BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665414.2.1
(3330 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ465518.1|BJ465518 BJ465518 K. Sato unpublished cDNA li... 603 e-170
gb|BF626879.2|BF626879 HVSMEb0001J09f Hordeum vulgare seedl... 381 e-103
gb|BU997959.1|BU997959 HI09I16r HI Hordeum vulgare subsp. v... 321 8e-086
gb|BU988158.1|BU988158 HF16N05r HF Hordeum vulgare subsp. v... 307 1e-081
gb|BE421430.1|BE421430 HWM009.C03 ITEC HWM Barley Leaf Libr... 293 2e-077
gb|AV926878.1|AV926878 AV926878 K. Sato unpublished cDNA li... 293 2e-077
gb|AV919193.1|AV919193 AV919193 K. Sato unpublished cDNA li... 137 3e-030
gb|AV914147.1|AV914147 AV914147 K. Sato unpublished cDNA li... 78 2e-012
gb|BJ467740.1|BJ467740 BJ467740 K. Sato unpublished cDNA li... 54 3e-005
gb|BJ468963.1|BJ468963 BJ468963 K. Sato unpublished cDNA li... 54 3e-005
gb|AV832759.1|AV832759 AV832759 K. Sato unpublished cDNA li... 52 1e-004
gb|BG414214.2|BG414214 HVSMEk0001E01f Hordeum vulgare testa... 48 0.002
gb|BG345002.1|BG345002 HVSMEg0018E04f Hordeum vulgare pre-a... 46 0.007
gb|CB859159.1|CB859159 HI09I16w HI Hordeum vulgare subsp. v... 44 0.030
gb|BE420969.1|BE420969 HWM004.D10 ITEC HWM Barley Leaf Libr... 42 0.12
gb|BE421668.1|BE421668 HWM012cF.03r ITEC HWM Barley Leaf Li... 42 0.12
gb|AL507823.1|AL507823 AL507823 Hordeum vulgare Barke devel... 42 0.12
gb|AL508265.1|AL508265 AL508265 Hordeum vulgare Barke devel... 42 0.12
gb|AV833392.1|AV833392 AV833392 K. Sato unpublished cDNA li... 42 0.12
gb|BF623758.2|BF623758 HVSMEa0005I23f Hordeum vulgare seedl... 42 0.12
gb|BF623766.2|BF623766 HVSMEa0005K15f Hordeum vulgare seedl... 42 0.12
gb|BF630135.2|BF630135 HVSMEb0008A24f Hordeum vulgare seedl... 42 0.12
gb|BF629804.2|BF629804 HVSMEb0013O09f Hordeum vulgare seedl... 42 0.12
gb|BG300952.1|BG300952 HVSMEb0019B01f Hordeum vulgare seedl... 42 0.12
gb|BF254507.2|BF254507 HVSMEf0004D12f Hordeum vulgare seedl... 42 0.12
gb|AW983377.2|AW983377 HVSMEg0010G20f Hordeum vulgare pre-a... 42 0.12
gb|BE060838.2|BE060838 HVSMEg0013J01f Hordeum vulgare pre-a... 42 0.12
gb|BE603279.2|BE603279 HVSMEh0102P06f Hordeum vulgare 5-45 ... 42 0.12
gb|BI952661.1|BI952661 HVSMEm0007E22f Hordeum vulgare green... 42 0.12
gb|BI955919.1|BI955919 HVSMEm0025B06f Hordeum vulgare green... 42 0.12
gb|BE216074.1|BE216074 HV_CEb0009F07f Hordeum vulgare seedl... 42 0.12
gb|BF267345.2|BF267345 HV_CEa0017K09f Hordeum vulgare seedl... 42 0.12
gb|BE559108.2|BE559108 HV_CEb0022O04f Hordeum vulgare seedl... 42 0.12
gb|BG417705.1|BG417705 HVSMEk0019D04f Hordeum vulgare testa... 42 0.12
gb|BE231123.2|BE231123 HVSMEg0016N19f Hordeum vulgare pre-a... 42 0.12
gb|BG417241.2|BG417241 HVSMEk0016P06f Hordeum vulgare testa... 42 0.12
gb|AV913472.1|AV913472 AV913472 K. Sato unpublished cDNA li... 42 0.12
gb|AV915026.1|AV915026 AV915026 K. Sato unpublished cDNA li... 42 0.12
gb|AV915539.1|AV915539 AV915539 K. Sato unpublished cDNA li... 42 0.12
gb|AV922952.1|AV922952 AV922952 K. Sato unpublished cDNA li... 42 0.12
gb|AV925890.1|AV925890 AV925890 K. Sato unpublished cDNA li... 42 0.12
gb|AV926511.1|AV926511 AV926511 K. Sato unpublished cDNA li... 42 0.12
gb|AV933481.1|AV933481 AV933481 K. Sato unpublished cDNA li... 42 0.12
gb|AV933482.1|AV933482 AV933482 K. Sato unpublished cDNA li... 42 0.12
gb|BM816633.1|BM816633 HC111F10_T3.ab1 HC Hordeum vulgare s... 42 0.12
gb|AJ460714.1|AJ460714 AJ460714 S00002 Hordeum vulgare subs... 42 0.12
gb|BQ458408.1|BQ458408 HA05F02r HA Hordeum vulgare subsp. v... 42 0.12
gb|BQ462545.1|BQ462545 HI01D19T HI Hordeum vulgare subsp. v... 42 0.12
gb|BQ462791.1|BQ462791 HI02A08r HI Hordeum vulgare subsp. v... 42 0.12
gb|BQ463250.1|BQ463250 HI04I09r HI Hordeum vulgare subsp. v... 42 0.12
gb|BQ467882.1|BQ467882 HR01D14r HR Hordeum vulgare subsp. v... 42 0.12
gb|BQ467997.1|BQ467997 HR01J17r HR Hordeum vulgare subsp. v... 42 0.12
gb|BM368211.2|BM368211 EBed01_SQ002_H20_R endosperm, 6 DPA,... 42 0.12
gb|BM097559.2|BM097559 EBem04_SQ002_A16_R embryo, 12 DPA, n... 42 0.12
gb|BM097736.2|BM097736 EBem04_SQ002_I21_R embryo, 12 DPA, n... 42 0.12
gb|BM378034.2|BM378034 EBem04_SQ004_P14_R embryo, 12 DPA, n... 42 0.12
gb|BM098400.2|BM098400 EBem08_SQ002_N20_R embryo, 40 DPA, n... 42 0.12
gb|BM099994.2|BM099994 EBes01_SQ004_N18_R embryo sac, 4-6 D... 42 0.12
gb|BM100618.2|BM100618 EBma01_SQ005_L24_R maternal, 4 DPA, ... 42 0.12
