| ||||| || ||||| |||||||||||||||||||| |||||||||| ||| ||||||
Sbjct: 195 cgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggccccggcg 254
Query: 481 acgtgc 486
||||||
Sbjct: 255 acgtgc 260
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaac 563
|||||||| ||||||||||||||||||
Sbjct: 314 aactgggggcagaactggcagagcaac 340
>gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023B18f, mRNA sequence
Length = 570
Score = 161 bits (81), Expect = 6e-038
Identities = 105/113 (92%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 209 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 268
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct: 269 ctgagcacggcgctgttcaacaacggcgcggcgtgcgggtcgtgctacaagct 321
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacg 264
|||| ||||||||| ||||||| |||| ||||||||| | ||||||||||||||||
Sbjct: 340 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgcccgcccaactacg 395
>gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010L18f, mRNA sequence
Length = 677
Score = 157 bits (79), Expect = 9e-037
Identities = 104/113 (92%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 223 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 282
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 283 ctgagcacggcgctgttcaacnacngcgcggcgtgcgggtcgtgctacaagct 335
Score = 83.8 bits (42), Expect = 1e-014
Identities = 102/121 (84%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 209 gtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcct 268
|||| ||||||||| ||||||| |||| ||||||||| | ||||| ||||||||| ||
Sbjct: 354 gtgcgtgccgggcagcatcaccatcaccgccaccaacctttgccccgccaactacgcnct 413
Query: 269 ccccagcgacgacggcggctggtgcaa-cccgccgcgcccgcacttcgacatggccgagc 327
|||| |||||||||||| |||||||| ||| || ||| | |||||||||||||| ||||
Sbjct: 414 gcccaacgacgacggcgggtggtgcaacccccccccgcgcccacttcgacatggcagagc 473
Query: 328 c 328
|
Sbjct: 474 c 474
>gb|AV917956.1|AV917956 AV917956 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 3', mRNA sequence
Length = 567
Score = 153 bits (77), Expect = 1e-035
Identities = 131/149 (87%)
Strand = Plus / Minus
Query: 539 ctggggccagaactggcagagcaactcgtacctggacaggcaggcgctctcgttccaggt 598
||||||| |||||||||||||||| | | ||||||| | ||| ||||| ||| |||
Sbjct: 567 ctggggcatgaactggcagagcaacaccttcctggacggccagtgcctctccttcagggt 508
Query: 599 caccgccagcgacggccgcaccgtcaccagcaacggcgccgtccccgccggctggcagtt 658
|||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 507 cacctccagcgacggccgcaccgtcaccagcaacgccgccgcgcccgccggctggcagtt 448
Query: 659 cggccagaccttcgagggcggccagttct 687
|||||||||||||||||||| ||||||||
Sbjct: 447 cggccagaccttcgagggcgcccagttct 419
Score = 46.1 bits (23), Expect = 0.002
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttcccttttctc 935
|||| |||||||||||| || |||||||||| ||||||||| |||| ||||
Sbjct: 237 gctacgctgaggctgctgat-tagcacccgcttagacgttttccttctctc 188
>gb|CA001586.1|CA001586 HS17G02u HS Hordeum vulgare subsp. vulgare cDNA clone HS17G02
3-PRIME, mRNA sequence
Length = 553
Score = 143 bits (72), Expect = 1e-032
Identities = 87/92 (94%)
Strand = Plus / Minus
Query: 596 ggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtccccgccggctggca 655
||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 550 ggtcacctccagcgacggccgcaccgtcaccagcaacgccgccgcgcccgccggctggca 491
Query: 656 gttcggccagaccttcgagggcggccagttct 687
||||||||||||||||||||||| ||||||||
Sbjct: 490 gttcggccagaccttcgagggcgcccagttct 459
Score = 46.1 bits (23), Expect = 0.002
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttcccttttctc 935
|||| |||||||||||| || |||||||||| ||||||||| |||| ||||
Sbjct: 277 gctacgctgaggctgctgat-tagcacccgcttagacgttttccttctctc 228
>gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019G01f, mRNA sequence
Length = 669
Score = 139 bits (70), Expect = 2e-031
Identities = 105/114 (92%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 202 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 261
Query: 132 ctgagcacggcgctgttcaacgacgg-cgcggcgtgcgggtcctgctacgagct 184
||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||
Sbjct: 262 ctgagcacggcgctgtt-aacaacggncgcggcgtgcgggtcgtgctacgagct 314
>gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014B22f, mRNA sequence
Length = 660
