BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3671909.2.1
(767 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA013705.1|CA013705 HT09E03r HT Hordeum vulgare subsp. v... 101 3e-020
gb|CA011333.1|CA011333 HT06E05u HT Hordeum vulgare subsp. v... 96 2e-018
gb|CA012725.1|CA012725 HT06E05r HT Hordeum vulgare subsp. v... 96 2e-018
gb|BE195199.3|BE195199 HVSMEh0088J02f Hordeum vulgare 5-45 ... 90 1e-016
gb|BE421487.1|BE421487 HWM009.G12 ITEC HWM Barley Leaf Libr... 72 3e-011
gb|BF259778.3|BF259778 HVSMEf0020D20f Hordeum vulgare seedl... 52 3e-005
gb|CA010666.1|CA010666 HT09E03u HT Hordeum vulgare subsp. v... 52 3e-005
gb|CA012057.1|CA012057 HT04F04r HT Hordeum vulgare subsp. v... 52 3e-005
gb|BE060200.3|BE060200 HVSMEg0011E01f Hordeum vulgare pre-a... 50 1e-004
gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedl... 42 0.026
gb|BG418349.2|BG418349 HVSMEk0022G14f Hordeum vulgare testa... 42 0.026
gb|AY735914.1| Hordeum vulgare subsp. vulgare clone cLN15-4... 42 0.026
gb|BF629412.3|BF629412 HVSMEb0012D18f Hordeum vulgare seedl... 40 0.10
gb|CB881714.1|CB881714 HM10K16w HM Hordeum vulgare subsp. v... 40 0.10
gb|BF630974.2|BF630974 HVSMEb0014J14f Hordeum vulgare seedl... 38 0.41
gb|BF627303.3|BF627303 HVSMEb0004I01f Hordeum vulgare seedl... 38 0.41
gb|AV912967.1|AV912967 AV912967 K. Sato unpublished cDNA li... 38 0.41
gb|AV917230.1|AV917230 AV917230 K. Sato unpublished cDNA li... 38 0.41
gb|AV917240.1|AV917240 AV917240 K. Sato unpublished cDNA li... 38 0.41
gb|AV917724.1|AV917724 AV917724 K. Sato unpublished cDNA li... 38 0.41
gb|AV917809.1|AV917809 AV917809 K. Sato unpublished cDNA li... 38 0.41
gb|AV918924.1|AV918924 AV918924 K. Sato unpublished cDNA li... 38 0.41
gb|AV919113.1|AV919113 AV919113 K. Sato unpublished cDNA li... 38 0.41
gb|AV919240.1|AV919240 AV919240 K. Sato unpublished cDNA li... 38 0.41
gb|AV919454.1|AV919454 AV919454 K. Sato unpublished cDNA li... 38 0.41
gb|AV920535.1|AV920535 AV920535 K. Sato unpublished cDNA li... 38 0.41
gb|AV922397.1|AV922397 AV922397 K. Sato unpublished cDNA li... 38 0.41
gb|AV922407.1|AV922407 AV922407 K. Sato unpublished cDNA li... 38 0.41
gb|AV922497.1|AV922497 AV922497 K. Sato unpublished cDNA li... 38 0.41
gb|BJ463386.1|BJ463386 BJ463386 K. Sato unpublished cDNA li... 38 0.41
gb|BJ464883.1|BJ464883 BJ464883 K. Sato unpublished cDNA li... 38 0.41
gb|BJ465805.1|BJ465805 BJ465805 K. Sato unpublished cDNA li... 38 0.41
gb|BJ466231.1|BJ466231 BJ466231 K. Sato unpublished cDNA li... 38 0.41
gb|BJ466813.1|BJ466813 BJ466813 K. Sato unpublished cDNA li... 38 0.41
gb|BJ466913.1|BJ466913 BJ466913 K. Sato unpublished cDNA li... 38 0.41
gb|BJ467028.1|BJ467028 BJ467028 K. Sato unpublished cDNA li... 38 0.41
gb|BQ467933.1|BQ467933 HR01G08r HR Hordeum vulgare subsp. v... 38 0.41
gb|BQ471267.1|BQ471267 HV01P03T HV Hordeum vulgare subsp. v... 38 0.41
gb|BQ471971.1|BQ471971 HV04A16r HV Hordeum vulgare subsp. v... 38 0.41
gb|BQ664118.1|BQ664118 HV01P03w HV Hordeum vulgare subsp. v... 38 0.41
gb|BM101180.2|BM101180 EBpi01_SQ003_C01_R pistil, 1 DPA, no... 38 0.41
gb|CA015964.1|CA015964 HV11L11u HV Hordeum vulgare subsp. v... 38 0.41
gb|CA016358.1|CA016358 HV09D15u HV Hordeum vulgare subsp. v... 38 0.41
gb|CA017757.1|CA017757 HV06C16r HV Hordeum vulgare subsp. v... 38 0.41
gb|AY735915.1| Hordeum vulgare subsp. vulgare clone cLN15-4... 38 0.41
gb|AY735916.1| Hordeum vulgare subsp. vulgare clone cLN15-4... 38 0.41
>gb|CA013705.1|CA013705 HT09E03r HT Hordeum vulgare subsp. vulgare cDNA clone HT09E03
5-PRIME, mRNA sequence
Length = 609
Score = 101 bits (51), Expect = 3e-020
