BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3670867.2.1
         (790 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA024243.1|CA024243  HZ48M07r HZ Hordeum vulgare subsp. v...   127   6e-028
gb|AJ461196.1|AJ461196  AJ461196 S00002 Hordeum vulgare subs...    80   1e-013
gb|AL503076.1|AL503076  AL503076 Hordeum vulgare Barke roots...    46   0.002
gb|BM372253.2|BM372253  EBro03_SQ004_H03_R root, 3 week, wat...    46   0.002
gb|BJ469140.1|BJ469140  BJ469140 K. Sato unpublished cDNA li...    42   0.027
gb|BJ470998.1|BJ470998  BJ470998 K. Sato unpublished cDNA li...    42   0.027

>gb|CA024243.1|CA024243 HZ48M07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48M07
           5-PRIME, mRNA sequence
          Length = 518

 Score =  127 bits (64), Expect = 6e-028
 Identities = 168/203 (82%)
 Strand = Plus / Minus

                                                                       
Query: 348 agctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacgg 407
           |||| |||| |||| ||| |||| |||||| |  || ||||| |||||||||||  ||||
Sbjct: 518 agcttccgatgtgcggctgttcgtggaggaagatggtggcgagcacggtggtgacgacgg 459

                                                                       
Query: 408 tgcagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgact 467
           ||||||| || ||||||||||| |||||||| || |||||||| |  |||||||||||||
Sbjct: 458 tgcagagggggttgaacatggccgagtagagaggccccctcaccgttatgcaccacgact 399

                                                                       
Query: 468 gcaggtagaacgtgacgccggacccgaacacgcccgagaagacgcagcaggagagctcga 527
           ||||||||||||| || || ||||| | | |||| | ||||| |||||    ||||||||
Sbjct: 398 gcaggtagaacgtcacccctgacccaaccgcgccggcgaagatgcagcccatgagctcga 339

                                  
Query: 528 agagcgagtggatcctccaggcg 550
           ||||||||| |||| ||||||||
Sbjct: 338 agagcgagttgatcttccaggcg 316



>gb|AJ461196.1|AJ461196 AJ461196 S00002 Hordeum vulgare subsp. vulgare cDNA clone
           S0000200024D06F1, mRNA sequence
          Length = 240

 Score = 79.8 bits (40), Expect = 1e-013
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                       
Query: 293 gctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcgcccagcaagctg 352
           ||||||||||||||||| | ||||||||||||||  ||||||| ||| |||| |||||| 
Sbjct: 108 gctttgccccacagcacgatgtacagccccgcgaccacggcgaacgcacccaacaagctt 49

                                                           
Query: 353 ccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtg 400
           |||| |||| ||| |||| |||||| |  || ||||| ||||||||||
Sbjct: 48  ccgatgtgcggctgttcgtggaggaagatggtggcgagcacggtggtg 1



>gb|AL503076.1|AL503076 AL503076 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
           cDNA clone HW09K03u 3', mRNA sequence
          Length = 601

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 284 gcgtcgcccgctttgccccacagcaccacgtacag 318
           |||||| | ||||||||||||||||| ||||||||
Sbjct: 186 gcgtcgtcagctttgccccacagcacaacgtacag 220



>gb|BM372253.2|BM372253 EBro03_SQ004_H03_R root, 3 week, waterlogged, cv Optic, EBro03
           Hordeum vulgare subsp. vulgare cDNA clone
           EBro03_SQ004_H03 5', mRNA sequence
          Length = 643

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 284 gcgtcgcccgctttgccccacagcaccacgtacag 318
           |||||| | ||||||||||||||||| ||||||||
Sbjct: 387 gcgtcgtcagctttgccccacagcacaacgtacag 353



>gb|BJ469140.1|BJ469140 BJ469140 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal13f18 5', mRNA sequence
          Length = 673

 Score = 42.1 bits (21), Expect = 0.027
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 368 tcgcggaggacggcggcggcg 388
           |||||||||||||||||||||
Sbjct: 43  tcgcggaggacggcggcggcg 23



>gb|BJ470998.1|BJ470998 BJ470998 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal30c15 5', mRNA sequence
          Length = 684

 Score = 42.1 bits (21), Expect = 0.027
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 368 tcgcggaggacggcggcggcg 388
           |||||||||||||||||||||
Sbjct: 49  tcgcggaggacggcggcggcg 29



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 135,641
Number of Sequences: 312970
Number of extensions: 135641
Number of successful extensions: 35644
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35637
Number of HSP's gapped (non-prelim): 6
length of query: 790
length of database: 175,134,539
effective HSP length: 19
effective length of query: 771
effective length of database: 169,188,109
effective search space: 130444032039
effective search space used: 130444032039
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)