BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3562100.2.1
(759 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI948762.1|BI948762 HVSMEl0010L20f Hordeum vulgare spike... 270 6e-071
gb|CB858531.1|CB858531 HI07G08w HI Hordeum vulgare subsp. v... 252 1e-065
gb|BJ460841.1|BJ460841 BJ460841 K. Sato unpublished cDNA li... 153 1e-035
gb|CV064134.1|CV064134 BNEL98d5 Barley EST endosperm librar... 149 2e-034
gb|BJ453298.1|BJ453298 BJ453298 K. Sato unpublished cDNA li... 147 6e-034
gb|BI957363.1|BI957363 HVSMEn0009C19f Hordeum vulgare rachi... 109 1e-022
gb|CV064122.1|CV064122 BNEL98c5 Barley EST endosperm librar... 80 1e-013
gb|BJ455168.1|BJ455168 BJ455168 K. Sato unpublished cDNA li... 46 0.002
gb|BJ473611.1|BJ473611 BJ473611 K. Sato unpublished cDNA li... 46 0.002
gb|BI780615.2|BI780615 EBes01_SQ001_H19_R embryo sac, 4-6 D... 46 0.002
gb|AJ460855.1|AJ460855 AJ460855 S00002 Hordeum vulgare subs... 42 0.026
gb|CA010088.1|CA010088 HT12A16u HT Hordeum vulgare subsp. v... 38 0.41
>gb|BI948762.1|BI948762 HVSMEl0010L20f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010L20f, mRNA sequence
Length = 834
Score = 270 bits (136), Expect = 6e-071
Identities = 223/252 (88%)
Strand = Plus / Plus
Query: 47 agcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggatt 106
|||||| |||||||| ||||| ||||| |||||||||| ||||||||| |||||||||||
Sbjct: 247 agcatttaaagaagtggcaataattagccatccccgtgctggtgaatacgcatttggatt 306
Query: 107 cataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgttta 166
|||||||| | |||| |||||||||| |||||||||||||||||| |||||||||| ||
Sbjct: 307 tataacatcgagcatgattcttcagactgacaaaggtgatgaagaactgtgtagtgtcta 366
Query: 167 tgtgccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaattat 226
|||||||||||||||| ||| ||||||||| ||||||||||| ||||| || || |||||
Sbjct: 367 tgtgccaaccaatcatctatgtattggtgatatctttttggtgaactctgcagagattat 426
Query: 227 aaggcccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactat 286
||||||||| |||| ||||| ||||| ||||| ||||||||||| ||||||||||| ||
Sbjct: 427 aaggcccaacctgtccattcgagaagggatagagataattgtttctggaggaatgaccat 486
Query: 287 gccgcaggtgat 298
|||| |||||||
Sbjct: 487 gccggaggtgat 498
>gb|CB858531.1|CB858531 HI07G08w HI Hordeum vulgare subsp. vulgare cDNA clone HI07G08
3-PRIME, mRNA sequence
Length = 580
Score = 252 bits (127), Expect = 1e-065
Identities = 184/203 (90%)
Strand = Plus / Minus
Query: 96 gcatttggattcataacatcaaccatggttcttcagacagacaaaggtgatgaagaattg 155
||||||||||| |||||||| | |||| |||||||||| |||||||||||||||||| ||
Sbjct: 578 gcatttggatttataacatcgagcatgattcttcagactgacaaaggtgatgaagaactg 519
Query: 156 tgtagtgtttatgtgccaaccaatcatttatatattggtgacatctttttggtaaactcc 215
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct: 518 tgtagtgtctatgtgccaaccaatcatctatatattggtgatatctttttggtgaactct 459
Query: 216 gccgaaattataaggcccaatttgtctattcgtgaaggcatagaaataattgtttcagga 275
|| ||||||||||||||||| |||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 458 gcagaaattataaggcccaacctgtccattcgagaagggatagaaataattgtttctgga 399
Query: 276 ggaatgactatgccgcaggtgat 298
|||||||| ||||||||||||||
Sbjct: 398 ggaatgaccatgccgcaggtgat 376
>gb|BJ460841.1|BJ460841 BJ460841 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42g23 3', mRNA sequence
Length = 644
Score = 153 bits (77), Expect = 1e-035
Identities = 185/221 (83%)
Strand = Plus / Minus
Query: 75 catccccgtgttggtgaatatgcatttggattcataacatcaaccatggttcttcagaca 134
||||| |||||||||||||| ||||| ||||| ||||||||||| | ||||| ||||||
Sbjct: 518 catccacgtgttggtgaatacgcattcggatttataacatcaactgttgttctccagaca 459
Query: 135 gacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatatattggt 194
|||||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||
Sbjct: 458 gacaaaggtgatgaggaattgtgtagtgtttatgtgccgacaaatcatctatatattggt 399
Query: 195 gacatctttttggtaaactccgccgaaattataaggcccaatttgtctattcgtgaaggc 254
|| || ||| || | ||||| | || || || || || || || || ||||| |||||
Sbjct: 398 gatatatttctgctgaactctgaagagatcatcagaccaaacttatccattcgagaagga 339
Query: 255 atagaaataattgtttcaggaggaatgactatgccgcaggt 295
|| ||||| || ||||| ||||||||||| ||||| |||||
Sbjct: 338 attgaaattatcgtttctggaggaatgaccatgccacaggt 298
>gb|CV064134.1|CV064134 BNEL98d5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL98d5 5' similar to unknown
protein, mRNA sequence
Length = 649
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 47 agcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggatt 106
|||||| |||||||| ||||| ||||| |||||||||| ||||||||| |||||||||||
Sbjct: 523 agcatttaaagaagtggcaataattagccatccccgtgctggtgaatacgcatttggatt 582
Query: 107 cataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgttta 166
|||||||| | |||| |||||||||| |||||||||||||||||| |||||||||| ||
Sbjct: 583 tataacatcgagcatgattcttcagactgacaaaggtgatgaagaactgtgtagtgtcta 642
Query: 167 tgtgcca 173
|||||||
Sbjct: 643 tgtgcca 649