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||| || |||||||| || | ||| ||||||| |||||| |||||||||| |||||
Sbjct: 541 ctcccaatcaaagtggaagagcaagctcgcgagcgggagctctacgttggcgacgccgaa 482
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcg 567
|||||| || || |||||||| |||||||||||||||||||||| | ||||||||
Sbjct: 481 cgccatcccagggcacatcctgcggccggcgccgaacggcaggaacacgaagtcg 427
>gb|CA011333.1|CA011333 HT06E05u HT Hordeum vulgare subsp. vulgare cDNA clone HT06E05
3-PRIME, mRNA sequence
Length = 549
Score = 95.6 bits (48), Expect = 2e-018
Identities = 84/96 (87%)
Strand = Plus / Plus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||||||||||||||| || ||||| || |||| |||||||||| |||||| || ||
Sbjct: 332 ctcccagtcgaagtggaagagcaggctcgcaagcgggagctcgacgccggcgaggccaaa 391
Query: 513 cgccatgcccggacacatcctccggccggcgccgaa 548
||||||||| || |||||||| ||||||||||||||
Sbjct: 392 cgccatgccggggcacatcctgcggccggcgccgaa 427
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 599 cctcgaaccgctcggggcggaactcctcggg 629
||||||||||||| || ||||||||||||||
Sbjct: 481 cctcgaaccgctccggccggaactcctcggg 511
>gb|CA012725.1|CA012725 HT06E05r HT Hordeum vulgare subsp. vulgare cDNA clone HT06E05
5-PRIME, mRNA sequence
Length = 700
Score = 95.6 bits (48), Expect = 2e-018
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||||||||||||||| || ||||| || |||| |||||||||| |||||| || ||
Sbjct: 408 ctcccagtcgaagtggaagagcaggctcgcaagcgggagctcgacgccggcgaggccaaa 349
Query: 513 cgccatgcccggacacatcctccggccggcgccgaa 548
||||||||| || |||||||| ||||||||||||||
Sbjct: 348 cgccatgccggggcacatcctgcggccggcgccgaa 313
Score = 52.0 bits (26), Expect = 3e-005
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 599 cctcgaaccgctcggggcggaactcctcggggtcgcccggccagtacctgccgtcgcggc 658
||||||||||||| || |||||||||||||| || | |||||||| | |||||||||
Sbjct: 259 cctcgaaccgctccggccggaactcctcgggcgcgtcgggccagtagcgctcgtcgcggc 200
Query: 659 ccagcgcccagacgttcaccagcacggtggtgcccgcaggcacgtcgtagcccagcac 716
|||||||| |||| |||||||| ||||||| ||||||||||| ||| ||||
Sbjct: 199 atagcgcccaaccgttgaccagcacctgggtgccccgcggcacgtcgtatccctgcac 142
>gb|BE195199.3|BE195199 HVSMEh0088J02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088J02f, mRNA sequence
Length = 624
Score = 89.7 bits (45), Expect = 1e-016
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||| || ||||| || || | ||| ||||||| |||||| |||||||||| |||||
Sbjct: 466 ctcccaatcaaagtgnaagagcaagctcgcgagcgggagctctacgttggcgacgccgaa 407
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcg 567
|||||| | || |||||||| |||||||||||||||||||||| | ||||||||
Sbjct: 406 cgccatcncagggcacatcctgcggccggcgccgaacggcaggaacacgaagtcg 352
>gb|BE421487.1|BE421487 HWM009.G12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.G12, mRNA sequence
Length = 931
Score = 71.9 bits (36), Expect = 3e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 448 ggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagc 507
|||||||||||||| ||||| | ||| | ||| ||||||| |||||| ||| ||| ||
Sbjct: 208 ggcgcctcccagtcaaagtgaagcagcatgctagcgagcgggagctccacgccggccagg 149
Query: 508 ccgaacgccatgcccggacacatcctccggccggcgccgaacggcaggagctcgaa 563
||||||||||| || || ||||| || || || |||||||||||||| ||||||||
Sbjct: 148 ccgaacgccatcccggggcacattctgcgcccagcgccgaacggcagcagctcgaa 93
>gb|BF259778.3|BF259778 HVSMEf0020D20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020D20f, mRNA sequence
Length = 675
Score = 52.0 bits (26), Expect = 3e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 520 cccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttgaac 579
|||||||||||||||| |||| ||||| || |||||||||||||| |||||||||
Sbjct: 323 cccggacacatcctcctcccggacccgaaggggaggagctcgaagtctcggcccttgaag 264
