BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696537.2.1
(592 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF625611.2|BF625611 HVSMEa0011O14f Hordeum vulgare seedl... 141 3e-032
gb|CD662384.1|CD662384 UCRHV18_02aa05_b1 Drought-stressed D... 141 3e-032
gb|AV928554.1|AV928554 AV928554 K. Sato unpublished cDNA li... 127 4e-028
gb|BF255168.2|BF255168 HVSMEf0006C06f Hordeum vulgare seedl... 119 1e-025
gb|BQ135330.1|BQ135330 LP10034 Lemma/palea-enriched cDNA li... 119 1e-025
gb|CA001227.1|CA001227 HS18N03u HS Hordeum vulgare subsp. v... 115 2e-024
gb|AW983496.2|AW983496 HVSMEg0010N10f Hordeum vulgare pre-a... 90 1e-016
gb|CA005899.1|CA005899 HU08G03u HU Hordeum vulgare subsp. v... 86 2e-015
gb|AV924580.1|AV924580 AV924580 K. Sato unpublished cDNA li... 78 4e-013
gb|BG369930.2|BG369930 HVSMEi0026J11f Hordeum vulgare 20 DA... 68 4e-010
gb|BQ663743.1|BQ663743 HU03N03u HU Hordeum vulgare subsp. v... 64 6e-009
gb|CA005388.1|CA005388 HU10K10u HU Hordeum vulgare subsp. v... 64 6e-009
gb|BF629044.2|BF629044 HVSMEb0009K16f Hordeum vulgare seedl... 60 9e-008
gb|BG343770.2|BG343770 HVSMEg0006L08f Hordeum vulgare pre-a... 60 9e-008
gb|BQ466698.1|BQ466698 HS01E20T HS Hordeum vulgare subsp. v... 60 9e-008
gb|BQ467017.1|BQ467017 HS02E20r HS Hordeum vulgare subsp. v... 60 9e-008
gb|AV927254.1|AV927254 AV927254 K. Sato unpublished cDNA li... 56 1e-006
gb|AV923368.1|AV923368 AV923368 K. Sato unpublished cDNA li... 52 2e-005
gb|AV927080.1|AV927080 AV927080 K. Sato unpublished cDNA li... 52 2e-005
gb|BQ465500.1|BQ465500 HU03N03r HU Hordeum vulgare subsp. v... 52 2e-005
gb|CA002379.1|CA002379 HS07F02r HS Hordeum vulgare subsp. v... 52 2e-005
gb|AV923725.1|AV923725 AV923725 K. Sato unpublished cDNA li... 48 3e-004
gb|CA007573.1|CA007573 HU08G03r HU Hordeum vulgare subsp. v... 46 0.001
gb|CA008104.1|CA008104 HU09O15r HU Hordeum vulgare subsp. v... 40 0.080
gb|CA008721.1|CA008721 HU11O06r HU Hordeum vulgare subsp. v... 40 0.080
>gb|BF625611.2|BF625611 HVSMEa0011O14f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011O14f, mRNA sequence
Length = 638
Score = 141 bits (71), Expect = 3e-032
Identities = 275/343 (80%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 521 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 462
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 461 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 402
Query: 369 gatagatcgctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcgg 428
| |||| | ||||||| || | || || |||| ||| || ||||| ||||| ||||
Sbjct: 401 ggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcgg 342
Query: 429 acatgttgcaggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatct 488
||||| |||||| |||| | ||| |||||||| || || || || || | |||||||
Sbjct: 341 tcatgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatct 282
Query: 489 cgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcg 548
||| ||||| |||| ||||| ||||| |||||||| || |||||||| | | |||
Sbjct: 281 cgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcg 222
Query: 549 agtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 221 agtcaaatagatactcgtagcagacagggcagttttgatgcat 179
>gb|CD662384.1|CD662384 UCRHV18_02aa05_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02aa05, mRNA sequence
Length = 896
Score = 141 bits (71), Expect = 3e-032
Identities = 275/343 (80%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 450 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 509
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 510 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 569
Query: 369 gatagatcgctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcgg 428
| |||| | ||||||| || | || || |||| ||| || ||||| ||||| ||||
Sbjct: 570 ggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcgg 629
Query: 429 acatgttgcaggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatct 488
||||| |||||| |||| | ||| |||||||| || || || || || | |||||||
Sbjct: 630 tcatgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatct 689
Query: 489 cgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcg 548
||| ||||| |||| ||||| ||||| |||||||| || |||||||| | | |||
Sbjct: 690 cgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcg 749
Query: 549 agtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 750 agtcaaatagatactcgtagcagacagggcagttttgatgcat 792
>gb|AV928554.1|AV928554 AV928554 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdn20 3', mRNA sequence
Length = 751
Score = 127 bits (64), Expect = 4e-028
Identities = 275/344 (79%), Gaps = 1/344 (0%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 404 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 463
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 464 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 523
Query: 369 gatagatcgctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcgg 428
| |||| | ||||||| || | || || |||| ||| || ||||| ||||| ||||
Sbjct: 524 ggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcgg 583
Query: 429 acatgttgcaggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatct 488
||||| |||||| |||| | ||| |||||||| || || || || || | |||||||
Sbjct: 584 tcatgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatct 643
Query: 489 cgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcg 548
