BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3562100.2.1
         (759 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI948762.1|BI948762  HVSMEl0010L20f Hordeum vulgare spike...   270   6e-071
gb|CB858531.1|CB858531  HI07G08w HI Hordeum vulgare subsp. v...   252   1e-065
gb|BJ460841.1|BJ460841  BJ460841 K. Sato unpublished cDNA li...   153   1e-035
gb|CV064134.1|CV064134  BNEL98d5 Barley EST endosperm librar...   149   2e-034
gb|BJ453298.1|BJ453298  BJ453298 K. Sato unpublished cDNA li...   147   6e-034
gb|BI957363.1|BI957363  HVSMEn0009C19f Hordeum vulgare rachi...   109   1e-022
gb|CV064122.1|CV064122  BNEL98c5 Barley EST endosperm librar...    80   1e-013
gb|BJ455168.1|BJ455168  BJ455168 K. Sato unpublished cDNA li...    46   0.002
gb|BJ473611.1|BJ473611  BJ473611 K. Sato unpublished cDNA li...    46   0.002
gb|BI780615.2|BI780615  EBes01_SQ001_H19_R embryo sac, 4-6 D...    46   0.002
gb|AJ460855.1|AJ460855  AJ460855 S00002 Hordeum vulgare subs...    42   0.026
gb|CA010088.1|CA010088  HT12A16u HT Hordeum vulgare subsp. v...    38   0.41 
>gb|BI948762.1|BI948762 HVSMEl0010L20f Hordeum vulgare spike EST library HVcDNA0012
           (Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
           clone HVSMEl0010L20f, mRNA sequence
          Length = 834

 Score =  270 bits (136), Expect = 6e-071
 Identities = 223/252 (88%)
 Strand = Plus / Plus

                                                                       
Query: 47  agcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggatt 106
           |||||| |||||||| ||||| ||||| |||||||||| ||||||||| |||||||||||
Sbjct: 247 agcatttaaagaagtggcaataattagccatccccgtgctggtgaatacgcatttggatt 306

                                                                       
Query: 107 cataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgttta 166
            |||||||| | |||| |||||||||| |||||||||||||||||| |||||||||| ||
Sbjct: 307 tataacatcgagcatgattcttcagactgacaaaggtgatgaagaactgtgtagtgtcta 366

                                                                       
Query: 167 tgtgccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaattat 226
           |||||||||||||||| ||| ||||||||| ||||||||||| ||||| || || |||||
Sbjct: 367 tgtgccaaccaatcatctatgtattggtgatatctttttggtgaactctgcagagattat 426

                                                                       
Query: 227 aaggcccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactat 286
           |||||||||  |||| ||||| ||||| ||||| ||||||||||| ||||||||||| ||
Sbjct: 427 aaggcccaacctgtccattcgagaagggatagagataattgtttctggaggaatgaccat 486

                       
Query: 287 gccgcaggtgat 298
           |||| |||||||
Sbjct: 487 gccggaggtgat 498
>gb|CB858531.1|CB858531 HI07G08w HI Hordeum vulgare subsp. vulgare cDNA clone HI07G08
           3-PRIME, mRNA sequence
          Length = 580

 Score =  252 bits (127), Expect = 1e-065
 Identities = 184/203 (90%)
 Strand = Plus / Minus

                                                                       
Query: 96  gcatttggattcataacatcaaccatggttcttcagacagacaaaggtgatgaagaattg 155
           ||||||||||| |||||||| | |||| |||||||||| |||||||||||||||||| ||
Sbjct: 578 gcatttggatttataacatcgagcatgattcttcagactgacaaaggtgatgaagaactg 519

                                                                       
Query: 156 tgtagtgtttatgtgccaaccaatcatttatatattggtgacatctttttggtaaactcc 215
           |||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||| 
Sbjct: 518 tgtagtgtctatgtgccaaccaatcatctatatattggtgatatctttttggtgaactct 459

                                                                       
Query: 216 gccgaaattataaggcccaatttgtctattcgtgaaggcatagaaataattgtttcagga 275
           || |||||||||||||||||  |||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 458 gcagaaattataaggcccaacctgtccattcgagaagggatagaaataattgtttctgga 399