gb|BM373014.2|BM373014 EBma04_SQ002_L24_R maternal, 10 DPA,... 42 0.12
gb|BM371687.2|BM371687 EBma08_SQ003_J16_R maternal, 28 DPA,... 42 0.12
gb|BM371900.2|BM371900 EBma08_SQ004_G02_R maternal, 28 DPA,... 42 0.12
gb|BM374340.2|BM374340 EBpi03_SQ003_F16_R pistil, 4 DPA, no... 42 0.12
gb|BM097310.2|BM097310 EBro01_SQ004_L19_R root, 3 week, hyd... 42 0.12
gb|BM440934.2|BM440934 EBro08_SQ004_P05_R root, 3 week, dro... 42 0.12
gb|BQ756051.1|BQ756051 EBem05_SQ001_H09_R embryo, 14 DPA, n... 42 0.12
gb|BQ759037.1|BQ759037 EBma07_SQ003_G18_R maternal, 21 DPA,... 42 0.12
gb|BQ759139.1|BQ759139 EBma07_SQ003_M21_R maternal, 21 DPA,... 42 0.12
gb|BQ760070.1|BQ760070 EBpi07_SQ003_I06_R pistil, 12 DPA, n... 42 0.12
gb|BQ760981.1|BQ760981 EBro03_SQ004_A10_R root, 3 week, wat... 42 0.12
gb|BQ761240.1|BQ761240 EBro04_SQ004_N01_R root, 3 week, sal... 42 0.12
gb|BQ761695.1|BQ761695 EBem10_SQ001_G14_R embryo, 2 Day ger... 42 0.12
gb|BQ764689.1|BQ764689 EBca01_SQ004_I17_R carpel, pre-anthe... 42 0.12
gb|BQ765183.1|BQ765183 EBro03_SQ006_M09_R root, 3 week, wat... 42 0.12
gb|BQ765755.1|BQ765755 EBro03_SQ008_G04_R root, 3 week, wat... 42 0.12
gb|BQ765870.1|BQ765870 EBro03_SQ008_L08_R root, 3 week, wat... 42 0.12
gb|BQ767440.1|BQ767440 EBro08_SQ008_L24_R root, 3 week, dro... 42 0.12
gb|BQ768075.1|BQ768075 EBro08_SQ010_J17_R root, 3 week, dro... 42 0.12
gb|BU967504.1|BU967504 HB04H19r BC Hordeum vulgare subsp. v... 42 0.12
gb|BU972882.1|BU972882 HB23A11r BC Hordeum vulgare subsp. v... 42 0.12
gb|BU979395.1|BU979395 HA16A08r HA Hordeum vulgare subsp. v... 42 0.12
gb|BU980947.1|BU980947 HA22C19r HA Hordeum vulgare subsp. v... 42 0.12
gb|BU981698.1|BU981698 HA24F23r HA Hordeum vulgare subsp. v... 42 0.12
gb|BU983769.1|BU983769 HA30P23r HA Hordeum vulgare subsp. v... 42 0.12
gb|BU984073.1|BU984073 HA31O15r HA Hordeum vulgare subsp. v... 42 0.12
gb|BU987123.1|BU987123 HF13N21r HF Hordeum vulgare subsp. v... 42 0.12
gb|CA007312.1|CA007312 HU07I04r HU Hordeum vulgare subsp. v... 42 0.12
gb|CA007385.1|CA007385 HU07M11r HU Hordeum vulgare subsp. v... 42 0.12
gb|CA015363.1|CA015363 HT14B06r HT Hordeum vulgare subsp. v... 42 0.12
gb|CA017918.1|CA017918 HV06M12r HV Hordeum vulgare subsp. v... 42 0.12
gb|CA020519.1|CA020519 HZ36I22r HZ Hordeum vulgare subsp. v... 42 0.12
gb|CA020743.1|CA020743 HZ37H18r HZ Hordeum vulgare subsp. v... 42 0.12
gb|CA020754.1|CA020754 HZ37J03r HZ Hordeum vulgare subsp. v... 42 0.12
gb|CA021839.1|CA021839 HZ41E12r HZ Hordeum vulgare subsp. v... 42 0.12
gb|CA023512.1|CA023512 HZ46H15r HZ Hordeum vulgare subsp. v... 42 0.12
gb|CA024745.1|CA024745 HZ50C23r HZ Hordeum vulgare subsp. v... 42 0.12
gb|CA024759.1|CA024759 HZ50D15r HZ Hordeum vulgare subsp. v... 42 0.12
gb|CA027236.1|CA027236 HZ58E16r HZ Hordeum vulgare subsp. v... 42 0.12
gb|CA029100.1|CA029100 HZ64D06r HZ Hordeum vulgare subsp. v... 42 0.12
gb|BJ544669.1|BJ544669 BJ544669 K. Sato unpublished cDNA li... 42 0.12
gb|BJ547051.1|BJ547051 BJ547051 K. Sato unpublished cDNA li... 42 0.12
gb|BJ547191.1|BJ547191 BJ547191 K. Sato unpublished cDNA li... 42 0.12
gb|BJ547255.1|BJ547255 BJ547255 K. Sato unpublished cDNA li... 42 0.12
gb|BJ547281.1|BJ547281 BJ547281 K. Sato unpublished cDNA li... 42 0.12
gb|BJ547431.1|BJ547431 BJ547431 K. Sato unpublished cDNA li... 42 0.12
gb|BJ547629.1|BJ547629 BJ547629 K. Sato unpublished cDNA li... 42 0.12
gb|BJ547695.1|BJ547695 BJ547695 K. Sato unpublished cDNA li... 42 0.12
gb|BJ547827.1|BJ547827 BJ547827 K. Sato unpublished cDNA li... 42 0.12
gb|BJ549153.1|BJ549153 BJ549153 K. Sato unpublished cDNA li... 42 0.12
gb|CB882543.1|CB882543 HL02C17w HL Hordeum vulgare subsp. v... 42 0.12
gb|CB883400.1|CB883400 HQ02C06w HQ Hordeum vulgare subsp. v... 42 0.12
gb|CV055730.1|CV055730 BNEL122h1 Barley EST endosperm libra... 42 0.12
gb|CV059370.1|CV059370 BNEL47d2 Barley EST endosperm librar... 42 0.12
gb|CK124983.1|CK124983 BES1824111A2f06 BES1824 Hordeum vulg... 42 0.12
gb|CK125919.1|CK125919 BES1824111B1g11 BES1824 Hordeum vulg... 42 0.12
gb|BF253457.2|BF253457 HVSMEf0001H15f Hordeum vulgare seedl... 40 0.46
gb|BI949977.1|BI949977 HVSMEl0017G20f Hordeum vulgare spike... 40 0.46
gb|BF265877.1|BF265877 HV_CEa0013J04f Hordeum vulgare seedl... 40 0.46
gb|BM100661.2|BM100661 EBma01_SQ005_N21_R maternal, 4 DPA, ... 40 0.46