>gb|BJ453298.1|BJ453298 BJ453298 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42g23 5', mRNA sequence
Length = 633
Score = 147 bits (74), Expect = 6e-034
Identities = 110/122 (90%)
Strand = Plus / Plus
Query: 75 catccccgtgttggtgaatatgcatttggattcataacatcaaccatggttcttcagaca 134
||||| |||||||||||||| ||||| ||||| ||||||||||| | ||||| ||||||
Sbjct: 476 catccacgtgttggtgaatacgcattcggatttataacatcaactgttgttctccagaca 535
Query: 135 gacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatatattggt 194
|||||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||
Sbjct: 536 gacaaaggtgatgaggaattgtgtagtgtttatgtgccgacaaatcatctatatattggt 595
Query: 195 ga 196
||
Sbjct: 596 ga 597
>gb|BI957363.1|BI957363 HVSMEn0009C19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009C19f, mRNA sequence
Length = 656
Score = 109 bits (55), Expect = 1e-022
Identities = 101/115 (87%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 47 agcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggatt 106
|||||| |||||||| ||||| ||||| |||||||||| ||||||||| |||||||||||
Sbjct: 542 agcatttaaagaagtggcaataattagccatccccgtgctggtgaatacgcatttggatt 601
Query: 107 cataacatc-aaccatggttcttcagacagacaaaggtgatgaagaattgtgtag 160
|||||||| | |||| |||||||||| |||||| ||||||||||| |||||||
Sbjct: 602 tataacatcggagcatgattcttcagactgacaaaagtgatgaagaactgtgtag 656
>gb|CV064122.1|CV064122 BNEL98c5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL98c5 5' similar to Oryza sativa,
mRNA sequence
Length = 648
Score = 79.8 bits (40), Expect = 1e-013
Identities = 101/120 (84%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||||| ||| |||||| ||||||||| ||||||||||| || |||
Sbjct: 530 aaagaagtggccataattaggcatacccgtgctggtgaatacgcatttggatt-atgaca 588
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
|| | |||| ||||||| || ||||||||||||||| || ||||||| || |||| ||||
Sbjct: 589 tcgagcatgattcttcacactgacaaaggtgatgaacaactgtgtagcgtctatgagcca 648
>gb|BJ455168.1|BJ455168 BJ455168 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35h23 3', mRNA sequence
Length = 697
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 75 catccccgtgttggtgaatatgcatttggattcat 109
||||| ||| |||| ||||||||||||||||||||
Sbjct: 459 catcctcgtattggggaatatgcatttggattcat 425
Score = 38.2 bits (19), Expect = 0.41
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 160 gtgtttatgtgccaaccaatcatttatatattggtgacatctt 202
|||| ||||| |||||||| ||| | ||||||||||| |||||
Sbjct: 374 gtgtgtatgtcccaaccaaccatctttatattggtgatatctt 332
>gb|BJ473611.1|BJ473611 BJ473611 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15k07 3', mRNA sequence
Length = 699
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 75 catccccgtgttggtgaatatgcatttggattcat 109
||||| ||| |||| ||||||||||||||||||||
Sbjct: 459 catcctcgtattggggaatatgcatttggattcat 425
Score = 38.2 bits (19), Expect = 0.41
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 160 gtgtttatgtgccaaccaatcatttatatattggtgacatctt 202
|||| ||||| |||||||| ||| | ||||||||||| |||||
Sbjct: 374 gtgtgtatgtcccaaccaaccatctttatattggtgatatctt 332
>gb|BI780615.2|BI780615 EBes01_SQ001_H19_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ001_H19 5', mRNA sequence
Length = 527
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 75 catccccgtgttggtgaatatgcatttggattcat 109
||||| ||| |||| ||||||||||||||||||||
Sbjct: 311 catcctcgtattggggaatatgcatttggattcat 345
Score = 38.2 bits (19), Expect = 0.41
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 160 gtgtttatgtgccaaccaatcatttatatattggtgacatctt 202
|||| ||||| |||||||| ||| | ||||||||||| |||||
Sbjct: 396 gtgtgtatgtcccaaccaaccatctttatattggtgatatctt 438
>gb|AJ460855.1|AJ460855 AJ460855 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200071B10F1, mRNA sequence
Length = 240
Score = 42.1 bits (21), Expect = 0.026
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 243 attcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcaggt 295
||||| ||||| || ||||| || ||||| ||||||||||| ||||| |||||
Sbjct: 26 attcgagaaggaattgaaattatcgtttctggaggaatgaccatgccacaggt 78
>gb|CA010088.1|CA010088 HT12A16u HT Hordeum vulgare subsp. vulgare cDNA clone HT12A16
3-PRIME, mRNA sequence
Length = 536
Score = 38.2 bits (19), Expect = 0.41
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggt 295
|||||| || ||||| ||||||||||| ||||| |||||
Sbjct: 511 agaaattatcgtttctggaggaatgaccatgccacaggt 473
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,807
Number of Sequences: 312970
Number of extensions: 48807
Number of successful extensions: 13313
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13281
Number of HSP's gapped (non-prelim): 30
length of query: 759
length of database: 175,134,539
effective HSP length: 19
effective length of query: 740
effective length of database: 169,188,109
effective search space: 125199200660
effective search space used: 125199200660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)