Score = 137 bits (69), Expect = 8e-031
Identities = 98/108 (90%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 204 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 263
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctac 179
||||||||||||||||||||| || | |||| |||||||||| |||||
Sbjct: 264 ctgagcacggcgctgttcaacaacagngcggagtgcgggtcccgctac 311
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 131 bits (66), Expect = 5e-029
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 223 ccatcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacg 282
|||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct: 319 ccatcaccatcacggccaccaacttctgcccgcccaactacgccctggccagcgacaacg 378
Query: 283 gcggctggtgcaacccgccgcgcccgcacttcgacatg 320
|||| ||||||||||||||||| | |||||||||||||
Sbjct: 379 gcggatggtgcaacccgccgcggcagcacttcgacatg 416
>gb|CA029290.1|CA029290 HZ64M12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64M12
5-PRIME, mRNA sequence
Length = 358
Score = 131 bits (66), Expect = 5e-029
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 81 tgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacg 140
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgcgggtacgggaacctgtactcgacggggtacggcacgagcacggcggcgctgagcacg 244
Query: 141 gcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||||||||||||| | ||||||
Sbjct: 245 gcgctgttcaacgacggcgcgtcatgcggg 274
>gb|AL500971.1|AL500971 AL500971 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12u 3', mRNA sequence
Length = 567
Score = 129 bits (65), Expect = 2e-028
Identities = 147/173 (84%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 516 gggtggcagcccatgtcccggaact-ggggccagaactggcagagcaactcgtacctgga 574
||||||||| |||||||||| |||| ||||||||||||||||||||||| || |||| ||
Sbjct: 522 gggtggcaggccatgtcccgcaacttggggccagaactggcagagcaacgcggacctcga 463
Query: 575 caggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacgg 634
| | ||| ||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 462 cggccagagcctctccttccgggtcaccctcagcgacggccgcaccgtcaccagcaacaa 403
Query: 635 cgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
||||| ||| ||||||||| || || ||||||||||| || ||||||||||
Sbjct: 402 cgccgccccggccggctggtcctttggacagaccttcgaaggaggccagttct 350
>gb|BI959974.1|BI959974 HVSMEn0022L12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022L12f, mRNA sequence
Length = 707
Score = 123 bits (62), Expect = 1e-026
Identities = 95/106 (89%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||| | ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 208 ggcggcgcgtgcggctactggaacctgtacagcacgggttacggcacgaacacggcggcg 267
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgct 177
|||||||||||||||||||| || ||||||||| |||||| ||||
Sbjct: 268 ctgagcacggcgctgttcaattacagcgcggcgtccgggtcgtgct 313
>gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022D10f, mRNA sequence
Length = 768
Score = 121 bits (61), Expect = 5e-026
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 183 ggcggcgcgtgcggctacgggaacctgtacagcacgggttacggcacgaacacggcggcg 242
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagct 184
||||||||| |||| |||||||| | ||| | ||||| ||||||||||||||
Sbjct: 243 ctgagcacgcggctgctcaacgaccgtgcgccctgcggatcctgctacgagct 295
Score = 56.0 bits (28), Expect = 2e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 214 tgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactacggcctcccca 273
||||||||| ||||| | |||| | ||||||| | ||||||||||||||| || || |
Sbjct: 319 tgccgggcagcatcagcatcaccggcaccaaccttggcccgcccaactacgcgctgccga 378
Query: 274 gcgacgacggcggctggtgcaacccgccgcgc 305
||||||| | ||||||||||||||| |||||
Sbjct: 379 acgacgacagaggctggtgcaacccggcgcgc 410
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 147,478
Number of Sequences: 312970
Number of extensions: 147478
Number of successful extensions: 45130
Number of sequences better than 0.5: 98
Number of HSP's better than 0.5 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44823
Number of HSP's gapped (non-prelim): 257
length of query: 1022
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1003
effective length of database: 169,188,109
effective search space: 169695673327
effective search space used: 169695673327
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)