gb|BQ754234.1|BQ754234 EBca01_SQ003_E11_R carpel, pre-anthe... 40 0.46
gb|BQ765085.1|BQ765085 EBca01_SQ005_B23_R carpel, pre-anthe... 40 0.46
gb|BQ768312.1|BQ768312 EBro08_SQ011_I10_R root, 3 week, dro... 40 0.46
gb|BU985136.1|BU985136 HF06D22r HF Hordeum vulgare subsp. v... 40 0.46
gb|CA015594.1|CA015594 HT14M19r HT Hordeum vulgare subsp. v... 40 0.46
gb|CB880779.1|CB880779 HM07M20w HM Hordeum vulgare subsp. v... 40 0.46
gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, co... 40 0.46
>gb|BJ465518.1|BJ465518 BJ465518 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29j23 5', mRNA sequence
Length = 669
Score = 603 bits (304), Expect = e-170
Identities = 556/640 (86%)
Strand = Plus / Plus
Query: 1973 ttaagaaaactgcagacaatattgatgaggctgcaaaggagcttccggatgctaatttga 2032
|||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||
Sbjct: 24 ttaagaaaactgcagaaaatattgatgaggctgcaaaagaacttccagatgctaatttga 83
Query: 2033 gacctgaggatctatgggctaatcactcaaaaccagtcttgccaaagccacatatgaagg 2092
| || ||||| ||||||| || ||||||||| ||| ||||||||||||||||||||||
Sbjct: 84 ggccggaggacttatgggccaaccactcaaaagtagttttgccaaagccacatatgaagg 143
Query: 2093 atactgcatcgtggagagccatccaaaaggttcttgagaacggtgaaagcattgatttga 2152
|| ||||||| |||||||| |||||||| |||| |||| || |||| ||||||| |||
Sbjct: 144 attctgcatcatggagagctatccaaaaagttcgtgagggtggagaaaacattgatctga 203
Query: 2153 aacatttcagaccagtaaggcctttaggatctggtgatactggcagtgtccacttggtgg 2212
|||||||||| || |||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 204 aacatttcaggcctgtaaaacctttggggtctggtgacactggaagtgtgcacttggtgg 263
Query: 2213 agttgcttggcacaggtgaatactttgccatgaaagctatggataaaagtgtcatgctta 2272
|| |||| |||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 264 agctgctaaagacaggtgaatactttgccatgaaagcgatggataaaaatgtcatgctta 323
Query: 2273 accgaaacaaggtccatagagctaccgctgaacgacaaatccttgatatgttggaccacc 2332
|||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 324 accgcaataaggtccatagggctactgctgaacgacaaatccttgatatgttggaccatc 383
Query: 2333 cattccttccgacattgtatgcatcatttcagacaaagacacatatatgtcttattgttg 2392
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 384 cattccttccaacattgtatgcatcatttcagacgaagacacatatatgtcttattacag 443
Query: 2393 actattgtgctggtggggaactctttatgctccttgataggcaacctatgaaggttctga 2452
| || | |||||||||| |||||| ||||||| |||||||||||| ||||||| |
Sbjct: 444 attactaccctggtggggagctctttctgctcctagataggcaacctcagaaggttttac 503
Query: 2453 aggaggatgcggtcaggttctatgctgcagaagtggtcacagcacttgaatacctacatt 2512
||| ||||| |||||||||||||| || ||||| |||| |||||||||||| | ||||
Sbjct: 504 gggaagatgcagtcaggttctatgcagctgaagttgtcattgcacttgaatacttgcatt 563
Query: 2513 gccaaggtataatctacagagacttaaagccagagaacattttacttcatagagatgggc 2572
| ||||||||||||||| |||| || ||||||||||| || |||||||||||||| ||||
Sbjct: 564 gtcaaggtataatctaccgagatttgaagccagagaatatcttacttcatagagacgggc 623
Query: 2573 acatttcattgacagactttgatttgtcttgcttgacatc 2612
|||| || ||||||||||||||||||||||| |||||||
Sbjct: 624 acatatccctgacagactttgatttgtcttgcctgacatc 663
>gb|BF626879.2|BF626879 HVSMEb0001J09f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0001J09f, mRNA sequence
Length = 780
Score = 381 bits (192), Expect = e-103
Identities = 446/530 (84%), Gaps = 3/530 (0%)
Strand = Plus / Plus
Query: 2515 caaggtataatctacagagacttaaagccagagaacattttacttcatagagatgggcac 2574
||||||||||||||| |||| || ||||||||||| || |||||||||||||| ||||||
Sbjct: 4 caaggtataatctaccgagatttgaagccagagaatatcttacttcatagagacgggcac 63
Query: 2575 atttcattgacagactttgatttgtcttgcttgacatcctgccgaccacaagtgtttctt 2634
|| || ||||||||||||||||||||||| ||||||| ||| |||| || || ||||||
Sbjct: 64 atatccctgacagactttgatttgtcttgcctgacatcttgcagaccgcaggtctttctt 123
Query: 2635 ccacacgatattgataagaagaaaaagaggaggaagagcaggagtaatcccatatttttt 2694
||| | || | ||| ||||||| |||||||| ||||||||| ||||||||||||
Sbjct: 124 ccagaagaa---gctaataagaaaagtaggaggaaaagcaggagttcacccatatttttt 180
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|| ||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct: 181 gcggaaccgatgcgagcatccaattcatttgttggtacagaagagtacattgcacctgag 240
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 241 attattaccggagctggccatacaagtgctgttgattggtgggcgctagggattcttctg 300
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagacaaaggacatttgct 2874
||||| ||| | |||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct: 301 tatgaaatgctgtatggttacacacccttcagaggtaaaaccaggcaaaggacatttgcc 360