Query: 580 tccacc 585
||||||
Sbjct: 263 tccacc 258
>gb|CA010666.1|CA010666 HT09E03u HT Hordeum vulgare subsp. vulgare cDNA clone HT09E03
3-PRIME, mRNA sequence
Length = 285
Score = 52.0 bits (26), Expect = 3e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||| || |||||||| || | ||| ||||||| |||||| |||||||||| |||||
Sbjct: 210 ctcccaatcaaagtggaagagcaagctcgcgagcgggagctctacgttggcgacgccgaa 269
Query: 513 cgccat 518
||||||
Sbjct: 270 cgccat 275
>gb|CA012057.1|CA012057 HT04F04r HT Hordeum vulgare subsp. vulgare cDNA clone HT04F04
5-PRIME, mRNA sequence
Length = 399
Score = 52.0 bits (26), Expect = 3e-005
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 599 cctcgaaccgctcggggcggaactcctcggggtcgcccggccagtacctgccgtcgcggc 658
||||||||||||| || |||||||||||||| || | |||||||| | |||||||||
Sbjct: 399 cctcgaaccgctccggccggaactcctcgggcgcgtcgggccagtagcgctcgtcgcggc 340
Query: 659 ccagcgcccagacgttcaccagcacggtggtgcccgcaggcacgtcgtagcccagcac 716
|||||||| |||| |||||||| ||||||| ||||||||||| ||| ||||
Sbjct: 339 atagcgcccaaccgttgaccagcacctgggtgccccgcggcacgtcgtatccctgcac 282
>gb|BE060200.3|BE060200 HVSMEg0011E01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011E01f, mRNA sequence
Length = 556
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 529 atcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttga 577
|||||||||||||| |||||||| | ||| |||||||| |||||||||
Sbjct: 107 atcctccggccggccccgaacgggatcagcccgaagtcgccgcccttga 59
>gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007H18f, mRNA sequence
Length = 531
Score = 42.1 bits (21), Expect = 0.026
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 520 cccggacacatcctccggccggcgccgaacggc 552
||||| || |||||||||||||| |||||||||
Sbjct: 496 cccgggcagatcctccggccggccccgaacggc 464
>gb|BG418349.2|BG418349 HVSMEk0022G14f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022G14f, mRNA sequence
Length = 422
Score = 42.1 bits (21), Expect = 0.026
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 529 atcctccggccggcgccgaacggcaggagctcgaagt 565
||||||| ||||||||||||||| | ||||| |||||
Sbjct: 61 atcctcctgccggcgccgaacgggatgagctagaagt 25
>gb|AY735914.1| Hordeum vulgare subsp. vulgare clone cLN15-45-37.1A.9 cytochrome
P450 (CYP P450) gene, partial cds
Length = 87
Score = 42.1 bits (21), Expect = 0.026
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 535 cggccggcgccgaacggcaggagctcgaa 563
|||||||||||||| ||||| ||||||||
Sbjct: 83 cggccggcgccgaagggcagaagctcgaa 55
>gb|BF629412.3|BF629412 HVSMEb0012D18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012D18f, mRNA sequence
Length = 846
Score = 40.1 bits (20), Expect = 0.10
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 523 ggacacatcctccggccggcgccgaacggcaggagctcg 561
||||| |||| |||||| |||| ||| ||||||||||||
Sbjct: 600 ggacagatccgccggcccgcgcngaagggcaggagctcg 562
>gb|CB881714.1|CB881714 HM10K16w HM Hordeum vulgare subsp. vulgare cDNA clone HM10K16
3-PRIME, mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.10
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 526 cacatcctccggccggcgccgaacggcaggagctcg 561
|||||||| || |||||||||||||| |||| ||||
Sbjct: 492 cacatcctgcgcccggcgccgaacgggaggaactcg 527
>gb|BF630974.2|BF630974 HVSMEb0014J14f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0014J14f, mRNA sequence
Length = 794
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 42 cggcccgcgccgaagggcaggagctcg 16
>gb|BF627303.3|BF627303 HVSMEb0004I01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004I01f, mRNA sequence
Length = 741
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 330 cggcccgcgccgaagggcaggagctcg 304