||| ||||| |||| ||||| ||||| |||||||| || |||||||| | | |||
Sbjct: 644 cgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcg 703
Query: 549 agtcgaatagatactccatgcagaca-gggcagttgtgatgcat 591
|||| ||||||||||| ||||||| |||||||| ||||||||
Sbjct: 704 agtcaaatagatactcgtagcagacaggggcagttttgatgcat 747
>gb|BF255168.2|BF255168 HVSMEf0006C06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006C06f, mRNA sequence
Length = 605
Score = 119 bits (60), Expect = 1e-025
Identities = 117/136 (86%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 232 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 173
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 172 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 113
Query: 369 gatagatcgctggcat 384
| |||| | |||||||
Sbjct: 112 ggtagaactctggcat 97
>gb|BQ135330.1|BQ135330 LP10034 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-34,
mRNA sequence
Length = 338
Score = 119 bits (60), Expect = 1e-025
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 56 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 115
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 116 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 175
Query: 369 gatagatcgctggcat 384
| |||| | |||||||
Sbjct: 176 ggtagaactctggcat 191
>gb|CA001227.1|CA001227 HS18N03u HS Hordeum vulgare subsp. vulgare cDNA clone HS18N03
3-PRIME, mRNA sequence
Length = 568
Score = 115 bits (58), Expect = 2e-024
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 439 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 498
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccataccatcttcttct 368
|||| ||||| | |||||| | || ||||||||||| ||||||||||||||||||||||
Sbjct: 499 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 558
Query: 369 gataga 374
| ||||
Sbjct: 559 ggtaga 564
>gb|AW983496.2|AW983496 HVSMEg0010N10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010N10f, mRNA sequence
Length = 884
Score = 89.7 bits (45), Expect = 1e-016
Identities = 102/121 (84%)
Strand = Plus / Minus
Query: 264 gggtgttgtaagagctgcatccagggcacttgtgcgccaagatgtggaactgcacgttgg 323
||||||||||| ||||||| || || ||||| ||||||| | |||||| ||||| | |
Sbjct: 437 gggtgttgtaaaagctgcacccgggacacttttgcgccagaacgtggaagcgcacgctcg 378
Query: 324 acgtcacgccacagtcgttgcaaaggatccataccatcttcttctgatagatcgctggca 383
||||| | || ||||||||||| ||||||||||||||||||||||| |||| | ||||||
Sbjct: 377 acgtcgccccgcagtcgttgcagaggatccataccatcttcttctggtagaactctggca 318
Query: 384 t 384
|
Sbjct: 317 t 317
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 546 tcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 154 tcgagtcaaatagatactcgtagcagacagggcagttttgatgcat 109
>gb|CA005899.1|CA005899 HU08G03u HU Hordeum vulgare subsp. vulgare cDNA clone HU08G03
3-PRIME, mRNA sequence
Length = 545
Score = 85.7 bits (43), Expect = 2e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 439 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 498
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccat 355
|||| ||||| | |||||| | || ||||||||||| |||||||||
Sbjct: 499 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccat 545
>gb|AV924580.1|AV924580 AV924580 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16c02 5', mRNA sequence
Length = 597
Score = 77.8 bits (39), Expect = 4e-013
Identities = 87/103 (84%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 154 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 95
Query: 309 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggat 351
|||| ||||| | |||||| | || ||||||||||| |||||
Sbjct: 94 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggat 52
>gb|BG369930.2|BG369930 HVSMEi0026J11f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0026J11f, mRNA sequence
Length = 682
Score = 67.9 bits (34), Expect = 4e-010
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 275 gagctgcatccagggcacttgtgcgccaagatgtggaactgcacgttggacgtcacgcca 334
|||||||| || || || || ||||||| || |||||| ||||| | |||||| | ||
Sbjct: 682 gagctgcacccgggacatttttgcgccaggacgtggaagcgcacgcttgacgtcgccccg 623
Query: 335 cagtcgttgcaaaggatccataccatcttcttctgatagatcgctggcat 384
||||| ||||| ||||||||||||||||||||||| |||| | |||||||
Sbjct: 622 cagtctttgcagaggatccataccatcttcttctggtagaactctggcat 573
Score = 67.9 bits (34), Expect = 4e-010
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| ||||| |||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 475 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 416
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 415 atggtcgagtcaaatagatactcgtagcagacagggcagttgtgatgcat 366
>gb|BQ663743.1|BQ663743 HU03N03u HU Hordeum vulgare subsp. vulgare cDNA clone HU03N03
3-PRIME, mRNA sequence
Length = 505
Score = 63.9 bits (32), Expect = 6e-009
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 434 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 493
Query: 309 ggaa 312
||||
Sbjct: 494 ggaa 497
>gb|CA005388.1|CA005388 HU10K10u HU Hordeum vulgare subsp. vulgare cDNA clone HU10K10
3-PRIME, mRNA sequence
Length = 528
Score = 63.9 bits (32), Expect = 6e-009
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 308
|||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 439 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 498
Query: 309 ggaa 312
||||
Sbjct: 499 ggaa 502