Query: 2875 aatattctgcacaaggatatcagatttcctgcgagcatacaggtgagcctggcggcaagg 2934
|| || || |||||||| |||||||| || || || ||| ||||||||| | || |||
Sbjct: 361 aacatcctacacaaggacatcagattccccgcaagtatatcggtgagcctcccagctagg 420
Query: 2935 cagctgatataccggttgctacaccgagaccctgcaaataggctaggttcctatgagggc 2994
|||||||| ||| ||||||| ||| | || || || ||||| | || || ||||||||
Sbjct: 421 cagctgatctacaggttgctgcacagggatcccgcgaatagaatgggatcgtatgagggg 480
Query: 2995 gctatggagatcaaacaacaccccttctttcgtggcataaactgggctct 3044
| | ||||| ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 481 tcgaacgagataaaacaacacccgttcttccgcggcatcaactgggctct 530
>gb|BU997959.1|BU997959 HI09I16r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I16
5-PRIME, mRNA sequence
Length = 665
Score = 321 bits (162), Expect = 8e-086
Identities = 398/476 (83%), Gaps = 3/476 (0%)
Strand = Plus / Plus
Query: 2569 gggcacatttcattgacagactttgatttgtcttgcttgacatcctgccgaccacaagtg 2628
|||||||| || ||||||||||||||||||||||| ||||||| ||| |||| || ||
Sbjct: 14 gggcacatatccctgacagactttgatttgtcttgcctgacatcttgcagaccgcaggtc 73
Query: 2629 tttcttccacacgatattgataagaagaaaaagaggaggaagagcaggagtaatcccata 2688
||||||||| | || | ||| ||||||| |||||||| ||||||||| ||||||
Sbjct: 74 tttcttccagaagaa---gctaataagaaaagtaggaggaaaagcaggagttcacccata 130
Query: 2689 ttttttgctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgca 2748
|||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 131 ttttttgcggaaccgatgcgagcatccaattcatttgttggtacagaagagtacattgca 190
Query: 2749 ccggagattattaccggagctggccatacgagtgctgtagattggtgggcgctaggaatt 2808
|| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct: 191 cctgagattattaccggagctggccatacaagtgctgttgattggtgggcgctagggatt 250
Query: 2809 cttctatatgagatgttatatggttatacacccttcagagggaaaacaagacaaaggaca 2868
||||| ||||| ||| | |||||||| |||||||||||||| ||||| || |||||||||
Sbjct: 251 cttctgtatgaaatgctgtatggttacacacccttcagaggtaaaaccaggcaaaggaca 310
Query: 2869 tttgctaatattctgcacaaggatatcagatttcctgcgagcatacaggtgagcctggcg 2928
||||| || || || |||||||| |||||||| || || || ||| ||||||||| |
Sbjct: 311 tttgccaacatcctacacaaggacatcagattccccgcaagtatatcggtgagcctccca 370
Query: 2929 gcaaggcagctgatataccggttgctacaccgagaccctgcaaataggctaggttcctat 2988
|| ||||||||||| ||| ||||||| ||| | || || || ||||| | || || |||
Sbjct: 371 gctaggcagctgatctacaggttgctgcacagggatcccgcgaatagaatgggatcgtat 430
Query: 2989 gagggcgctatggagatcaaacaacaccccttctttcgtggcataaactgggctct 3044
||||| | | ||||| ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 431 gaggggtcgaacgagataaaacaacacccgttcttccgcggcatcaactgggctct 486
>gb|BU988158.1|BU988158 HF16N05r HF Hordeum vulgare subsp. vulgare cDNA clone HF16N05
5-PRIME, mRNA sequence
Length = 649
Score = 307 bits (155), Expect = 1e-081
Identities = 266/303 (87%)
Strand = Plus / Plus
Query: 995 tcctcaactacaagaaggatggcacaccattctggaacctcctaaccgttgcccccataa 1054
||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||| |
Sbjct: 24 tcctcaactacaagaaggatggcacggcattctggaacctgctgaccattgcccccatca 83
Query: 1055 aggatgaggatggcagggtcctcaagttcattgggatgcaagtggaagtaagtaagtaca 1114
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 84 aggatgaggatggcagggtcctcaagttcatagggatgcaagtggaagtgagtaaataca 143
Query: 1115 cggaaggtaacaaagatactgctcttcgtccaaatggattgccagagtcactcatcaaat 1174
| ||||| ||||| || |||| | |||||||||||||| |||||||||||||||||||||
Sbjct: 144 ctgaagggaacaaggacactgttgttcgtccaaatggactgccagagtcactcatcaaat 203
Query: 1175 atgatgcaaggcagaaggatcatgctcgtagctcagtctcggagctcctacttgccctga 1234
||||||| |||||||||||||| || |||||||| || || ||||| || | || || |
Sbjct: 204 atgatgctaggcagaaggatcaggcccgtagctcggtgtctgagcttctgttggctctca 263
Query: 1235 aggatccacggtcattgtcagaatcaagaaacaataccttaaaaaggaaatcacaggaat 1294
|| | || |||||||||||||||||||| || | ||||| ||||| |||||||||||||
Sbjct: 264 agaacccgcggtcattgtcagaatcaagtaatagcaccttcaaaagaaaatcacaggaat 323
Query: 1295 cag 1297
|||
Sbjct: 324 cag 326
Score = 123 bits (62), Expect = 4e-026
Identities = 136/160 (85%), Gaps = 3/160 (1%)
Strand = Plus / Plus
Query: 1454 ttggtatgggacatgggaatgtagagaagaacattctaaaaccaaggga---agatcccc 1510
|||||||||| ||||| |||||||| |||||||| || |||||||| || |||||| |
Sbjct: 489 ttggtatgggccatggaaatgtagaaaagaacatgctgaaaccaagagatgaagatccgc 548
Query: 1511 tacttgatagcgatgatgagagaccagatagcttcgatgacgatttcaggaagaaagaaa 1570
||||||| || |||||||| ||||| || ||||| |||||||| | |||| ||||||||