>gb|AV912967.1|AV912967 AV912967 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11c24 5', mRNA sequence
Length = 489
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 474 cggcccgcgccgaagggcaggagctcg 448
>gb|AV917230.1|AV917230 AV917230 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18a18 5', mRNA sequence
Length = 619
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 430 cggcccgcgccgaagggcaggagctcg 404
>gb|AV917240.1|AV917240 AV917240 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b11 5', mRNA sequence
Length = 586
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 232 cggcccgcgccgaagggcaggagctcg 206
>gb|AV917724.1|AV917724 AV917724 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11c24 3', mRNA sequence
Length = 578
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 351 cggcccgcgccgaagggcaggagctcg 377
>gb|AV917809.1|AV917809 AV917809 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11k05 3', mRNA sequence
Length = 630
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 329 cggcccgcgccgaagggcaggagctcg 355
>gb|AV918924.1|AV918924 AV918924 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22l15 3', mRNA sequence
Length = 566
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 373 cggcccgcgccgaagggcaggagctcg 399
>gb|AV919113.1|AV919113 AV919113 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4j07 3', mRNA sequence
Length = 646
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 328 cggcccgcgccgaagggcaggagctcg 354
>gb|AV919240.1|AV919240 AV919240 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5c10 3', mRNA sequence
Length = 669
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 365 cggcccgcgccgaagggcaggagctcg 391
>gb|AV919454.1|AV919454 AV919454 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b21 3', mRNA sequence
Length = 712
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 288 cggcccgcgccgaagggcaggagctcg 314
>gb|AV920535.1|AV920535 AV920535 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14g24 3', mRNA sequence
Length = 499
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 348 cggcccgcgccgaagggcaggagctcg 374
>gb|AV922397.1|AV922397 AV922397 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18a18 3', mRNA sequence
Length = 718
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 365 cggcccgcgccgaagggcaggagctcg 391
>gb|AV922407.1|AV922407 AV922407 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b11 3', mRNA sequence
Length = 560
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 329 cggcccgcgccgaagggcaggagctcg 355
>gb|AV922497.1|AV922497 AV922497 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18g21 3', mRNA sequence
Length = 670
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 366 cggcccgcgccgaagggcaggagctcg 392
>gb|BJ463386.1|BJ463386 BJ463386 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27g14 5', mRNA sequence
Length = 528
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 507 cggcccgcgccgaagggcaggagctcg 481
>gb|BJ464883.1|BJ464883 BJ464883 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36h03 5', mRNA sequence
Length = 582
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 430 cggcccgcgccgaagggcaggagctcg 404
>gb|BJ465805.1|BJ465805 BJ465805 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27g14 3', mRNA sequence
Length = 511
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 330 cggcccgcgccgaagggcaggagctcg 356
>gb|BJ466231.1|BJ466231 BJ466231 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31e07 3', mRNA sequence
Length = 580
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 329 cggcccgcgccgaagggcaggagctcg 355