>gb|BF629044.2|BF629044 HVSMEb0009K16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009K16f, mRNA sequence
Length = 852
Score = 60.0 bits (30), Expect = 9e-008
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| ||||| |||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 685 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 626
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 625 atggtcgagtcaaatagatactcgtagcagacagggcagttttgatgcat 576
>gb|BG343770.2|BG343770 HVSMEg0006L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006L08f, mRNA sequence
Length = 996
Score = 60.0 bits (30), Expect = 9e-008
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| ||||| |||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 654 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 595
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 594 atggtcgagtcaaatagatactcgtagcagacagggcagttttgatgcat 545
>gb|BQ466698.1|BQ466698 HS01E20T HS Hordeum vulgare subsp. vulgare cDNA clone HS01E20
5-PRIME, mRNA sequence
Length = 583
Score = 60.0 bits (30), Expect = 9e-008
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| ||||| |||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 522 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 463
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 462 atggtcgagtcaaatagatactcgtagcagacagggcagttttgatgcat 413
>gb|BQ467017.1|BQ467017 HS02E20r HS Hordeum vulgare subsp. vulgare cDNA clone HS02E20
5-PRIME, mRNA sequence
Length = 587
Score = 60.0 bits (30), Expect = 9e-008
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 482 ctcatctcgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagct 541
|||||||||| ||||| |||| ||||| ||||| |||||||| || |||||||| |
Sbjct: 522 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 463
Query: 542 ttcatcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
| ||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 462 atggtcgagtcaaatagatactcgtagcagacagggcagttttgatgcat 413
>gb|AV927254.1|AV927254 AV927254 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1d06 3', mRNA sequence
Length = 431
Score = 56.0 bits (28), Expect = 1e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgc 300
|||||||||||| || |||||||||||||||||| || || ||||| |||||
Sbjct: 380 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgc 431
>gb|AV923368.1|AV923368 AV923368 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12n20 5', mRNA sequence
Length = 645
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 546 tcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 640 tcgagtcaaatagatactcgtagcagacagggcagttttgatgcat 595
>gb|AV927080.1|AV927080 AV927080 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26k21 5', mRNA sequence
Length = 605
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 546 tcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 605 tcgagtcaaatagatactcgtagcagacagggcagttttgatgcat 560
>gb|BQ465500.1|BQ465500 HU03N03r HU Hordeum vulgare subsp. vulgare cDNA clone HU03N03
5-PRIME, mRNA sequence
Length = 575
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 546 tcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 523 tcgagtcaaatagatactcgtagcagacagggcagttttgatgcat 478
>gb|CA002379.1|CA002379 HS07F02r HS Hordeum vulgare subsp. vulgare cDNA clone HS07F02
5-PRIME, mRNA sequence
Length = 503
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 546 tcgagtcgaatagatactccatgcagacagggcagttgtgatgcat 591
||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 458 tcgagtcaaatagatactcgtagcagacagggcagttttgatgcat 413
>gb|AV923725.1|AV923725 AV923725 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1d06 5', mRNA sequence
Length = 475
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 249 cgcccctcgtctgccgggtgttgtaagagctg 280
|||||||||||| || ||||||||||||||||
Sbjct: 32 cgcccctcgtctccctggtgttgtaagagctg 1
>gb|CA007573.1|CA007573 HU08G03r HU Hordeum vulgare subsp. vulgare cDNA clone HU08G03
5-PRIME, mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 549 agtcgaatagatactccatgcagacagggcagttgtgatgcat 591
|||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 592 agtcaaatagatactcgtagcagacagggcagttttgatgcat 550
>gb|CA008104.1|CA008104 HU09O15r HU Hordeum vulgare subsp. vulgare cDNA clone HU09O15
5-PRIME, mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.080
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 568 gcagacagggcagttgtgatgcat 591
||||||||||||||| ||||||||
Sbjct: 607 gcagacagggcagttttgatgcat 584
>gb|CA008721.1|CA008721 HU11O06r HU Hordeum vulgare subsp. vulgare cDNA clone HU11O06
5-PRIME, mRNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.080
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 568 gcagacagggcagttgtgatgcat 591
||||||||||||||| ||||||||
Sbjct: 607 gcagacagggcagttttgatgcat 584
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46,705
Number of Sequences: 312970
Number of extensions: 46705
Number of successful extensions: 10962
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10932
Number of HSP's gapped (non-prelim): 30
length of query: 592
length of database: 175,134,539
effective HSP length: 19
effective length of query: 573
effective length of database: 169,188,109
effective search space: 96944786457
effective search space used: 96944786457
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)