Sbjct: 549 tacttgacagtgatgatgaaagacctgagagctttgatgacgagctaaggaggaaagaaa 608
Query: 1571 tgagaaagggcatagatttggctaccacacttgaacgtat 1610
|||||| ||| ||||| |||||||| ||||||||||||||
Sbjct: 609 tgagaaggggtatagacttggctactacacttgaacgtat 648
>gb|BE421430.1|BE421430 HWM009.C03 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.C03, mRNA sequence
Length = 832
Score = 293 bits (148), Expect = 2e-077
Identities = 331/392 (84%)
Strand = Plus / Plus
Query: 2653 aagaaaaagaggaggaagagcaggagtaatcccatattttttgctgaaccaatgcgagca 2712
||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 140 aagaaaagtaggaggaaaagcaggagttcacccatattttttgcggaaccgatgcgagca 199
Query: 2713 tcaaattcttttgttggtacagaggagtacattgcaccggagattattaccggagctggc 2772
|| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 200 tccaattcatttgttggtacagaagagtacattgcacctgagattattaccggagctggc 259
Query: 2773 catacgagtgctgtagattggtgggcgctaggaattcttctatatgagatgttatatggt 2832
||||| |||||||| ||||||||||||||||| |||||||| ||||| ||| | ||||||
Sbjct: 260 catacaagtgctgttgattggtgggcgctagggattcttctgtatgaaatgctgtatggt 319
Query: 2833 tatacacccttcagagggaaaacaagacaaaggacatttgctaatattctgcacaaggat 2892
|| |||||||||||||| ||||| || |||||||||||||| || || || ||||||||
Sbjct: 320 tacacacccttcagaggtaaaaccaggcaaaggacatttgccaacatcctacacaaggac 379
Query: 2893 atcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgatataccggttg 2952
|||||||| || || || ||| ||||||||| | || ||||||||||| ||| |||||
Sbjct: 380 atcagattccccgcaagtatatcggtgagcctcccagctaggcagctgatctacaggttg 439
Query: 2953 ctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggagatcaaacaa 3012
|| ||| | || || || ||||| | || || |||||||| | | ||||| ||||||
Sbjct: 440 ctgcacagggatcccgcgaatagaatgggatcgtatgaggggtcgaacgagataaaacaa 499
Query: 3013 caccccttctttcgtggcataaactgggctct 3044
||||| ||||| || ||||| |||||||||||
Sbjct: 500 cacccgttcttccgcggcatcaactgggctct 531
>gb|AV926878.1|AV926878 AV926878 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd24k23 5', mRNA sequence
Length = 703
Score = 293 bits (148), Expect = 2e-077
Identities = 331/392 (84%)
Strand = Plus / Plus
Query: 2653 aagaaaaagaggaggaagagcaggagtaatcccatattttttgctgaaccaatgcgagca 2712
||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 79 aagaaaagtaggaggaaaagcaggagttcacccatattttttgcggaaccgatgcgagca 138
Query: 2713 tcaaattcttttgttggtacagaggagtacattgcaccggagattattaccggagctggc 2772
|| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 139 tccaattcatttgttggtacagaagagtacattgcacctgagattattaccggagctggc 198
Query: 2773 catacgagtgctgtagattggtgggcgctaggaattcttctatatgagatgttatatggt 2832
||||| |||||||| ||||||||||||||||| |||||||| ||||| ||| | ||||||
Sbjct: 199 catacaagtgctgttgattggtgggcgctagggattcttctgtatgaaatgctgtatggt 258
Query: 2833 tatacacccttcagagggaaaacaagacaaaggacatttgctaatattctgcacaaggat 2892
|| |||||||||||||| ||||| || |||||||||||||| || || || ||||||||
Sbjct: 259 tacacacccttcagaggtaaaaccaggcaaaggacatttgccaacatcctacacaaggac 318
Query: 2893 atcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgatataccggttg 2952
|||||||| || || || ||| ||||||||| | || ||||||||||| ||| |||||
Sbjct: 319 atcagattccccgcaagtatatcggtgagcctcccagctaggcagctgatctacaggttg 378
Query: 2953 ctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggagatcaaacaa 3012
|| ||| | || || || ||||| | || || |||||||| | | ||||| ||||||
Sbjct: 379 ctgcacagggatcccgcgaatagaatgggatcgtatgaggggtcgaacgagataaaacaa 438
Query: 3013 caccccttctttcgtggcataaactgggctct 3044
||||| ||||| || ||||| |||||||||||
Sbjct: 439 cacccgttcttccgcggcatcaactgggctct 470
>gb|AV919193.1|AV919193 AV919193 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o22 3', mRNA sequence
Length = 586
Score = 137 bits (69), Expect = 3e-030
Identities = 210/257 (81%)
Strand = Plus / Minus
Query: 2788 gattggtgggcgctaggaattcttctatatgagatgttatatggttatacacccttcaga 2847
||||||||||||||||| |||||||| ||||| ||| | |||||||| ||||||||||||
Sbjct: 584 gattggtgggcgctagggattcttctgtatgaaatgctgtatggttacacacccttcaga 525
Query: 2848 gggaaaacaagacaaaggacatttgctaatattctgcacaaggatatcagatttcctgcg 2907
|| ||||| || |||||||||||||| || || || |||||||| |||||||| || ||
Sbjct: 524 ggtaaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgca 465
Query: 2908 agcatacaggtgagcctggcggcaaggcagctgatataccggttgctacaccgagaccct 2967
|| ||| ||||||||| | || ||||||||||| ||| ||||||| ||| | || ||
Sbjct: 464 agtatatcggtgagcctcccagctaggcagctgatctacaggttgctgcacagggatccc 405