>gb|BJ466813.1|BJ466813 BJ466813 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34b17 3', mRNA sequence
Length = 729
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 317 cggcccgcgccgaagggcaggagctcg 343
>gb|BJ466913.1|BJ466913 BJ466913 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35a04 3', mRNA sequence
Length = 719
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 366 cggcccgcgccgaagggcaggagctcg 392
>gb|BJ467028.1|BJ467028 BJ467028 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35k11 3', mRNA sequence
Length = 446
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 345 cggcccgcgccgaagggcaggagctcg 371
>gb|BQ467933.1|BQ467933 HR01G08r HR Hordeum vulgare subsp. vulgare cDNA clone HR01G08
5-PRIME, mRNA sequence
Length = 428
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 742 gggagcagcagcgtcgacg 760
|||||||||||||||||||
Sbjct: 74 gggagcagcagcgtcgacg 92
>gb|BQ471267.1|BQ471267 HV01P03T HV Hordeum vulgare subsp. vulgare cDNA clone HV01P03
5-PRIME, mRNA sequence
Length = 610
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 459 cggcccgcgccgaagggcaggagctcg 433
>gb|BQ471971.1|BQ471971 HV04A16r HV Hordeum vulgare subsp. vulgare cDNA clone HV04A16
5-PRIME, mRNA sequence
Length = 469
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 335 cggcccgcgccgaagggcaggagctcg 361
>gb|BQ664118.1|BQ664118 HV01P03w HV Hordeum vulgare subsp. vulgare cDNA clone HV01P03
3-PRIME, mRNA sequence
Length = 591
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 376 cggcccgcgccgaagggcaggagctcg 402
>gb|BM101180.2|BM101180 EBpi01_SQ003_C01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_C01 5', mRNA sequence
Length = 537
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 312 cggcccgcgccgaagggcaggagctcg 338
>gb|CA015964.1|CA015964 HV11L11u HV Hordeum vulgare subsp. vulgare cDNA clone HV11L11
3-PRIME, mRNA sequence
Length = 430
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 377 cggcccgcgccgaagggcaggagctcg 403
>gb|CA016358.1|CA016358 HV09D15u HV Hordeum vulgare subsp. vulgare cDNA clone HV09D15
3-PRIME, mRNA sequence
Length = 417
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 376 cggcccgcgccgaagggcaggagctcg 402
>gb|CA017757.1|CA017757 HV06C16r HV Hordeum vulgare subsp. vulgare cDNA clone HV06C16
5-PRIME, mRNA sequence
Length = 477
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 535 cggccggcgccgaacggcaggagctcg 561
||||| |||||||| ||||||||||||
Sbjct: 335 cggcccgcgccgaagggcaggagctcg 361
>gb|AY735915.1| Hordeum vulgare subsp. vulgare clone cLN15-43-37.1A.7 cytochrome
P450 (CYP P450) gene, partial cds
Length = 87
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 537 gccggcgccgaacggcaggagctcgaa 563
|||||||||||| ||||| ||||||||
Sbjct: 81 gccggcgccgaagggcagaagctcgaa 55
>gb|AY735916.1| Hordeum vulgare subsp. vulgare clone cLN15-42-37.1A.6 cytochrome
P450 (CYP P450) gene, partial cds
Length = 87
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 537 gccggcgccgaacggcaggagctcgaa 563
|||||||||||| ||||| ||||||||
Sbjct: 81 gccggcgccgaagggcagaagctcgaa 55
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,255
Number of Sequences: 312970
Number of extensions: 87255
Number of successful extensions: 25611
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25507
Number of HSP's gapped (non-prelim): 102
length of query: 767
length of database: 175,134,539
effective HSP length: 19
effective length of query: 748
effective length of database: 169,188,109
effective search space: 126552705532
effective search space used: 126552705532
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)