                                  
Query: 276 ggaatgactatgccgcaggtgat 298
           |||||||| ||||||||||||||
Sbjct: 398 ggaatgaccatgccgcaggtgat 376
>gb|BJ460841.1|BJ460841 BJ460841 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak42g23 3', mRNA sequence
          Length = 644

 Score =  153 bits (77), Expect = 1e-035
 Identities = 185/221 (83%)
 Strand = Plus / Minus

                                                                       
Query: 75  catccccgtgttggtgaatatgcatttggattcataacatcaaccatggttcttcagaca 134
           ||||| |||||||||||||| ||||| ||||| |||||||||||  | ||||| ||||||
Sbjct: 518 catccacgtgttggtgaatacgcattcggatttataacatcaactgttgttctccagaca 459

                                                                       
Query: 135 gacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatatattggt 194
           |||||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||
Sbjct: 458 gacaaaggtgatgaggaattgtgtagtgtttatgtgccgacaaatcatctatatattggt 399

                                                                       
Query: 195 gacatctttttggtaaactccgccgaaattataaggcccaatttgtctattcgtgaaggc 254
           || || ||| || | ||||| |  || || || || || || || || ||||| ||||| 
Sbjct: 398 gatatatttctgctgaactctgaagagatcatcagaccaaacttatccattcgagaagga 339

                                                    
Query: 255 atagaaataattgtttcaggaggaatgactatgccgcaggt 295
           || ||||| || ||||| ||||||||||| ||||| |||||
Sbjct: 338 attgaaattatcgtttctggaggaatgaccatgccacaggt 298
>gb|CV064134.1|CV064134 BNEL98d5 Barley EST endosperm library Hordeum vulgare subsp.
           vulgare cDNA clone BNEL98d5 5' similar to unknown
           protein, mRNA sequence
          Length = 649

 Score =  149 bits (75), Expect = 2e-034
 Identities = 114/127 (89%)
 Strand = Plus / Plus

                                                                       
Query: 47  agcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggatt 106
           |||||| |||||||| ||||| ||||| |||||||||| ||||||||| |||||||||||
Sbjct: 523 agcatttaaagaagtggcaataattagccatccccgtgctggtgaatacgcatttggatt 582

                                                                       
Query: 107 cataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgttta 166
            |||||||| | |||| |||||||||| |||||||||||||||||| |||||||||| ||
Sbjct: 583 tataacatcgagcatgattcttcagactgacaaaggtgatgaagaactgtgtagtgtcta 642

                  
Query: 167 tgtgcca 173
           |||||||
Sbjct: 643 tgtgcca 649
>gb|BJ453298.1|BJ453298 BJ453298 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak42g23 5', mRNA sequence
          Length = 633

 Score =  147 bits (74), Expect = 6e-034
 Identities = 110/122 (90%)
 Strand = Plus / Plus

                                                                       
Query: 75  catccccgtgttggtgaatatgcatttggattcataacatcaaccatggttcttcagaca 134
           ||||| |||||||||||||| ||||| ||||| |||||||||||  | ||||| ||||||
Sbjct: 476 catccacgtgttggtgaatacgcattcggatttataacatcaactgttgttctccagaca 535

                                                                       
Query: 135 gacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatatattggt 194
           |||||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||
Sbjct: 536 gacaaaggtgatgaggaattgtgtagtgtttatgtgccgacaaatcatctatatattggt 595

             
Query: 195 ga 196
           ||
Sbjct: 596 ga 597
>gb|BI957363.1|BI957363 HVSMEn0009C19f Hordeum vulgare rachis EST library HVcDNA0015
           (normal) Hordeum vulgare subsp. vulgare cDNA clone
           HVSMEn0009C19f, mRNA sequence
          Length = 656

 Score =  109 bits (55), Expect = 1e-022
 Identities = 101/115 (87%), Gaps = 1/115 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  agcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggatt 106
           |||||| |||||||| ||||| ||||| |||||||||| ||||||||| |||||||||||
Sbjct: 542 agcatttaaagaagtggcaataattagccatccccgtgctggtgaatacgcatttggatt 601

                                                                  
Query: 107 cataacatc-aaccatggttcttcagacagacaaaggtgatgaagaattgtgtag 160
            ||||||||  | |||| |||||||||| |||||| ||||||||||| |||||||
Sbjct: 602 tataacatcggagcatgattcttcagactgacaaaagtgatgaagaactgtgtag 656
>gb|CV064122.1|CV064122 BNEL98c5 Barley EST endosperm library Hordeum vulgare subsp.
           vulgare cDNA clone BNEL98c5 5' similar to Oryza sativa,
           mRNA sequence
          Length = 648