Query: 2968 gcaaataggctaggttcctatgagggcgctatggagatcaaacaacaccccttctttcgt 3027
|| ||||| | || || |||||||| | | ||||| ||||||||||| ||||| ||
Sbjct: 404 gcgaatagaatgggatcgtatgaggggtcgaacgagataaaacaacacccgttcttccgc 345
Query: 3028 ggcataaactgggctct 3044
||||| |||||||||||
Sbjct: 344 ggcatcaactgggctct 328
>gb|AV914147.1|AV914147 AV914147 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o22 5', mRNA sequence
Length = 557
Score = 77.8 bits (39), Expect = 2e-012
Identities = 172/215 (80%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 2831 gttatacacccttcag-agggaaaacaagacaaaggacatttgctaatattctgcacaag 2889
|||| ||||||||||| ||| ||||| || |||||||||||||| || || || ||||||
Sbjct: 1 gttacacacccttcagcaggtaaaaccaggcaaaggacatttgccaacatcctacacaag 60
Query: 2890 gatatcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgatataccgg 2949
|| |||||||| || || || ||| ||||||||| | || ||||||||||| ||| ||
Sbjct: 61 gacatcagattccccgcaagtatatcggtgagcctcccagctaggcagctgatctacagg 120
Query: 2950 ttgctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggagatcaaa 3009
||||| ||| | || || || ||||| | || || |||||||| | | ||||| |||
Sbjct: 121 ttgctgcacagggatcccgcgaatagaatgggatcgtatgaggggtcgaacgagataaaa 180
Query: 3010 caacaccccttctttcgtggcataaactgggctct 3044
|||||||| ||||| || ||||| |||||||||||
Sbjct: 181 caacacccgttcttccgcggcatcaactgggctct 215
>gb|BJ467740.1|BJ467740 BJ467740 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29j23 3', mRNA sequence
Length = 507
Score = 54.0 bits (27), Expect = 3e-005
Identities = 168/218 (77%)
Strand = Plus / Minus
Query: 2827 tatggttatacacccttcagagggaaaacaagacaaaggacatttgctaatattctgcac 2886
|||||||| | ||||||| ||| ||| | || |||| || ||| | || || || |||
Sbjct: 507 tatggttanncncccttcanaggtaaanccagnnaaagaacntttnccaacatcctacac 448
Query: 2887 aaggatatcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgatatac 2946
||||| |||||||| || || || ||| ||||||||| | || ||||||||||| |||
Sbjct: 447 aaggacatcagattccccgcaagtatatcggtgagcctcccagctaggcagctgatctac 388
Query: 2947 cggttgctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggagatc 3006
||||||| ||| | || || || ||||| | || || |||||||| | | |||||
Sbjct: 387 aggttgctgcacagggatcccgcgaatagaatgggatcgtatgaggggtcgaacgagata 328
Query: 3007 aaacaacaccccttctttcgtggcataaactgggctct 3044
||||||||||| ||||| || ||||| |||||||||||
Sbjct: 327 aaacaacacccgttcttccgcggcatcaactgggctct 290
>gb|BJ468963.1|BJ468963 BJ468963 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12d11 5', mRNA sequence
Length = 629
Score = 54.0 bits (27), Expect = 3e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 1831 aagagcggtaagaaattctggaacctctttcacttgcagcctatgcgtgatcagaaggg 1889
|||||||| ||||| ||||||||| | |||||| ||||||||||| | || ||||||||
Sbjct: 107 aagagcgggaagaagttctggaacttgtttcacctgcagcctatgtgggaccagaaggg 165
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 2149 ttgaaacatttcagaccagtaaggcctttaggatctggtgatactggcagtgtccacttg 2208
|||||||| |||| ||||||| |||| |||| | ||| || ||||||||||| ||||||
Sbjct: 446 ttgaaacacttcaagccagtaaagcctctagggtgtggggacactggcagtgtacacttg 505
Query: 2209 gtggagttgc 2218
|| |||||||
Sbjct: 506 gttgagttgc 515
>gb|AV832759.1|AV832759 AV832759 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal1k18, mRNA sequence
Length = 571
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 2149 ttgaaacatttcagaccagtaaggcctttaggatctggtgatactggcagtgtccacttg 2208
|||||||| |||| ||||||| |||| |||| | ||| || ||||||||||| ||||||
Sbjct: 394 ttgaaacacttcaagccagtaaagcctctagggtgtggggacactggcagtgtacacttg 453
Query: 2209 gtggagttgc 2218
|| |||||||
Sbjct: 454 gttgagttgc 463
Score = 44.1 bits (22), Expect = 0.030
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1834 agcggtaagaaattctggaacctctttcacttgcagcctatg 1875
||||| ||||| ||||||||| | |||||| |||||||||||
Sbjct: 57 agcgggaagaagttctggaacttgtttcacctgcagcctatg 98
>gb|BG414214.2|BG414214 HVSMEk0001E01f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0001E01f, mRNA sequence
Length = 525
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 3001 gagatcaaacaacaccccttctttcgtggcataaactgggctct 3044
||||| ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 114 gagataaaacaacacccgttcttccgcggcatcaactgggctct 157
>gb|BG345002.1|BG345002 HVSMEg0018E04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018E04f, mRNA sequence
Length = 881
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||| |||||||||||||||||||||
Sbjct: 51 aggaggaggaggagcagcagcagcagc 25
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 300 aggaggagaaggaggagcagcagcagcag 328
|||||||| ||||| ||||||||||||||
Sbjct: 51 aggaggaggaggagcagcagcagcagcag 23
>gb|CB859159.1|CB859159 HI09I16w HI Hordeum vulgare subsp. vulgare cDNA clone HI09I16
3-PRIME, mRNA sequence
Length = 520
Score = 44.1 bits (22), Expect = 0.030
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 3001 gagatcaaacaacaccccttctttcgtggcataaactgggct 3042
||||| ||||||||||| ||||| || ||||| |||||||||
Sbjct: 465 gagataaaacaacacccgttcttccgcggcatcaactgggct 424
>gb|BE420969.1|BE420969 HWM004.D10 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.D10, mRNA sequence
Length = 1161
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 224 aggaggaggagaaggaggagc 204
>gb|BE421668.1|BE421668 HWM012cF.03r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM012cF.03, mRNA sequence
Length = 1351
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 193 aggaggaggagaaggaggagc 173
>gb|AL507823.1|AL507823 AL507823 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06P06V 5',
mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 54 aggaggaggagaaggaggagc 34
>gb|AL508265.1|AL508265 AL508265 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08E05V 5',
mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 71 aggaggaggagaaggaggagc 51
>gb|AV833392.1|AV833392 AV833392 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags7o21, mRNA sequence
Length = 583
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagc 329
|||||||||||||||||||||
Sbjct: 55 aggaggagcagcagcagcagc 75
>gb|BF623758.2|BF623758 HVSMEa0005I23f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0005I23f, mRNA sequence
Length = 502
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 62 aggaggaggagaaggaggagc 42
>gb|BF623766.2|BF623766 HVSMEa0005K15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0005K15f, mRNA sequence
Length = 495
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 62 aggaggaggagaaggaggagc 42
>gb|BF630135.2|BF630135 HVSMEb0008A24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008A24f, mRNA sequence
Length = 496
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 59 aggaggaggagaaggaggagc 39
>gb|BF629804.2|BF629804 HVSMEb0013O09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013O09f, mRNA sequence
Length = 775
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 62 aggaggaggagaaggaggagc 42
>gb|BG300952.1|BG300952 HVSMEb0019B01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019B01f, mRNA sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 56 aggaggaggagaaggaggagc 36
>gb|BF254507.2|BF254507 HVSMEf0004D12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004D12f, mRNA sequence
Length = 832
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 53 aggaggaggagaaggaggagc 33
>gb|AW983377.2|AW983377 HVSMEg0010G20f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010G20f, mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 59 aggaggaggagaaggaggagc 39
>gb|BE060838.2|BE060838 HVSMEg0013J01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013J01f, mRNA sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagc 329
|||||||||||||||||||||
Sbjct: 21 aggaggagcagcagcagcagc 41
>gb|BE603279.2|BE603279 HVSMEh0102P06f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102P06f, mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 69 aggaggaggagaaggaggagc 49
>gb|BI952661.1|BI952661 HVSMEm0007E22f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007E22f, mRNA sequence
Length = 421
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 73 aggaggaggagaaggaggagc 53
>gb|BI955919.1|BI955919 HVSMEm0025B06f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025B06f, mRNA sequence
Length = 681
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 69 aggaggaggagaaggaggagc 49
>gb|BE216074.1|BE216074 HV_CEb0009F07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009F07f, mRNA sequence
Length = 570
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 47 aggaggaggagaaggaggagc 27
>gb|BF267345.2|BF267345 HV_CEa0017K09f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0017K09f, mRNA sequence
Length = 895
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 74 aggaggaggagaaggaggagc 54