 Score = 79.8 bits (40), Expect = 1e-013
 Identities = 101/120 (84%), Gaps = 1/120 (0%)
 Strand = Plus / Plus

                                                                       
Query: 54  aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
           |||||||| || || ||||| ||| |||||| ||||||||| ||||||||||| || |||
Sbjct: 530 aaagaagtggccataattaggcatacccgtgctggtgaatacgcatttggatt-atgaca 588

                                                                       
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
           || | |||| ||||||| || ||||||||||||||| || ||||||| || |||| ||||
Sbjct: 589 tcgagcatgattcttcacactgacaaaggtgatgaacaactgtgtagcgtctatgagcca 648
>gb|BJ455168.1|BJ455168 BJ455168 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak35h23 3', mRNA sequence
          Length = 697

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 75  catccccgtgttggtgaatatgcatttggattcat 109
           ||||| ||| |||| ||||||||||||||||||||
Sbjct: 459 catcctcgtattggggaatatgcatttggattcat 425

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                      
Query: 160 gtgtttatgtgccaaccaatcatttatatattggtgacatctt 202
           |||| ||||| |||||||| ||| | ||||||||||| |||||
Sbjct: 374 gtgtgtatgtcccaaccaaccatctttatattggtgatatctt 332
>gb|BJ473611.1|BJ473611 BJ473611 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
           heading stage top three leaves Hordeum vulgare subsp.
           vulgare cDNA clone baal15k07 3', mRNA sequence
          Length = 699

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 75  catccccgtgttggtgaatatgcatttggattcat 109
           ||||| ||| |||| ||||||||||||||||||||
Sbjct: 459 catcctcgtattggggaatatgcatttggattcat 425

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                      
Query: 160 gtgtttatgtgccaaccaatcatttatatattggtgacatctt 202
           |||| ||||| |||||||| ||| | ||||||||||| |||||
Sbjct: 374 gtgtgtatgtcccaaccaaccatctttatattggtgatatctt 332
>gb|BI780615.2|BI780615 EBes01_SQ001_H19_R embryo sac, 4-6 DPA, no treatment, cv Optic,
           EBes01 Hordeum vulgare subsp. vulgare cDNA clone
           EBes01_SQ001_H19 5', mRNA sequence
          Length = 527

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 75  catccccgtgttggtgaatatgcatttggattcat 109
           ||||| ||| |||| ||||||||||||||||||||
Sbjct: 311 catcctcgtattggggaatatgcatttggattcat 345

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 160 gtgtttatgtgccaaccaatcatttatatattggtgacatctt 202
           |||| ||||| |||||||| ||| | ||||||||||| |||||
Sbjct: 396 gtgtgtatgtcccaaccaaccatctttatattggtgatatctt 438
>gb|AJ460855.1|AJ460855 AJ460855 S00002 Hordeum vulgare subsp. vulgare cDNA clone
           S0000200071B10F1, mRNA sequence
          Length = 240

 Score = 42.1 bits (21), Expect = 0.026
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 243 attcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcaggt 295
           ||||| ||||| || ||||| || ||||| ||||||||||| ||||| |||||
Sbjct: 26  attcgagaaggaattgaaattatcgtttctggaggaatgaccatgccacaggt 78
>gb|CA010088.1|CA010088 HT12A16u HT Hordeum vulgare subsp. vulgare cDNA clone HT12A16
           3-PRIME, mRNA sequence
          Length = 536

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 34/39 (87%)
 Strand = Plus / Minus

                                                  
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggt 295
           |||||| || ||||| ||||||||||| ||||| |||||
Sbjct: 511 agaaattatcgtttctggaggaatgaccatgccacaggt 473
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,807
Number of Sequences: 312970
Number of extensions: 48807
Number of successful extensions: 13313
Number of sequences better than  0.5: 12
Number of HSP's better than  0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13281
Number of HSP's gapped (non-prelim): 30
length of query: 759
length of database: 175,134,539
effective HSP length: 19
effective length of query: 740
effective length of database: 169,188,109
effective search space: 125199200660
effective search space used: 125199200660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)