>gb|BE559108.2|BE559108 HV_CEb0022O04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022O04f, mRNA sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 74 aggaggaggagaaggaggagc 54
>gb|BG417705.1|BG417705 HVSMEk0019D04f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019D04f, mRNA sequence
Length = 439
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 68 aggaggaggagaaggaggagc 48
>gb|BE231123.2|BE231123 HVSMEg0016N19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016N19f, mRNA sequence
Length = 870
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagc 329
|||||||||||||||||||||
Sbjct: 55 aggaggagcagcagcagcagc 75
>gb|BG417241.2|BG417241 HVSMEk0016P06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016P06f, mRNA sequence
Length = 474
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 56 aggaggaggagaaggaggagc 36
>gb|AV913472.1|AV913472 AV913472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22d07 5', mRNA sequence
Length = 627
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 67 aggaggaggagaaggaggagc 47
>gb|AV915026.1|AV915026 AV915026 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9h24 5', mRNA sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 59 aggaggaggagaaggaggagc 39
>gb|AV915539.1|AV915539 AV915539 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14p21 5', mRNA sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 22 aggaggaggagaaggaggagc 2
>gb|AV922952.1|AV922952 AV922952 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3b18 5', mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 78 aggaggaggagaaggaggagc 58
>gb|AV925890.1|AV925890 AV925890 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdd16 5', mRNA sequence
Length = 563
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 87 aggaggaggagaaggaggagc 67
>gb|AV926511.1|AV926511 AV926511 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19k09 5', mRNA sequence
Length = 624
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 65 aggaggaggagaaggaggagc 45
>gb|AV933481.1|AV933481 AV933481 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal7b18 5', mRNA sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 75 aggaggaggagaaggaggagc 55
>gb|AV933482.1|AV933482 AV933482 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal7b20 5', mRNA sequence
Length = 630
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 75 aggaggaggagaaggaggagc 55
>gb|BM816633.1|BM816633 HC111F10_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111F10_T3.ab1 similar to Arginine
decarboxylase,Arginine 2-monooxygenase,Glycine
dehydrogenase (decarboxylating),, mRNA sequence
Length = 870
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 95 aggaggaggagaaggaggagc 75
>gb|AJ460714.1|AJ460714 AJ460714 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200072G08F1, mRNA sequence
Length = 420
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 22 aggaggaggagaaggaggagc 2
>gb|BQ458408.1|BQ458408 HA05F02r HA Hordeum vulgare subsp. vulgare cDNA clone HA05F02
5-PRIME, mRNA sequence
Length = 513
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 67 aggaggaggagaaggaggagc 47
>gb|BQ462545.1|BQ462545 HI01D19T HI Hordeum vulgare subsp. vulgare cDNA clone HI01D19
5-PRIME, mRNA sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 59 aggaggaggagaaggaggagc 39
>gb|BQ462791.1|BQ462791 HI02A08r HI Hordeum vulgare subsp. vulgare cDNA clone HI02A08
5-PRIME, mRNA sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagc 317
|||||||||||||||||||||
Sbjct: 68 aggaggaggagaaggaggagc 48
>gb|BQ463250.1|BQ463250 HI04I09r HI Hordeum vulgare subsp. vulgare cDNA clone HI04I09
5-PRIME, mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 315 agcagcagcagcagccaggcg 335
|||||||||||||||||||||
Sbjct: 211 agcagcagcagcagccaggcg 231
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 448,439
Number of Sequences: 312970
Number of extensions: 448439
Number of successful extensions: 159640
Number of sequences better than 0.5: 126
Number of HSP's better than 0.5 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159327
Number of HSP's gapped (non-prelim): 293
length of query: 3330
length of database: 175,134,539
effective HSP length: 20
effective length of query: 3310
effective length of database: 168,875,139
effective search space: 558976710090
effective search space used: 558976710090
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)